Wall clock time and date at job start Tue Mar 31 2020 10:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38285 * 119.93275 * 2 1 4 4 C 1.38108 * 120.06916 * 180.28024 * 3 2 1 5 5 C 1.38869 * 119.92932 * 359.47055 * 4 3 2 6 6 N 1.39924 * 120.06692 * 180.30133 * 5 4 3 7 7 C 1.46501 * 119.99684 * 247.67276 * 6 5 4 8 8 C 1.53000 * 109.47203 * 90.00237 * 7 6 5 9 9 C 1.47202 * 109.47399 * 180.02562 * 8 7 6 10 10 N 7.71666 * 146.82540 * 267.40610 * 2 1 3 11 11 C 1.34777 * 120.00267 * 67.68046 * 6 5 4 12 12 O 1.21286 * 120.00048 * 4.81901 * 11 6 5 13 13 C 1.50700 * 119.99602 * 184.83146 * 11 6 5 14 14 C 1.53002 * 109.46688 * 179.97438 * 13 11 6 15 15 C 1.53005 * 109.47122 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47122 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46688 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99854 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46923 * 89.99765 * 21 19 17 23 23 H 1.48495 * 109.47357 * 209.99726 * 21 19 17 24 24 H 1.48504 * 109.47188 * 330.00063 * 21 19 17 25 25 C 1.38871 * 119.86169 * 0.27417 * 5 4 3 26 26 C 1.38112 * 119.92691 * 0.02562 * 25 5 4 27 27 H 1.09009 * 109.46827 * 270.23476 * 1 2 3 28 28 H 1.08997 * 109.47445 * 30.22893 * 1 2 3 29 29 H 1.08996 * 109.47590 * 150.23434 * 1 2 3 30 30 H 1.08005 * 119.95857 * 0.04401 * 3 2 1 31 31 H 1.08007 * 120.03350 * 179.73996 * 4 3 2 32 32 H 1.08998 * 109.47171 * 210.00024 * 7 6 5 33 33 H 1.09000 * 109.47209 * 329.99991 * 7 6 5 34 34 H 1.08998 * 109.46883 * 299.99963 * 8 7 6 35 35 H 1.09000 * 109.47239 * 59.99773 * 8 7 6 36 36 H 1.09006 * 109.46923 * 299.99072 * 13 11 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 13 11 6 38 38 H 1.08993 * 109.47113 * 299.99242 * 14 13 11 39 39 H 1.08999 * 109.47271 * 59.99754 * 14 13 11 40 40 H 1.08998 * 109.47162 * 300.00001 * 15 14 13 41 41 H 1.08999 * 109.46980 * 59.99905 * 15 14 13 42 42 H 1.09001 * 109.46996 * 299.99271 * 16 15 14 43 43 H 1.08999 * 109.47271 * 60.00083 * 16 15 14 44 44 H 0.97000 * 120.00056 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.03892 * 180.02562 * 25 5 4 46 46 H 1.08004 * 119.96632 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0058 5 6 4.2739 -0.0001 -0.0006 6 7 5.6731 -0.0001 -0.0001 7 6 6.4059 -0.4870 -1.1715 8 6 6.6613 0.6756 -2.1329 9 6 7.3971 0.1863 -3.3102 10 7 7.9659 -0.1911 -4.2182 11 6 6.3467 0.4477 1.0780 12 8 5.7432 0.7684 2.0799 13 6 7.8497 0.5500 1.0383 14 6 8.3601 1.0820 2.3789 15 6 9.8861 1.1854 2.3390 16 6 10.3965 1.7180 3.6794 17 6 11.8995 1.8204 3.6397 18 1 12.4370 1.5338 2.7479 19 6 12.5886 2.2790 4.7425 20 7 11.9342 2.6275 5.8287 21 14 14.4517 2.4052 4.6936 22 1 14.8439 3.7494 4.1990 23 1 14.9976 2.2017 6.0595 24 1 14.9946 1.3650 3.7834 25 6 3.5780 -1.2019 0.0047 26 6 2.1969 -1.1984 0.0043 27 1 -0.3633 0.0042 1.0278 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6552 2.1327 0.0007 31 1 4.1164 2.1380 -0.0101 32 1 7.3582 -0.9115 -0.8537 33 1 5.8170 -1.2530 -1.6760 34 1 5.7090 1.1001 -2.4506 35 1 7.2502 1.4416 -1.6284 36 1 8.2762 -0.4357 0.8521 37 1 8.1466 1.2310 0.2407 38 1 7.9337 2.0677 2.5647 39 1 8.0632 0.4014 3.1768 40 1 10.3123 0.1995 2.1533 41 1 10.1834 1.8659 1.5411 42 1 9.9704 2.7041 3.8645 43 1 10.0992 1.0379 4.4776 44 1 12.4189 2.9505 6.6043 45 1 4.1162 -2.1383 0.0092 46 1 1.6551 -2.1327 0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813427596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:59 Heat of formation + Delta-G solvation = -25.903733 kcal Electronic energy + Delta-G solvation = -24767.957903 eV Core-core repulsion = 21234.945053 eV Total energy + Delta-G solvation = -3533.012850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68572 -39.70180 -38.08064 -36.89828 -36.56023 -34.64445 -33.49730 -31.86934 -31.77337 -31.27632 -28.07757 -26.83870 -25.46040 -24.21157 -23.53056 -22.39721 -21.62164 -20.25131 -18.76198 -18.48535 -18.26245 -17.59398 -16.93194 -16.51278 -16.31828 -16.25138 -15.93535 -15.33878 -15.30694 -14.80854 -14.58454 -14.50800 -14.40600 -14.32045 -13.79495 -13.67819 -13.64570 -13.48979 -13.23489 -13.10940 -12.86336 -12.81234 -12.75443 -12.39253 -12.32787 -12.23210 -12.09734 -11.96920 -11.85236 -11.32429 -11.30607 -11.13054 -10.80267 -10.53139 -10.25648 -9.84185 -9.22091 -8.17289 -6.28796 0.30918 0.50130 1.41106 1.42840 1.52045 1.53832 1.68080 1.85221 1.96612 2.42717 2.76644 3.11727 3.15587 3.67669 3.93372 3.94536 4.03627 4.05688 4.06902 4.12801 4.16598 4.47782 4.51297 4.53012 4.57458 4.64276 4.72055 4.82045 4.83609 4.87249 4.89324 4.90701 5.04022 5.16878 5.17665 5.23435 5.36461 5.41485 5.42569 5.53769 5.60242 5.68938 5.72205 5.82304 5.91463 6.13801 6.23333 6.27849 6.62281 6.90251 7.16491 7.40658 8.94809 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002486 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.764669 B =11261.289256 C =12763.257024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.118 4.118 5 C 0.119 3.881 6 N -0.565 5.565 7 C 0.110 3.890 8 C -0.042 4.042 9 C 0.242 3.758 10 N -0.491 5.491 11 C 0.519 3.481 12 O -0.567 6.567 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.539 4.539 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.260 1.260 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.063 0.937 42 H -0.015 1.015 43 H -0.016 1.016 44 H 0.262 0.738 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.846 -7.399 -18.865 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.138 4.138 5 C 0.029 3.971 6 N -0.294 5.294 7 C -0.013 4.013 8 C -0.083 4.083 9 C -0.075 4.075 10 N -0.169 5.169 11 C 0.310 3.690 12 O -0.444 6.444 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.259 -7.739 -19.520 30.601 hybrid contribution 0.766 0.548 1.049 1.410 sum -21.493 -7.191 -18.472 29.238 Atomic orbital electron populations 1.20841 0.89429 1.03861 1.02884 1.20308 0.97569 0.92943 0.98630 1.21170 0.93380 0.98783 1.00491 1.21354 0.94980 0.97426 1.00024 1.17712 0.82680 0.93727 1.03025 1.45469 1.03626 1.64258 1.16009 1.21806 0.99346 0.95594 0.84511 1.19875 1.01245 0.99773 0.87412 1.29186 0.92291 0.92207 0.93853 1.81325 1.11759 1.10390 1.13452 1.21368 0.91074 0.74975 0.81591 1.90741 1.71360 1.49318 1.33007 1.21828 0.89120 1.05835 1.00138 1.21254 0.95341 1.00434 0.96418 1.21446 0.93585 1.00705 0.97593 1.19062 0.94878 0.94216 0.93756 1.21765 0.93554 1.42844 0.99564 0.91615 1.26068 1.04034 0.95142 0.95170 1.70127 1.37724 1.45492 1.04454 0.85425 0.79086 0.78941 0.77456 1.19752 1.21048 1.18412 1.21404 0.94937 0.97400 1.00574 1.21200 0.93436 0.98664 1.00260 0.90891 0.90607 0.90294 0.84407 0.86110 0.87035 0.87387 0.85146 0.85167 0.86010 0.85481 0.93572 0.93997 0.92139 0.91839 0.99629 0.99795 0.92910 0.84605 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.09 -1.33 5.88 -19.84 -0.12 -1.44 16 3 C -0.12 -1.89 9.69 22.25 0.22 -1.67 16 4 C -0.12 -2.16 9.54 22.39 0.21 -1.95 16 5 C 0.12 2.12 4.76 38.15 0.18 2.30 16 6 N -0.56 -8.95 2.52 -631.25 -1.59 -10.54 16 7 C 0.11 0.87 5.08 86.38 0.44 1.31 16 8 C -0.04 -0.26 6.02 28.79 0.17 -0.09 16 9 C 0.24 3.17 15.43 89.44 1.38 4.55 16 10 N -0.49 -10.39 18.54 20.01 0.37 -10.02 16 11 C 0.52 12.21 7.52 87.66 0.66 12.87 16 12 O -0.57 -19.59 15.73 -3.05 -0.05 -19.63 16 13 C -0.13 -2.69 4.37 29.85 0.13 -2.56 16 14 C -0.10 -3.20 4.50 30.60 0.14 -3.06 16 15 C -0.10 -3.70 5.15 30.60 0.16 -3.54 16 16 C 0.02 0.97 4.97 29.85 0.15 1.12 16 17 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 20 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 21 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 C -0.12 -1.94 9.68 22.39 0.22 -1.72 16 26 C -0.12 -1.63 9.69 22.25 0.22 -1.41 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 29 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 30 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.11 0.65 6.47 -2.39 -0.02 0.63 16 33 H 0.11 0.58 7.85 -2.39 -0.02 0.56 16 34 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.13 0.56 6.95 -2.39 -0.02 0.54 16 36 H 0.12 1.90 7.26 -2.38 -0.02 1.89 16 37 H 0.13 1.81 6.95 -2.39 -0.02 1.80 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 46 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -81.71 392.80 7.56 -74.15 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.96 Total: 3.93 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 5.56 Total: -26.17 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -0.94 Total: -78.93 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -81.71 7.56 -74.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813427596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds