Wall clock time and date at job start Tue Mar 31 2020 10:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38285 * 119.93275 * 2 1
4 4 C 1.38108 * 120.06916 * 180.28024 * 3 2 1
5 5 C 1.38869 * 119.92932 * 359.47055 * 4 3 2
6 6 N 1.39924 * 120.06692 * 180.30133 * 5 4 3
7 7 C 1.46501 * 119.99684 * 247.67276 * 6 5 4
8 8 C 1.53000 * 109.47203 * 90.00237 * 7 6 5
9 9 C 1.47202 * 109.47399 * 180.02562 * 8 7 6
10 10 N 7.71666 * 146.82540 * 267.40610 * 2 1 3
11 11 C 1.34777 * 120.00267 * 67.68046 * 6 5 4
12 12 O 1.21286 * 120.00048 * 4.81901 * 11 6 5
13 13 C 1.50700 * 119.99602 * 184.83146 * 11 6 5
14 14 C 1.53002 * 109.46688 * 179.97438 * 13 11 6
15 15 C 1.53005 * 109.47122 * 179.97438 * 14 13 11
16 16 C 1.53002 * 109.47122 * 179.97438 * 15 14 13
17 17 C 1.50700 * 109.46688 * 180.02562 * 16 15 14
18 18 H 1.07998 * 120.00472 * 359.97438 * 17 16 15
19 19 C 1.37886 * 119.99810 * 180.02562 * 17 16 15
20 20 N 1.31514 * 119.99854 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 120.00161 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.46923 * 89.99765 * 21 19 17
23 23 H 1.48495 * 109.47357 * 209.99726 * 21 19 17
24 24 H 1.48504 * 109.47188 * 330.00063 * 21 19 17
25 25 C 1.38871 * 119.86169 * 0.27417 * 5 4 3
26 26 C 1.38112 * 119.92691 * 0.02562 * 25 5 4
27 27 H 1.09009 * 109.46827 * 270.23476 * 1 2 3
28 28 H 1.08997 * 109.47445 * 30.22893 * 1 2 3
29 29 H 1.08996 * 109.47590 * 150.23434 * 1 2 3
30 30 H 1.08005 * 119.95857 * 0.04401 * 3 2 1
31 31 H 1.08007 * 120.03350 * 179.73996 * 4 3 2
32 32 H 1.08998 * 109.47171 * 210.00024 * 7 6 5
33 33 H 1.09000 * 109.47209 * 329.99991 * 7 6 5
34 34 H 1.08998 * 109.46883 * 299.99963 * 8 7 6
35 35 H 1.09000 * 109.47239 * 59.99773 * 8 7 6
36 36 H 1.09006 * 109.46923 * 299.99072 * 13 11 6
37 37 H 1.08999 * 109.47466 * 59.99499 * 13 11 6
38 38 H 1.08993 * 109.47113 * 299.99242 * 14 13 11
39 39 H 1.08999 * 109.47271 * 59.99754 * 14 13 11
40 40 H 1.08998 * 109.47162 * 300.00001 * 15 14 13
41 41 H 1.08999 * 109.46980 * 59.99905 * 15 14 13
42 42 H 1.09001 * 109.46996 * 299.99271 * 16 15 14
43 43 H 1.08999 * 109.47271 * 60.00083 * 16 15 14
44 44 H 0.97000 * 120.00056 * 180.02562 * 20 19 17
45 45 H 1.08003 * 120.03892 * 180.02562 * 25 5 4
46 46 H 1.08004 * 119.96632 * 180.02562 * 26 25 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1970 1.1984 0.0000
4 6 3.5781 1.2017 -0.0058
5 6 4.2739 -0.0001 -0.0006
6 7 5.6731 -0.0001 -0.0001
7 6 6.4059 -0.4870 -1.1715
8 6 6.6613 0.6756 -2.1329
9 6 7.3971 0.1863 -3.3102
10 7 7.9659 -0.1911 -4.2182
11 6 6.3467 0.4477 1.0780
12 8 5.7432 0.7684 2.0799
13 6 7.8497 0.5500 1.0383
14 6 8.3601 1.0820 2.3789
15 6 9.8861 1.1854 2.3390
16 6 10.3965 1.7180 3.6794
17 6 11.8995 1.8204 3.6397
18 1 12.4370 1.5338 2.7479
19 6 12.5886 2.2790 4.7425
20 7 11.9342 2.6275 5.8287
21 14 14.4517 2.4052 4.6936
22 1 14.8439 3.7494 4.1990
23 1 14.9976 2.2017 6.0595
24 1 14.9946 1.3650 3.7834
25 6 3.5780 -1.2019 0.0047
26 6 2.1969 -1.1984 0.0043
27 1 -0.3633 0.0042 1.0278
28 1 -0.3634 0.8879 -0.5174
29 1 -0.3634 -0.8920 -0.5102
30 1 1.6552 2.1327 0.0007
31 1 4.1164 2.1380 -0.0101
32 1 7.3582 -0.9115 -0.8537
33 1 5.8170 -1.2530 -1.6760
34 1 5.7090 1.1001 -2.4506
35 1 7.2502 1.4416 -1.6284
36 1 8.2762 -0.4357 0.8521
37 1 8.1466 1.2310 0.2407
38 1 7.9337 2.0677 2.5647
39 1 8.0632 0.4014 3.1768
40 1 10.3123 0.1995 2.1533
41 1 10.1834 1.8659 1.5411
42 1 9.9704 2.7041 3.8645
43 1 10.0992 1.0379 4.4776
44 1 12.4189 2.9505 6.6043
45 1 4.1162 -2.1383 0.0092
46 1 1.6551 -2.1327 0.0089
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000813427596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:51:59
Heat of formation + Delta-G solvation = -25.903733 kcal
Electronic energy + Delta-G solvation = -24767.957903 eV
Core-core repulsion = 21234.945053 eV
Total energy + Delta-G solvation = -3533.012850 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.68572 -39.70180 -38.08064 -36.89828 -36.56023 -34.64445 -33.49730 -31.86934
-31.77337 -31.27632 -28.07757 -26.83870 -25.46040 -24.21157 -23.53056 -22.39721
-21.62164 -20.25131 -18.76198 -18.48535 -18.26245 -17.59398 -16.93194 -16.51278
-16.31828 -16.25138 -15.93535 -15.33878 -15.30694 -14.80854 -14.58454 -14.50800
-14.40600 -14.32045 -13.79495 -13.67819 -13.64570 -13.48979 -13.23489 -13.10940
-12.86336 -12.81234 -12.75443 -12.39253 -12.32787 -12.23210 -12.09734 -11.96920
-11.85236 -11.32429 -11.30607 -11.13054 -10.80267 -10.53139 -10.25648 -9.84185
-9.22091 -8.17289 -6.28796 0.30918 0.50130 1.41106 1.42840 1.52045
1.53832 1.68080 1.85221 1.96612 2.42717 2.76644 3.11727 3.15587
3.67669 3.93372 3.94536 4.03627 4.05688 4.06902 4.12801 4.16598
4.47782 4.51297 4.53012 4.57458 4.64276 4.72055 4.82045 4.83609
4.87249 4.89324 4.90701 5.04022 5.16878 5.17665 5.23435 5.36461
5.41485 5.42569 5.53769 5.60242 5.68938 5.72205 5.82304 5.91463
6.13801 6.23333 6.27849 6.62281 6.90251 7.16491 7.40658 8.94809
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.014758 B = 0.002486 C = 0.002193
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1896.764669 B =11261.289256 C =12763.257024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.094 4.094
3 C -0.120 4.120
4 C -0.118 4.118
5 C 0.119 3.881
6 N -0.565 5.565
7 C 0.110 3.890
8 C -0.042 4.042
9 C 0.242 3.758
10 N -0.491 5.491
11 C 0.519 3.481
12 O -0.567 6.567
13 C -0.130 4.130
14 C -0.096 4.096
15 C -0.096 4.096
16 C 0.018 3.982
17 C -0.539 4.539
18 H 0.066 0.934
19 C -0.007 4.007
20 N -0.937 5.937
21 Si 0.967 3.033
22 H -0.272 1.272
23 H -0.285 1.285
24 H -0.260 1.260
25 C -0.124 4.124
26 C -0.117 4.117
27 H 0.072 0.928
28 H 0.075 0.925
29 H 0.078 0.922
30 H 0.138 0.862
31 H 0.121 0.879
32 H 0.112 0.888
33 H 0.108 0.892
34 H 0.131 0.869
35 H 0.131 0.869
36 H 0.122 0.878
37 H 0.127 0.873
38 H 0.045 0.955
39 H 0.041 0.959
40 H 0.060 0.940
41 H 0.063 0.937
42 H -0.015 1.015
43 H -0.016 1.016
44 H 0.262 0.738
45 H 0.136 0.864
46 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.846 -7.399 -18.865 30.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.095 4.095
3 C -0.138 4.138
4 C -0.138 4.138
5 C 0.029 3.971
6 N -0.294 5.294
7 C -0.013 4.013
8 C -0.083 4.083
9 C -0.075 4.075
10 N -0.169 5.169
11 C 0.310 3.690
12 O -0.444 6.444
13 C -0.169 4.169
14 C -0.134 4.134
15 C -0.133 4.133
16 C -0.019 4.019
17 C -0.577 4.577
18 H 0.084 0.916
19 C -0.204 4.204
20 N -0.578 5.578
21 Si 0.791 3.209
22 H -0.198 1.198
23 H -0.210 1.210
24 H -0.184 1.184
25 C -0.143 4.143
26 C -0.136 4.136
27 H 0.091 0.909
28 H 0.094 0.906
29 H 0.097 0.903
30 H 0.156 0.844
31 H 0.139 0.861
32 H 0.130 0.870
33 H 0.126 0.874
34 H 0.149 0.851
35 H 0.148 0.852
36 H 0.140 0.860
37 H 0.145 0.855
38 H 0.064 0.936
39 H 0.060 0.940
40 H 0.079 0.921
41 H 0.082 0.918
42 H 0.004 0.996
43 H 0.002 0.998
44 H 0.071 0.929
45 H 0.154 0.846
46 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -22.259 -7.739 -19.520 30.601
hybrid contribution 0.766 0.548 1.049 1.410
sum -21.493 -7.191 -18.472 29.238
Atomic orbital electron populations
1.20841 0.89429 1.03861 1.02884 1.20308 0.97569 0.92943 0.98630
1.21170 0.93380 0.98783 1.00491 1.21354 0.94980 0.97426 1.00024
1.17712 0.82680 0.93727 1.03025 1.45469 1.03626 1.64258 1.16009
1.21806 0.99346 0.95594 0.84511 1.19875 1.01245 0.99773 0.87412
1.29186 0.92291 0.92207 0.93853 1.81325 1.11759 1.10390 1.13452
1.21368 0.91074 0.74975 0.81591 1.90741 1.71360 1.49318 1.33007
1.21828 0.89120 1.05835 1.00138 1.21254 0.95341 1.00434 0.96418
1.21446 0.93585 1.00705 0.97593 1.19062 0.94878 0.94216 0.93756
1.21765 0.93554 1.42844 0.99564 0.91615 1.26068 1.04034 0.95142
0.95170 1.70127 1.37724 1.45492 1.04454 0.85425 0.79086 0.78941
0.77456 1.19752 1.21048 1.18412 1.21404 0.94937 0.97400 1.00574
1.21200 0.93436 0.98664 1.00260 0.90891 0.90607 0.90294 0.84407
0.86110 0.87035 0.87387 0.85146 0.85167 0.86010 0.85481 0.93572
0.93997 0.92139 0.91839 0.99629 0.99795 0.92910 0.84605 0.83787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16
2 C -0.09 -1.33 5.88 -19.84 -0.12 -1.44 16
3 C -0.12 -1.89 9.69 22.25 0.22 -1.67 16
4 C -0.12 -2.16 9.54 22.39 0.21 -1.95 16
5 C 0.12 2.12 4.76 38.15 0.18 2.30 16
6 N -0.56 -8.95 2.52 -631.25 -1.59 -10.54 16
7 C 0.11 0.87 5.08 86.38 0.44 1.31 16
8 C -0.04 -0.26 6.02 28.79 0.17 -0.09 16
9 C 0.24 3.17 15.43 89.44 1.38 4.55 16
10 N -0.49 -10.39 18.54 20.01 0.37 -10.02 16
11 C 0.52 12.21 7.52 87.66 0.66 12.87 16
12 O -0.57 -19.59 15.73 -3.05 -0.05 -19.63 16
13 C -0.13 -2.69 4.37 29.85 0.13 -2.56 16
14 C -0.10 -3.20 4.50 30.60 0.14 -3.06 16
15 C -0.10 -3.70 5.15 30.60 0.16 -3.54 16
16 C 0.02 0.97 4.97 29.85 0.15 1.12 16
17 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16
18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16
19 C -0.01 -0.41 5.46 84.66 0.46 0.05 16
20 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16
21 Si 0.97 44.62 29.54 68.60 2.03 46.65 16
22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16
25 C -0.12 -1.94 9.68 22.39 0.22 -1.72 16
26 C -0.12 -1.63 9.69 22.25 0.22 -1.41 16
27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16
28 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16
29 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16
30 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16
31 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16
32 H 0.11 0.65 6.47 -2.39 -0.02 0.63 16
33 H 0.11 0.58 7.85 -2.39 -0.02 0.56 16
34 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16
35 H 0.13 0.56 6.95 -2.39 -0.02 0.54 16
36 H 0.12 1.90 7.26 -2.38 -0.02 1.89 16
37 H 0.13 1.81 6.95 -2.39 -0.02 1.80 16
38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16
39 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16
40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
41 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16
42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16
43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
45 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16
46 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16
Total: -1.00 -81.71 392.80 7.56 -74.15
By element:
Atomic # 1 Polarization: 2.97 SS G_CDS: 0.96 Total: 3.93 kcal
Atomic # 6 Polarization: -31.73 SS G_CDS: 5.56 Total: -26.17 kcal
Atomic # 7 Polarization: -77.99 SS G_CDS: -0.94 Total: -78.93 kcal
Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.63 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -81.71 7.56 -74.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000813427596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal
(2) G-P(sol) polarization free energy of solvation -81.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.462 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.558 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds