Wall clock time and date at job start Tue Mar 31 2020 10:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47195 * 109.46848 * 2 1 4 4 N 2.60800 * 109.47109 * 0.02562 * 2 1 3 5 5 C 1.52997 * 109.46926 * 120.00192 * 2 1 3 6 6 C 1.53008 * 109.46604 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.46777 * 299.99563 * 6 5 2 8 8 N 1.46907 * 109.46794 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99930 * 155.00220 * 8 7 6 10 10 C 1.50695 * 109.46891 * 179.97438 * 9 8 7 11 11 C 1.38299 * 119.93247 * 90.00141 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 C 1.52997 * 109.47197 * 60.00800 * 7 6 5 26 26 C 1.52997 * 109.46915 * 240.00350 * 2 1 3 27 27 H 1.09000 * 109.46934 * 299.99783 * 1 2 3 28 28 H 1.09002 * 109.47239 * 59.99401 * 1 2 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47359 * 60.00117 * 5 2 1 31 31 H 1.08996 * 109.47050 * 299.99376 * 5 2 1 32 32 H 1.09002 * 109.46917 * 180.02562 * 6 5 2 33 33 H 1.08994 * 109.47222 * 59.99966 * 6 5 2 34 34 H 1.08994 * 109.47573 * 300.00187 * 7 6 5 35 35 H 1.00900 * 111.00053 * 31.04682 * 8 7 6 36 36 H 1.08998 * 109.46720 * 60.00340 * 9 8 7 37 37 H 1.08996 * 109.47268 * 299.99941 * 9 8 7 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 43 43 H 1.09001 * 109.47135 * 59.98944 * 25 7 6 44 44 H 1.09000 * 109.47334 * 179.97438 * 25 7 6 45 45 H 1.09008 * 109.47072 * 299.99692 * 26 2 1 46 46 H 1.08997 * 109.47315 * 59.99440 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 6 2.0400 -0.7213 1.2492 6 6 3.5701 -0.7207 1.2495 7 6 4.0805 -1.4416 0.0002 8 7 5.5495 -1.4416 0.0007 9 6 6.0763 -2.5648 -0.7860 10 6 7.5827 -2.5314 -0.7629 11 6 8.2727 -3.2037 0.2293 12 6 9.6532 -3.1755 0.2530 13 6 10.3486 -2.4706 -0.7208 14 8 11.7057 -2.4414 -0.7005 15 6 12.3207 -3.2096 0.2212 16 1 11.7363 -3.7476 0.9528 17 6 13.7038 -3.3088 0.2297 18 7 14.4158 -2.6538 -0.6618 19 14 14.5559 -4.3736 1.5062 20 1 14.0962 -5.7786 1.3655 21 1 16.0255 -4.3112 1.3017 22 1 14.2234 -3.8779 2.8660 23 6 9.6528 -1.7912 -1.7122 24 6 8.2724 -1.8280 -1.7336 25 6 3.5705 -0.7203 -1.2490 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9334 -1.2349 2.1392 33 1 3.9330 0.3071 1.2497 34 1 3.7175 -2.4694 -0.0001 35 1 5.9108 -1.4590 0.9427 36 1 5.7272 -2.4826 -1.8153 37 1 5.7267 -3.5040 -0.3576 38 1 7.7313 -3.7521 0.9861 39 1 10.1914 -3.7011 1.0279 40 1 15.3832 -2.7229 -0.6556 41 1 10.1906 -1.2385 -2.4682 42 1 7.7308 -1.3036 -2.5070 43 1 3.9334 0.3075 -1.2487 44 1 3.9345 -1.2337 -2.1390 45 1 1.6766 -1.7489 -1.2493 46 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823830899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:43 Heat of formation + Delta-G solvation = 4.154877 kcal Electronic energy + Delta-G solvation = -24915.493586 eV Core-core repulsion = 21383.784176 eV Total energy + Delta-G solvation = -3531.709411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18022 -39.03056 -37.18253 -36.21725 -35.00006 -32.44937 -31.79774 -31.28032 -30.14370 -29.11618 -26.24864 -25.33466 -24.04411 -23.14860 -22.61516 -21.92726 -20.67142 -20.33322 -17.96787 -17.12856 -16.90194 -15.93653 -15.32839 -15.27445 -14.94154 -14.84147 -14.52395 -14.19476 -14.04087 -13.75407 -13.56291 -13.43771 -13.31660 -13.02015 -12.96024 -12.67903 -12.49999 -12.42545 -12.27387 -12.19877 -11.81632 -11.76763 -11.58325 -11.44462 -11.26639 -11.07140 -10.84799 -10.73492 -10.64827 -10.44762 -10.40661 -10.35647 -9.32808 -8.82660 -8.36099 -8.14819 -7.16784 -6.44203 -4.03150 2.24541 2.30125 2.55470 2.57863 3.13028 3.13934 3.16982 3.50976 3.97057 4.06096 4.19241 4.36213 4.43385 4.66242 4.66994 4.82727 5.00410 5.09122 5.09446 5.10869 5.15807 5.25776 5.30436 5.34596 5.37734 5.41613 5.44534 5.51334 5.60023 5.65936 5.73815 5.81768 5.83907 5.85454 5.93432 5.98548 6.13558 6.23557 6.44782 6.72830 6.91999 7.04200 7.12644 7.28361 7.35581 7.36819 7.44966 7.50440 7.85130 8.00688 9.01182 9.71959 10.73765 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.002116 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.448230 B =13230.222620 C =13412.122397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 C 0.217 3.783 4 N -0.434 5.434 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.088 3.912 8 N -0.683 5.683 9 C 0.120 3.880 10 C -0.185 4.185 11 C -0.066 4.066 12 C -0.235 4.235 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.195 4.195 24 C -0.052 4.052 25 C -0.114 4.114 26 C -0.107 4.107 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.343 0.657 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.301 -0.905 2.194 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 C -0.101 4.101 4 N -0.108 5.108 5 C -0.143 4.143 6 C -0.166 4.166 7 C -0.022 4.022 8 N -0.315 5.315 9 C -0.008 4.008 10 C -0.186 4.186 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.214 4.214 24 C -0.070 4.070 25 C -0.152 4.152 26 C -0.146 4.146 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.235 1.331 1.482 26.310 hybrid contribution 0.243 -1.632 1.300 2.101 sum -25.992 -0.301 2.782 26.142 Atomic orbital electron populations 1.21889 0.91513 1.03581 1.03063 1.18409 0.96238 0.83504 0.98604 1.29002 0.93197 0.94564 0.93351 1.81245 1.08726 1.12730 1.08144 1.21622 0.95881 1.01093 0.95656 1.21800 0.94869 1.02114 0.97839 1.21512 0.88476 0.97585 0.94634 1.60553 1.05535 1.46356 1.19012 1.20650 0.91779 0.90472 0.97928 1.19118 0.93526 1.06196 0.99806 1.20576 0.93620 0.97607 0.96654 1.21111 0.94143 1.07466 1.02711 1.19409 0.84936 0.92716 0.92758 1.83980 1.12907 1.58707 1.52519 1.21269 0.89908 1.26003 1.09661 0.89162 1.25292 0.95426 0.97701 0.98137 1.70028 1.06765 1.39496 1.33457 0.85784 0.78318 0.79615 0.79722 1.19527 1.20280 1.19523 1.20228 0.93539 1.06788 1.00844 1.20461 0.92741 0.96573 0.97274 1.21619 0.93394 1.01939 0.98263 1.21692 0.96554 1.00914 0.95449 0.91701 0.91631 0.90363 0.89661 0.90823 0.91188 0.91108 0.93628 0.83828 0.91201 0.95469 0.87972 0.85686 0.91972 0.86608 0.87129 0.91332 0.91136 0.89779 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 8.43 37.16 0.31 -0.20 16 2 C 0.04 0.21 0.72 -157.30 -0.11 0.09 16 3 C 0.22 2.09 11.36 -20.76 -0.24 1.85 16 4 N -0.43 -5.61 18.54 42.16 0.78 -4.82 16 5 C -0.10 -0.54 4.71 -26.73 -0.13 -0.67 16 6 C -0.13 -0.99 4.97 -26.73 -0.13 -1.13 16 7 C 0.09 0.77 2.49 -67.71 -0.17 0.60 16 8 N -0.68 -8.05 6.30 -107.99 -0.68 -8.73 16 9 C 0.12 1.53 5.61 -4.98 -0.03 1.50 16 10 C -0.19 -3.09 5.40 -104.58 -0.56 -3.65 16 11 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 12 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 13 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 15 C -0.39 -11.02 9.49 30.89 0.29 -10.72 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 19 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 25 C -0.11 -0.98 5.20 -26.70 -0.14 -1.11 16 26 C -0.11 -0.60 4.71 -26.70 -0.13 -0.73 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.07 0.71 7.23 -51.93 -0.38 0.34 16 34 H 0.05 0.36 7.80 -51.93 -0.40 -0.04 16 35 H 0.34 4.10 8.34 -39.29 -0.33 3.77 16 36 H 0.07 0.85 7.38 -51.93 -0.38 0.47 16 37 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.07 0.76 7.22 -51.93 -0.38 0.38 16 44 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 45 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -32.39 374.76 -8.44 -40.84 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.02 Total: 3.93 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.91 Total: -22.57 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.86 Total: -38.26 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.39 -8.44 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823830899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.990 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds