Wall clock time and date at job start Tue Mar 31 2020 10:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47195 * 109.46848 * 2 1 4 4 N 2.60800 * 109.47109 * 0.02562 * 2 1 3 5 5 C 1.52997 * 109.46926 * 120.00192 * 2 1 3 6 6 C 1.53008 * 109.46604 * 180.02562 * 5 2 1 7 7 C 1.53002 * 109.46777 * 299.99563 * 6 5 2 8 8 N 1.46907 * 109.46794 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99930 * 155.00220 * 8 7 6 10 10 C 1.50695 * 109.46891 * 179.97438 * 9 8 7 11 11 C 1.38299 * 119.93247 * 90.00141 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 C 1.52997 * 109.47197 * 60.00800 * 7 6 5 26 26 C 1.52997 * 109.46915 * 240.00350 * 2 1 3 27 27 H 1.09000 * 109.46934 * 299.99783 * 1 2 3 28 28 H 1.09002 * 109.47239 * 59.99401 * 1 2 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47359 * 60.00117 * 5 2 1 31 31 H 1.08996 * 109.47050 * 299.99376 * 5 2 1 32 32 H 1.09002 * 109.46917 * 180.02562 * 6 5 2 33 33 H 1.08994 * 109.47222 * 59.99966 * 6 5 2 34 34 H 1.08994 * 109.47573 * 300.00187 * 7 6 5 35 35 H 1.00900 * 111.00053 * 31.04682 * 8 7 6 36 36 H 1.08998 * 109.46720 * 60.00340 * 9 8 7 37 37 H 1.08996 * 109.47268 * 299.99941 * 9 8 7 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 43 43 H 1.09001 * 109.47135 * 59.98944 * 25 7 6 44 44 H 1.09000 * 109.47334 * 179.97438 * 25 7 6 45 45 H 1.09008 * 109.47072 * 299.99692 * 26 2 1 46 46 H 1.08997 * 109.47315 * 59.99440 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3878 0.0000 4 7 2.3994 2.4588 0.0011 5 6 2.0400 -0.7213 1.2492 6 6 3.5701 -0.7207 1.2495 7 6 4.0805 -1.4416 0.0002 8 7 5.5495 -1.4416 0.0007 9 6 6.0763 -2.5648 -0.7860 10 6 7.5827 -2.5314 -0.7629 11 6 8.2727 -3.2037 0.2293 12 6 9.6532 -3.1755 0.2530 13 6 10.3486 -2.4706 -0.7208 14 8 11.7057 -2.4414 -0.7005 15 6 12.3207 -3.2096 0.2212 16 1 11.7363 -3.7476 0.9528 17 6 13.7038 -3.3088 0.2297 18 7 14.4158 -2.6538 -0.6618 19 14 14.5559 -4.3736 1.5062 20 1 14.0962 -5.7786 1.3655 21 1 16.0255 -4.3112 1.3017 22 1 14.2234 -3.8779 2.8660 23 6 9.6528 -1.7912 -1.7122 24 6 8.2724 -1.8280 -1.7336 25 6 3.5705 -0.7203 -1.2490 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 1.2492 31 1 1.6767 -0.2074 2.1392 32 1 3.9334 -1.2349 2.1392 33 1 3.9330 0.3071 1.2497 34 1 3.7175 -2.4694 -0.0001 35 1 5.9108 -1.4590 0.9427 36 1 5.7272 -2.4826 -1.8153 37 1 5.7267 -3.5040 -0.3576 38 1 7.7313 -3.7521 0.9861 39 1 10.1914 -3.7011 1.0279 40 1 15.3832 -2.7229 -0.6556 41 1 10.1906 -1.2385 -2.4682 42 1 7.7308 -1.3036 -2.5070 43 1 3.9334 0.3075 -1.2487 44 1 3.9345 -1.2337 -2.1390 45 1 1.6766 -1.7489 -1.2493 46 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823830899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:42 Heat of formation + Delta-G solvation = -16.270369 kcal Electronic energy + Delta-G solvation = -24916.379292 eV Core-core repulsion = 21383.784176 eV Total energy + Delta-G solvation = -3532.595116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89278 -40.61264 -38.63175 -37.28331 -35.88645 -34.31642 -32.81047 -31.81760 -31.74426 -30.32767 -27.60036 -26.62999 -25.04565 -23.74718 -23.56893 -23.29119 -21.85843 -21.30051 -19.83581 -18.85115 -17.63432 -16.88593 -16.39514 -16.35355 -16.04095 -15.80899 -15.70562 -15.60404 -15.41383 -15.18048 -14.60887 -14.45071 -14.28651 -14.10252 -13.88993 -13.67491 -13.64647 -13.44707 -13.19289 -13.05104 -12.92674 -12.75697 -12.45056 -12.44316 -12.28626 -12.19875 -12.15282 -11.98487 -11.90487 -11.64890 -11.20501 -11.16017 -10.94050 -10.77556 -9.76492 -9.23703 -8.88295 -8.46851 -6.15284 0.61723 0.69635 1.34383 1.45527 1.51139 1.83143 1.86455 2.17960 2.78862 2.95298 3.12430 3.45527 3.54080 3.71033 3.85777 3.99882 4.04998 4.08196 4.15906 4.20986 4.30135 4.49807 4.52651 4.54895 4.61420 4.63486 4.75784 4.81794 4.83640 4.94980 4.96371 4.98875 5.09570 5.11094 5.15726 5.18591 5.28382 5.29942 5.32789 5.39195 5.42881 5.47932 5.59989 5.72413 5.83697 6.03102 6.21565 6.32335 6.56198 6.65386 6.97481 7.79423 8.76361 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.002116 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.448230 B =13230.222620 C =13412.122397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 C 0.240 3.760 4 N -0.506 5.506 5 C -0.099 4.099 6 C -0.127 4.127 7 C 0.091 3.909 8 N -0.701 5.701 9 C 0.125 3.875 10 C -0.157 4.157 11 C -0.061 4.061 12 C -0.243 4.243 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.209 4.209 24 C -0.050 4.050 25 C -0.115 4.115 26 C -0.102 4.102 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.341 0.659 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.703 -3.572 3.452 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 C -0.077 4.077 4 N -0.181 5.181 5 C -0.137 4.137 6 C -0.165 4.165 7 C -0.018 4.018 8 N -0.333 5.333 9 C -0.003 4.003 10 C -0.158 4.158 11 C -0.079 4.079 12 C -0.262 4.262 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.229 4.229 24 C -0.069 4.069 25 C -0.153 4.153 26 C -0.140 4.140 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.157 0.843 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.716 -1.330 2.737 30.867 hybrid contribution 1.233 -0.731 0.828 1.655 sum -29.483 -2.061 3.564 29.769 Atomic orbital electron populations 1.21922 0.89247 1.05507 1.03074 1.18768 0.97840 0.80932 0.99214 1.29952 0.91359 0.95161 0.91249 1.81251 1.11147 1.15215 1.10515 1.21673 0.93733 1.02961 0.95382 1.21783 0.96869 1.00063 0.97803 1.21593 0.86363 0.98944 0.94942 1.60483 1.07869 1.45986 1.18943 1.20641 0.88279 0.92059 0.99299 1.19697 0.96233 1.02485 0.97376 1.20973 0.92038 0.97280 0.97606 1.21247 0.95924 1.07152 1.01907 1.19953 0.84105 0.94911 0.94877 1.83943 1.15154 1.60936 1.54135 1.21792 0.90732 1.26353 1.10097 0.88035 1.26640 0.95885 0.99158 1.00623 1.70186 1.07062 1.42393 1.36411 0.84630 0.76883 0.77835 0.76743 1.18003 1.19710 1.18140 1.20456 0.95177 1.06829 1.00420 1.20831 0.91286 0.96413 0.98355 1.21620 0.95681 0.99736 0.98267 1.21719 0.94166 1.02822 0.95326 0.91706 0.91798 0.87416 0.86280 0.90350 0.90393 0.94427 0.91081 0.83988 0.89980 0.93030 0.84000 0.86356 0.91878 0.87466 0.84342 0.94870 0.91243 0.86395 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.44 8.43 71.98 0.61 0.17 16 2 C 0.04 0.30 0.72 -53.99 -0.04 0.26 16 3 C 0.24 4.42 11.36 89.44 1.02 5.44 16 4 N -0.51 -13.45 18.54 20.00 0.37 -13.08 16 5 C -0.10 -0.62 4.71 30.60 0.14 -0.48 16 6 C -0.13 -1.60 4.97 30.60 0.15 -1.44 16 7 C 0.09 1.23 2.49 44.91 0.11 1.34 16 8 N -0.70 -14.17 6.30 -495.58 -3.12 -17.29 16 9 C 0.13 2.62 5.61 85.56 0.48 3.10 16 10 C -0.16 -4.76 5.40 -19.84 -0.11 -4.87 16 11 C -0.06 -2.01 9.69 22.25 0.22 -1.79 16 12 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 13 C 0.11 5.71 6.65 22.58 0.15 5.86 16 14 O -0.23 -14.51 9.76 -22.72 -0.22 -14.73 16 15 C -0.41 -24.47 9.49 67.92 0.64 -23.83 16 16 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 17 C -0.03 -1.49 5.49 84.84 0.47 -1.03 16 18 N -0.92 -57.64 13.67 21.62 0.30 -57.34 16 19 Si 1.02 43.25 29.55 68.60 2.03 45.27 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 C -0.21 -9.31 9.99 22.39 0.22 -9.09 16 24 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 25 C -0.11 -1.64 5.20 30.61 0.16 -1.48 16 26 C -0.10 -0.74 4.71 30.61 0.14 -0.59 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.04 0.73 7.23 -2.39 -0.02 0.71 16 34 H 0.07 0.68 7.80 -2.39 -0.02 0.66 16 35 H 0.34 7.09 8.34 -89.69 -0.75 6.34 16 36 H 0.08 1.59 7.38 -2.39 -0.02 1.57 16 37 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.03 0.71 7.22 -2.39 -0.02 0.69 16 44 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 45 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -79.33 374.76 4.38 -74.95 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.24 Total: 22.58 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 4.79 Total: -40.36 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.45 Total: -87.72 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.22 Total: -14.73 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -79.33 4.38 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823830899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.684 kcal (2) G-P(sol) polarization free energy of solvation -79.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds