Wall clock time and date at job start Tue Mar 31 2020 11:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46904 * 110.99582 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47017 * 179.97438 * 8 7 6 10 10 C 1.38286 * 119.92938 * 269.72984 * 9 8 7 11 11 C 1.38108 * 120.07428 * 179.72618 * 10 9 8 12 12 C 1.38916 * 119.92395 * 0.54209 * 11 10 9 13 13 N 1.39667 * 120.07095 * 179.74761 * 12 11 10 14 14 C 1.46501 * 120.00001 * 179.97438 * 13 12 11 15 15 C 1.46498 * 120.00465 * 359.97438 * 13 12 11 16 16 C 1.50703 * 109.46866 * 89.99762 * 15 13 12 17 17 H 1.08004 * 120.00157 * 0.02562 * 16 15 13 18 18 C 1.37888 * 119.99925 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99669 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47097 * 90.00173 * 20 18 16 22 22 H 1.48500 * 109.47441 * 209.99951 * 20 18 16 23 23 H 1.48499 * 109.47305 * 330.00604 * 20 18 16 24 24 C 1.38907 * 119.84963 * 359.73165 * 12 11 10 25 25 C 1.38102 * 119.92972 * 359.97438 * 24 12 11 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 1.00897 * 111.00162 * 56.04615 * 7 6 5 35 35 H 1.08998 * 109.47233 * 299.99877 * 8 7 6 36 36 H 1.09004 * 109.47284 * 60.00198 * 8 7 6 37 37 H 1.08000 * 119.96255 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.03517 * 180.26839 * 11 10 9 39 39 H 1.08998 * 109.47520 * 89.99853 * 14 13 12 40 40 H 1.09003 * 109.47391 * 210.00008 * 14 13 12 41 41 H 1.09003 * 109.47058 * 330.00268 * 14 13 12 42 42 H 1.08998 * 109.47557 * 209.99942 * 15 13 12 43 43 H 1.09002 * 109.47013 * 330.00348 * 15 13 12 44 44 H 0.97002 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03486 * 179.97438 * 24 12 11 46 46 H 1.07991 * 119.96562 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 6.3091 -2.8380 1.4501 9 6 6.6695 -3.1193 2.8860 10 6 7.5754 -2.3061 3.5420 11 6 7.9036 -2.5578 4.8597 12 6 7.3313 -3.6361 5.5226 13 7 7.6650 -3.8966 6.8535 14 6 7.0601 -5.0339 7.5513 15 6 8.6201 -3.0327 7.5519 16 6 7.8797 -1.9041 8.2220 17 1 6.8051 -1.8373 8.1366 18 6 8.5741 -0.9567 8.9442 19 7 9.8826 -1.0379 9.0478 20 14 7.6564 0.4426 9.7742 21 1 7.2725 0.0356 11.1498 22 1 8.5325 1.6398 9.8387 23 1 6.4344 0.7647 8.9943 24 6 6.4260 -4.4543 4.8588 25 6 6.0976 -4.1934 3.5431 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 4.3723 -2.3203 1.9176 35 1 6.0616 -3.7729 0.9473 36 1 7.1556 -2.3687 0.9486 37 1 8.0236 -1.4708 3.0246 38 1 8.6079 -1.9197 5.3727 39 1 7.6823 -5.9180 7.4128 40 1 6.9816 -4.8077 8.6147 41 1 6.0661 -5.2221 7.1455 42 1 9.1538 -3.6142 8.3037 43 1 9.3326 -2.6247 6.8349 44 1 10.3712 -0.3712 9.5555 45 1 5.9796 -5.2937 5.3712 46 1 5.3942 -4.8294 3.0264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865723782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:50 Heat of formation + Delta-G solvation = 45.253097 kcal Electronic energy + Delta-G solvation = -24666.202946 eV Core-core repulsion = 21136.275689 eV Total energy + Delta-G solvation = -3529.927258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.68440 -39.05068 -36.76894 -35.20585 -33.29470 -32.76995 -32.20667 -30.43900 -30.21187 -27.91135 -27.73806 -25.60283 -24.24839 -23.33405 -22.03473 -21.88976 -21.52405 -20.27792 -19.57678 -17.07465 -16.55569 -16.41621 -16.36941 -15.80652 -15.14209 -14.72762 -14.70234 -14.35457 -14.19437 -13.71974 -13.60540 -13.48690 -13.21828 -13.00501 -12.91622 -12.87400 -12.54280 -12.45273 -12.15405 -12.05628 -11.80701 -11.63392 -11.39718 -11.24157 -10.94232 -10.72401 -10.68420 -10.24954 -9.97109 -9.89626 -9.75018 -8.89656 -8.54303 -8.49757 -8.34859 -8.25694 -6.46726 -6.01292 -4.16559 1.54026 2.12050 2.20460 2.52245 2.74272 3.27364 3.34293 3.39652 4.14057 4.24542 4.42393 4.48011 4.68393 4.72327 4.93731 4.95737 5.15285 5.17028 5.22371 5.23485 5.30631 5.37258 5.43660 5.55898 5.59871 5.71179 5.76074 5.83088 5.90329 6.02204 6.02974 6.08417 6.27714 6.39433 6.42963 6.44261 6.64086 6.83498 6.96599 7.03981 7.05514 7.17093 7.26713 7.32048 7.38438 7.60782 7.81917 8.16027 8.26918 8.48745 8.92437 9.50319 10.96368 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.002697 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.514710 B =10380.817345 C =11599.251347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.018 4.018 3 C -0.213 4.213 4 C -0.185 4.185 5 C -0.014 4.014 6 C 0.141 3.859 7 N -0.680 5.680 8 C 0.116 3.884 9 C -0.175 4.175 10 C -0.049 4.049 11 C -0.188 4.188 12 C 0.243 3.757 13 N -0.615 5.615 14 C 0.098 3.902 15 C 0.249 3.751 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.222 4.222 25 C -0.067 4.067 26 O -0.178 6.178 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.346 0.654 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.113 0.887 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.893 -2.263 -18.609 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.232 4.232 4 C -0.205 4.205 5 C -0.064 4.064 6 C 0.012 3.988 7 N -0.312 5.312 8 C -0.011 4.011 9 C -0.178 4.178 10 C -0.069 4.069 11 C -0.211 4.211 12 C 0.135 3.865 13 N -0.321 5.321 14 C -0.046 4.046 15 C 0.129 3.871 16 C -0.570 4.570 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.245 4.245 25 C -0.086 4.086 26 O -0.075 6.075 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.164 0.836 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.369 -1.957 -18.216 22.106 hybrid contribution -0.808 0.301 0.470 0.982 sum -13.178 -1.656 -17.746 22.165 Atomic orbital electron populations 1.20286 0.85277 1.04058 1.03273 1.22403 0.93919 0.84246 1.06250 1.21589 0.92891 0.99328 1.09414 1.21567 0.98074 0.93892 1.07014 1.22271 0.82567 0.94774 1.06788 1.20331 0.90993 0.95798 0.91658 1.60642 1.09833 1.49780 1.10992 1.20673 0.92852 0.93381 0.94232 1.19123 1.03760 0.99367 0.95553 1.20644 0.95614 0.96963 0.93651 1.20904 1.05384 0.99776 0.95012 1.17970 0.91485 0.92420 0.84608 1.47110 1.46612 1.29939 1.08404 1.21474 0.96840 0.88472 0.97810 1.19292 0.87329 0.88645 0.91845 1.21580 0.94209 1.09464 1.31726 0.92263 1.24962 0.94852 0.97963 0.96294 1.69931 1.06201 1.35922 1.41375 0.86522 0.79816 0.81605 0.79714 1.20649 1.21061 1.19738 1.20512 1.04694 1.03560 0.95764 1.20508 0.97930 0.96314 0.93896 1.83929 1.16552 1.35226 1.71798 0.90302 0.90617 0.89396 0.83622 0.83377 0.93836 0.88053 0.83568 0.95104 0.90669 0.86960 0.85033 0.94614 0.91445 0.92706 0.95206 0.94583 0.92652 0.86940 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.00 0.38 -0.11 16 2 C -0.02 -0.19 7.32 -35.63 -0.26 -0.45 16 3 C -0.21 -2.31 10.81 -39.71 -0.43 -2.74 16 4 C -0.19 -2.17 10.81 -39.70 -0.43 -2.60 16 5 C -0.01 -0.17 6.83 -35.62 -0.24 -0.41 16 6 C 0.14 1.45 6.22 -4.97 -0.03 1.42 16 7 N -0.68 -8.39 6.48 -116.33 -0.75 -9.14 16 8 C 0.12 1.41 5.81 -4.98 -0.03 1.38 16 9 C -0.18 -2.69 5.40 -104.59 -0.56 -3.26 16 10 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 11 C -0.19 -3.85 9.21 -39.38 -0.36 -4.21 16 12 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 13 N -0.62 -13.27 2.99 -181.00 -0.54 -13.81 16 14 C 0.10 1.73 10.19 59.85 0.61 2.34 16 15 C 0.25 6.27 4.91 -5.19 -0.03 6.24 16 16 C -0.53 -14.61 9.39 -34.43 -0.32 -14.93 16 17 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 25 C -0.07 -1.04 9.69 -39.61 -0.38 -1.42 16 26 O -0.18 -2.21 10.65 5.72 0.06 -2.15 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.35 4.46 8.71 -39.29 -0.34 4.11 16 35 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.97 6.14 -52.48 -0.32 2.64 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 41 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 42 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 46 H 0.10 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -30.60 385.08 -10.29 -40.88 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.08 Total: 5.17 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.49 Total: -18.21 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.56 Total: -48.00 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: 0.06 Total: -2.15 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.60 -10.29 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865723782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.137 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds