Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46904 * 110.99582 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47017 * 179.97438 * 8 7 6 10 10 C 1.38286 * 119.92938 * 269.72984 * 9 8 7 11 11 C 1.38108 * 120.07428 * 179.72618 * 10 9 8 12 12 C 1.38916 * 119.92395 * 0.54209 * 11 10 9 13 13 N 1.39667 * 120.07095 * 179.74761 * 12 11 10 14 14 C 1.46501 * 120.00001 * 179.97438 * 13 12 11 15 15 C 1.46498 * 120.00465 * 359.97438 * 13 12 11 16 16 C 1.50703 * 109.46866 * 89.99762 * 15 13 12 17 17 H 1.08004 * 120.00157 * 0.02562 * 16 15 13 18 18 C 1.37888 * 119.99925 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99669 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47097 * 90.00173 * 20 18 16 22 22 H 1.48500 * 109.47441 * 209.99951 * 20 18 16 23 23 H 1.48499 * 109.47305 * 330.00604 * 20 18 16 24 24 C 1.38907 * 119.84963 * 359.73165 * 12 11 10 25 25 C 1.38102 * 119.92972 * 359.97438 * 24 12 11 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 1.00897 * 111.00162 * 56.04615 * 7 6 5 35 35 H 1.08998 * 109.47233 * 299.99877 * 8 7 6 36 36 H 1.09004 * 109.47284 * 60.00198 * 8 7 6 37 37 H 1.08000 * 119.96255 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.03517 * 180.26839 * 11 10 9 39 39 H 1.08998 * 109.47520 * 89.99853 * 14 13 12 40 40 H 1.09003 * 109.47391 * 210.00008 * 14 13 12 41 41 H 1.09003 * 109.47058 * 330.00268 * 14 13 12 42 42 H 1.08998 * 109.47557 * 209.99942 * 15 13 12 43 43 H 1.09002 * 109.47013 * 330.00348 * 15 13 12 44 44 H 0.97002 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03486 * 179.97438 * 24 12 11 46 46 H 1.07991 * 119.96562 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 6.3091 -2.8380 1.4501 9 6 6.6695 -3.1193 2.8860 10 6 7.5754 -2.3061 3.5420 11 6 7.9036 -2.5578 4.8597 12 6 7.3313 -3.6361 5.5226 13 7 7.6650 -3.8966 6.8535 14 6 7.0601 -5.0339 7.5513 15 6 8.6201 -3.0327 7.5519 16 6 7.8797 -1.9041 8.2220 17 1 6.8051 -1.8373 8.1366 18 6 8.5741 -0.9567 8.9442 19 7 9.8826 -1.0379 9.0478 20 14 7.6564 0.4426 9.7742 21 1 7.2725 0.0356 11.1498 22 1 8.5325 1.6398 9.8387 23 1 6.4344 0.7647 8.9943 24 6 6.4260 -4.4543 4.8588 25 6 6.0976 -4.1934 3.5431 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 4.3723 -2.3203 1.9176 35 1 6.0616 -3.7729 0.9473 36 1 7.1556 -2.3687 0.9486 37 1 8.0236 -1.4708 3.0246 38 1 8.6079 -1.9197 5.3727 39 1 7.6823 -5.9180 7.4128 40 1 6.9816 -4.8077 8.6147 41 1 6.0661 -5.2221 7.1455 42 1 9.1538 -3.6142 8.3037 43 1 9.3326 -2.6247 6.8349 44 1 10.3712 -0.3712 9.5555 45 1 5.9796 -5.2937 5.3712 46 1 5.3942 -4.8294 3.0264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865723782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 28.340520 kcal Electronic energy + Delta-G solvation = -24666.936331 eV Core-core repulsion = 21136.275689 eV Total energy + Delta-G solvation = -3530.660642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50295 -40.45361 -37.99433 -36.50601 -34.76059 -34.09258 -33.10157 -31.88186 -31.35009 -29.65036 -28.79496 -26.93820 -25.68606 -24.42210 -23.41564 -23.00627 -22.70400 -21.15639 -20.95413 -18.64298 -18.25125 -17.61228 -17.25676 -16.96054 -16.66687 -16.03341 -15.80295 -15.58449 -15.35002 -15.30487 -14.77292 -14.57840 -14.29699 -14.12425 -13.98941 -13.74072 -13.72923 -13.51472 -13.33351 -13.18418 -13.07461 -13.02455 -12.83615 -12.68471 -12.54448 -12.48815 -12.22236 -11.91542 -11.74901 -11.40665 -10.81301 -10.64669 -10.44131 -9.66263 -9.43686 -9.16915 -8.36780 -7.80542 -6.37918 0.67992 0.71992 0.88640 1.35773 1.37436 1.48532 1.68212 1.98669 2.33936 2.63429 3.04400 3.05798 3.56749 3.73950 3.98926 4.07226 4.12991 4.15660 4.23834 4.32109 4.43632 4.48578 4.54437 4.63741 4.66680 4.71346 4.72559 4.76240 4.86981 4.88429 4.91017 4.93757 5.01866 5.12655 5.13207 5.20674 5.30693 5.33461 5.59169 5.64912 5.65565 5.70061 5.91755 6.02672 6.06748 6.21919 6.23425 6.37038 6.49927 6.82356 6.93745 7.33865 8.82640 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.002697 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.514710 B =10380.817345 C =11599.251347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.025 4.025 3 C -0.231 4.231 4 C -0.202 4.202 5 C -0.030 4.030 6 C 0.146 3.854 7 N -0.694 5.694 8 C 0.121 3.879 9 C -0.161 4.161 10 C -0.055 4.055 11 C -0.218 4.218 12 C 0.212 3.788 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.266 3.734 16 C -0.541 4.541 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.961 3.039 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.274 1.274 24 C -0.218 4.218 25 C -0.061 4.061 26 O -0.194 6.194 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.342 0.658 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.010 0.990 43 H 0.011 0.989 44 H 0.267 0.733 45 H 0.133 0.867 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.322 -2.673 -20.403 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 C -0.250 4.250 4 C -0.221 4.221 5 C -0.080 4.080 6 C 0.018 3.982 7 N -0.326 5.326 8 C -0.006 4.006 9 C -0.164 4.164 10 C -0.074 4.074 11 C -0.241 4.241 12 C 0.107 3.893 13 N -0.340 5.340 14 C -0.045 4.045 15 C 0.145 3.855 16 C -0.580 4.580 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.786 3.214 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.199 1.199 24 C -0.240 4.240 25 C -0.080 4.080 26 O -0.091 6.091 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.151 0.849 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.815 -2.384 -20.042 25.037 hybrid contribution -0.107 0.431 0.875 0.981 sum -14.922 -1.954 -19.167 24.370 Atomic orbital electron populations 1.20469 0.82684 1.05023 1.04662 1.23164 0.95503 0.83806 1.05063 1.21912 0.92742 1.00435 1.09870 1.21847 0.98857 0.94303 1.07140 1.22572 0.82905 0.95191 1.07312 1.20380 0.90919 0.96297 0.90621 1.60576 1.09736 1.49886 1.12376 1.20657 0.93314 0.94741 0.91899 1.19507 1.01687 0.98099 0.97095 1.20815 0.96213 0.97776 0.92576 1.20797 1.06258 1.00446 0.96588 1.18252 0.93153 0.93547 0.84357 1.46969 1.47060 1.30763 1.09212 1.21603 0.98172 0.87730 0.96992 1.18770 0.87588 0.88449 0.90718 1.21769 0.93690 1.10516 1.32014 0.93434 1.25777 0.95650 1.00362 0.96882 1.70034 1.07537 1.36917 1.42100 0.85511 0.78414 0.78605 0.78900 1.19464 1.20308 1.19862 1.20781 1.03427 1.03271 0.96569 1.20940 0.97641 0.96324 0.93109 1.83925 1.16958 1.36128 1.72111 0.88609 0.90224 0.87823 0.81941 0.82813 0.92384 0.86732 0.84015 0.92694 0.89671 0.85946 0.88793 0.92857 0.92558 0.90358 0.97225 0.97106 0.92363 0.84949 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.42 71.23 0.74 -0.06 16 2 C -0.03 -0.50 7.32 24.83 0.18 -0.32 16 3 C -0.23 -4.71 10.81 22.19 0.24 -4.47 16 4 C -0.20 -4.51 10.81 22.19 0.24 -4.27 16 5 C -0.03 -0.67 6.83 24.84 0.17 -0.50 16 6 C 0.15 2.65 6.22 85.56 0.53 3.18 16 7 N -0.69 -15.30 6.48 -521.96 -3.38 -18.68 16 8 C 0.12 2.54 5.81 85.55 0.50 3.04 16 9 C -0.16 -4.58 5.40 -19.84 -0.11 -4.69 16 10 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 11 C -0.22 -9.33 9.21 22.40 0.21 -9.12 16 12 C 0.21 8.79 6.55 38.22 0.25 9.04 16 13 N -0.63 -28.17 2.99 -726.56 -2.17 -30.35 16 14 C 0.10 3.45 10.19 127.77 1.30 4.75 16 15 C 0.27 14.25 4.91 85.63 0.42 14.67 16 16 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 17 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 18 C 0.01 0.72 5.46 84.66 0.46 1.18 16 19 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 20 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.22 -7.20 9.21 22.40 0.21 -6.99 16 25 C -0.06 -1.70 9.69 22.25 0.22 -1.48 16 26 O -0.19 -4.54 10.65 -2.45 -0.03 -4.57 16 27 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.34 7.94 8.71 -89.70 -0.78 7.16 16 35 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 36 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 37 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.09 4.64 6.14 -2.91 -0.02 4.63 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 42 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 43 H 0.01 0.63 6.20 -2.39 -0.01 0.62 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 46 H 0.14 2.93 8.06 -2.92 -0.02 2.91 16 Total: -1.00 -68.67 385.08 2.94 -65.73 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.19 Total: 24.19 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 6.01 Total: -28.50 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.27 Total: -103.78 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.03 Total: -4.57 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.67 2.94 -65.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865723782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.074 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds