Wall clock time and date at job start Tue Mar 31 2020 10:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38274 * 119.93156 * 2 1 4 4 C 1.38115 * 120.07212 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92441 * 0.02562 * 4 3 2 6 6 N 1.39931 * 120.06625 * 179.97438 * 5 4 3 7 7 C 1.46010 * 118.53012 * 268.55573 * 6 5 4 8 8 C 1.52989 * 110.04032 * 161.86134 * 7 6 5 9 9 N 1.47197 * 108.72442 * 50.29199 * 8 7 6 10 10 C 1.46900 * 110.99981 * 54.37104 * 9 8 7 11 11 C 1.52998 * 109.47068 * 171.50765 * 10 9 8 12 12 C 1.50706 * 115.54797 * 305.45332 * 11 10 9 13 13 H 1.08008 * 119.99666 * 144.43220 * 12 11 10 14 14 C 1.37870 * 120.00174 * 324.42920 * 12 11 10 15 15 N 1.31514 * 120.00097 * 341.16417 * 14 12 11 16 16 Si 1.86802 * 119.99817 * 161.15632 * 14 12 11 17 17 H 1.48491 * 109.47208 * 4.86691 * 16 14 12 18 18 H 1.48509 * 109.46905 * 124.86764 * 16 14 12 19 19 H 1.48502 * 109.47141 * 244.86568 * 16 14 12 20 20 C 1.52992 * 117.50076 * 159.78395 * 11 10 9 21 21 C 1.52997 * 117.49933 * 91.12174 * 11 10 9 22 22 C 1.46896 * 110.17552 * 290.99738 * 9 8 7 23 23 C 1.33708 * 118.53834 * 88.57909 * 6 5 4 24 24 O 1.21283 * 118.63012 * 1.68833 * 23 6 5 25 25 C 1.38869 * 119.86241 * 0.24960 * 5 4 3 26 26 C 1.38116 * 119.92595 * 359.47552 * 25 5 4 27 27 H 1.08994 * 109.47159 * 89.99836 * 1 2 3 28 28 H 1.09004 * 109.47355 * 210.00275 * 1 2 3 29 29 H 1.09003 * 109.46646 * 329.99765 * 1 2 3 30 30 H 1.07996 * 119.96591 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.03837 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.38097 * 282.03647 * 7 6 5 33 33 H 1.08995 * 109.37663 * 41.68912 * 7 6 5 34 34 H 1.09003 * 109.59245 * 170.06291 * 8 7 6 35 35 H 1.08995 * 109.59282 * 290.36724 * 8 7 6 36 36 H 1.09001 * 109.47124 * 291.50341 * 10 9 8 37 37 H 1.08996 * 109.47248 * 51.50680 * 10 9 8 38 38 H 0.96996 * 120.00209 * 185.13915 * 15 14 12 39 39 H 1.09000 * 117.50162 * 359.97438 * 20 11 10 40 40 H 1.09002 * 117.50286 * 145.02326 * 20 11 10 41 41 H 1.09004 * 117.50041 * 214.97962 * 21 11 10 42 42 H 1.08996 * 117.50224 * 359.97438 * 21 11 10 43 43 H 1.09000 * 109.38969 * 290.14539 * 22 9 8 44 44 H 1.08997 * 109.38378 * 170.45749 * 22 9 8 45 45 H 1.08000 * 120.03396 * 179.74827 * 25 5 4 46 46 H 1.08004 * 119.96214 * 180.26974 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2738 -0.0002 0.0005 6 7 5.6731 -0.0002 0.0005 7 6 6.3705 -0.0326 -1.2819 8 6 7.8209 0.4195 -1.1014 9 7 8.4174 -0.3387 0.0103 10 6 8.2749 -1.7851 -0.2027 11 6 9.0846 -2.5385 0.8546 12 6 10.5404 -2.1607 0.9494 13 1 11.0338 -2.1493 1.9102 14 6 11.2424 -1.8297 -0.1901 15 7 10.7861 -2.1871 -1.3706 16 14 12.8416 -0.8735 -0.0571 17 1 13.1950 -0.6965 1.3742 18 1 13.9243 -1.6214 -0.7456 19 1 12.6769 0.4576 -0.6946 20 6 8.7152 -3.9995 1.1187 21 6 8.3687 -2.9235 2.1508 22 6 7.8100 0.0683 1.2845 23 6 6.3119 0.0289 1.1748 24 8 5.6548 0.0228 2.1941 25 6 3.5780 -1.2020 -0.0053 26 6 2.1968 -1.1985 0.0000 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6553 2.1326 -0.0004 31 1 4.1164 2.1380 0.0010 32 1 6.3549 -1.0485 -1.6766 33 1 5.8687 0.6338 -1.9833 34 1 8.3804 0.2270 -2.0169 35 1 7.8460 1.4854 -0.8750 36 1 7.2240 -2.0626 -0.1213 37 1 8.6433 -2.0443 -1.1952 38 1 11.3156 -2.0204 -2.1660 39 1 7.8951 -4.4240 0.5396 40 1 9.5251 -4.6874 1.3615 41 1 8.9508 -2.9039 3.0722 42 1 7.3211 -2.6397 2.2506 43 1 8.1284 1.0814 1.5298 44 1 8.1331 -0.6117 2.0727 45 1 4.1162 -2.1383 -0.0094 46 1 1.6551 -2.1328 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878599054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:38 Heat of formation + Delta-G solvation = 42.372074 kcal Electronic energy + Delta-G solvation = -27153.047878 eV Core-core repulsion = 23622.995690 eV Total energy + Delta-G solvation = -3530.052188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91513 -38.95801 -37.34825 -36.03664 -34.58688 -32.05449 -31.65790 -31.02340 -29.46508 -27.63876 -26.19367 -25.34572 -24.23461 -22.79899 -22.51872 -21.17650 -21.12861 -19.40060 -18.33428 -17.24907 -16.46404 -16.02770 -15.80629 -15.54064 -14.77807 -14.72412 -14.52259 -14.42605 -14.13151 -13.86943 -13.51359 -13.42661 -13.36734 -12.94997 -12.58797 -12.45620 -12.23978 -11.97263 -11.66053 -11.47363 -11.33928 -11.20237 -10.92955 -10.89135 -10.83587 -10.53921 -10.42732 -10.13404 -9.93608 -9.27191 -9.10951 -8.99302 -8.74196 -8.60778 -8.57075 -7.96271 -7.46227 -5.99489 -3.93089 1.19726 1.35165 2.89473 3.07221 3.33935 3.43010 3.47889 3.63778 4.46774 4.53992 4.74451 4.76151 4.89473 4.95341 5.07680 5.17396 5.20305 5.29608 5.35092 5.39343 5.47399 5.52937 5.59450 5.62129 5.74946 5.83980 5.90383 5.97622 6.10738 6.15437 6.21270 6.28308 6.31248 6.49007 6.51738 6.53073 6.60902 6.64003 6.71807 6.93811 7.05872 7.07019 7.34550 7.42797 7.53784 7.77586 7.89703 8.00730 8.43003 8.51892 8.98068 9.64706 11.06346 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.003797 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.235360 B = 7373.047307 C = 7727.418429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.107 4.107 5 C 0.140 3.860 6 N -0.571 5.571 7 C 0.079 3.921 8 C 0.042 3.958 9 N -0.488 5.488 10 C 0.097 3.903 11 C 0.065 3.935 12 C -0.481 4.481 13 H 0.057 0.943 14 C 0.093 3.907 15 N -0.875 5.875 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.202 4.202 21 C -0.221 4.221 22 C 0.041 3.959 23 C 0.493 3.507 24 O -0.548 6.548 25 C -0.105 4.105 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.074 0.926 36 H -0.003 1.003 37 H 0.115 0.885 38 H 0.258 0.742 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 6.005 -3.055 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.126 4.126 5 C 0.051 3.949 6 N -0.303 5.303 7 C -0.044 4.044 8 C -0.088 4.088 9 N -0.210 5.210 10 C -0.030 4.030 11 C 0.064 3.936 12 C -0.518 4.518 13 H 0.075 0.925 14 C -0.110 4.110 15 N -0.511 5.511 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.240 4.240 21 C -0.258 4.258 22 C -0.090 4.090 23 C 0.282 3.718 24 O -0.424 6.424 25 C -0.124 4.124 26 C -0.132 4.132 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.015 0.985 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.066 6.184 -2.692 16.507 hybrid contribution -0.029 0.180 -0.041 0.187 sum -15.095 6.364 -2.733 16.608 Atomic orbital electron populations 1.20775 0.91161 1.02757 1.02191 1.19931 0.96080 0.93138 0.99859 1.20862 0.93472 0.97592 1.01426 1.21267 0.94280 0.97388 0.99685 1.17629 0.83402 0.92979 1.00931 1.45206 1.03454 1.74421 1.07180 1.22318 0.95394 1.02570 0.84136 1.22581 0.89938 0.98572 0.97665 1.62318 1.52797 1.06848 0.99001 1.21825 0.93469 0.84057 1.03644 1.18918 0.94446 0.90576 0.89627 1.20287 0.92494 1.45623 0.93358 0.92495 1.24707 0.97096 0.94198 0.95019 1.69872 1.37774 1.45174 0.98318 0.86644 0.83082 0.80567 0.78112 1.20000 1.21824 1.20725 1.22952 1.01692 0.95372 1.04005 1.23011 0.98944 1.08329 0.95531 1.22615 0.84855 1.04519 0.97060 1.21983 0.93148 0.74539 0.82122 1.90675 1.68001 1.49377 1.34321 1.21352 0.94331 0.97704 0.99009 1.20902 0.93502 0.97665 1.01104 0.91229 0.91551 0.91601 0.85884 0.86078 0.91120 0.90931 0.88202 0.90741 0.98526 0.86686 0.93201 0.92187 0.90301 0.90600 0.91869 0.88226 0.85544 0.85951 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -1.01 5.88 -104.59 -0.62 -1.63 16 3 C -0.11 -1.34 9.69 -39.61 -0.38 -1.72 16 4 C -0.11 -1.46 9.97 -39.39 -0.39 -1.86 16 5 C 0.14 2.18 4.15 -83.69 -0.35 1.83 16 6 N -0.57 -9.35 2.67 -114.29 -0.30 -9.65 16 7 C 0.08 1.14 5.65 -4.31 -0.02 1.11 16 8 C 0.04 0.65 6.03 -3.67 -0.02 0.63 16 9 N -0.49 -9.50 4.65 -236.10 -1.10 -10.60 16 10 C 0.10 2.07 3.28 -3.83 -0.01 2.06 16 11 C 0.07 1.54 1.38 -155.66 -0.21 1.32 16 12 C -0.48 -12.51 8.69 -34.44 -0.30 -12.81 16 13 H 0.06 1.53 7.89 -52.48 -0.41 1.11 16 14 C 0.09 2.40 5.06 -17.82 -0.09 2.31 16 15 N -0.87 -22.62 11.17 55.43 0.62 -22.00 16 16 Si 0.89 20.48 29.58 -169.99 -5.03 15.45 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.20 -4.57 9.96 -26.70 -0.27 -4.83 16 21 C -0.22 -4.87 8.08 -26.70 -0.22 -5.08 16 22 C 0.04 0.77 5.71 -5.19 -0.03 0.74 16 23 C 0.49 9.34 6.81 -11.67 -0.08 9.26 16 24 O -0.55 -12.02 16.80 5.55 0.09 -11.92 16 25 C -0.10 -1.54 9.97 -39.39 -0.39 -1.94 16 26 C -0.11 -1.39 9.69 -39.61 -0.38 -1.77 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.07 1.06 7.06 -51.93 -0.37 0.69 16 33 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.00 -0.07 6.12 -51.93 -0.32 -0.39 16 37 H 0.12 2.70 6.14 -51.93 -0.32 2.39 16 38 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.06 1.38 8.00 -51.93 -0.42 0.96 16 43 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 44 H 0.13 2.63 5.30 -51.93 -0.28 2.36 16 45 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -29.40 368.45 -10.73 -40.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.15 Total: 5.94 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.41 Total: -12.90 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.78 Total: -42.25 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.40 -10.73 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878599054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.499 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds