Wall clock time and date at job start Tue Mar 31 2020 10:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38274 * 119.93156 * 2 1 4 4 C 1.38115 * 120.07212 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92441 * 0.02562 * 4 3 2 6 6 N 1.39931 * 120.06625 * 179.97438 * 5 4 3 7 7 C 1.46010 * 118.53012 * 268.55573 * 6 5 4 8 8 C 1.52989 * 110.04032 * 161.86134 * 7 6 5 9 9 N 1.47197 * 108.72442 * 50.29199 * 8 7 6 10 10 C 1.46900 * 110.99981 * 54.37104 * 9 8 7 11 11 C 1.52998 * 109.47068 * 171.50765 * 10 9 8 12 12 C 1.50706 * 115.54797 * 305.45332 * 11 10 9 13 13 H 1.08008 * 119.99666 * 144.43220 * 12 11 10 14 14 C 1.37870 * 120.00174 * 324.42920 * 12 11 10 15 15 N 1.31514 * 120.00097 * 341.16417 * 14 12 11 16 16 Si 1.86802 * 119.99817 * 161.15632 * 14 12 11 17 17 H 1.48491 * 109.47208 * 4.86691 * 16 14 12 18 18 H 1.48509 * 109.46905 * 124.86764 * 16 14 12 19 19 H 1.48502 * 109.47141 * 244.86568 * 16 14 12 20 20 C 1.52992 * 117.50076 * 159.78395 * 11 10 9 21 21 C 1.52997 * 117.49933 * 91.12174 * 11 10 9 22 22 C 1.46896 * 110.17552 * 290.99738 * 9 8 7 23 23 C 1.33708 * 118.53834 * 88.57909 * 6 5 4 24 24 O 1.21283 * 118.63012 * 1.68833 * 23 6 5 25 25 C 1.38869 * 119.86241 * 0.24960 * 5 4 3 26 26 C 1.38116 * 119.92595 * 359.47552 * 25 5 4 27 27 H 1.08994 * 109.47159 * 89.99836 * 1 2 3 28 28 H 1.09004 * 109.47355 * 210.00275 * 1 2 3 29 29 H 1.09003 * 109.46646 * 329.99765 * 1 2 3 30 30 H 1.07996 * 119.96591 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.03837 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.38097 * 282.03647 * 7 6 5 33 33 H 1.08995 * 109.37663 * 41.68912 * 7 6 5 34 34 H 1.09003 * 109.59245 * 170.06291 * 8 7 6 35 35 H 1.08995 * 109.59282 * 290.36724 * 8 7 6 36 36 H 1.09001 * 109.47124 * 291.50341 * 10 9 8 37 37 H 1.08996 * 109.47248 * 51.50680 * 10 9 8 38 38 H 0.96996 * 120.00209 * 185.13915 * 15 14 12 39 39 H 1.09000 * 117.50162 * 359.97438 * 20 11 10 40 40 H 1.09002 * 117.50286 * 145.02326 * 20 11 10 41 41 H 1.09004 * 117.50041 * 214.97962 * 21 11 10 42 42 H 1.08996 * 117.50224 * 359.97438 * 21 11 10 43 43 H 1.09000 * 109.38969 * 290.14539 * 22 9 8 44 44 H 1.08997 * 109.38378 * 170.45749 * 22 9 8 45 45 H 1.08000 * 120.03396 * 179.74827 * 25 5 4 46 46 H 1.08004 * 119.96214 * 180.26974 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2738 -0.0002 0.0005 6 7 5.6731 -0.0002 0.0005 7 6 6.3705 -0.0326 -1.2819 8 6 7.8209 0.4195 -1.1014 9 7 8.4174 -0.3387 0.0103 10 6 8.2749 -1.7851 -0.2027 11 6 9.0846 -2.5385 0.8546 12 6 10.5404 -2.1607 0.9494 13 1 11.0338 -2.1493 1.9102 14 6 11.2424 -1.8297 -0.1901 15 7 10.7861 -2.1871 -1.3706 16 14 12.8416 -0.8735 -0.0571 17 1 13.1950 -0.6965 1.3742 18 1 13.9243 -1.6214 -0.7456 19 1 12.6769 0.4576 -0.6946 20 6 8.7152 -3.9995 1.1187 21 6 8.3687 -2.9235 2.1508 22 6 7.8100 0.0683 1.2845 23 6 6.3119 0.0289 1.1748 24 8 5.6548 0.0228 2.1941 25 6 3.5780 -1.2020 -0.0053 26 6 2.1968 -1.1985 0.0000 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6553 2.1326 -0.0004 31 1 4.1164 2.1380 0.0010 32 1 6.3549 -1.0485 -1.6766 33 1 5.8687 0.6338 -1.9833 34 1 8.3804 0.2270 -2.0169 35 1 7.8460 1.4854 -0.8750 36 1 7.2240 -2.0626 -0.1213 37 1 8.6433 -2.0443 -1.1952 38 1 11.3156 -2.0204 -2.1660 39 1 7.8951 -4.4240 0.5396 40 1 9.5251 -4.6874 1.3615 41 1 8.9508 -2.9039 3.0722 42 1 7.3211 -2.6397 2.2506 43 1 8.1284 1.0814 1.5298 44 1 8.1331 -0.6117 2.0727 45 1 4.1162 -2.1383 -0.0094 46 1 1.6551 -2.1328 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878599054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:37 Heat of formation + Delta-G solvation = 27.026696 kcal Electronic energy + Delta-G solvation = -27153.713304 eV Core-core repulsion = 23622.995690 eV Total energy + Delta-G solvation = -3530.717614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24792 -40.07028 -38.95448 -37.58996 -35.91774 -34.02981 -32.66349 -31.99611 -30.81578 -29.09730 -27.49497 -27.08460 -25.60917 -23.86530 -23.76464 -22.96169 -22.30161 -21.08916 -19.74792 -18.64138 -18.00936 -17.53563 -17.16106 -16.60669 -16.46967 -16.18138 -15.91905 -15.83479 -15.50184 -15.04037 -14.83075 -14.58398 -14.46863 -14.40028 -14.07113 -13.67617 -13.35287 -13.13476 -12.99846 -12.86261 -12.74161 -12.56989 -12.50187 -12.35076 -12.27275 -12.20654 -12.03484 -11.97643 -11.52039 -11.10393 -11.00584 -10.46467 -10.04166 -9.97329 -9.87623 -9.54895 -8.97613 -7.95912 -5.95162 0.19656 0.36629 1.42889 1.49015 1.55202 1.62859 1.80614 2.55385 2.65520 2.99900 3.23923 3.56137 3.70873 3.84429 3.91031 3.96922 3.98318 4.03062 4.20793 4.34175 4.36320 4.39832 4.44137 4.47246 4.55453 4.62057 4.71846 4.75851 4.80091 4.86278 4.88280 4.90248 4.99606 5.04735 5.09348 5.10888 5.29105 5.30463 5.48697 5.50107 5.53711 5.58964 5.63276 5.97718 6.02433 6.15983 6.24099 6.35094 6.57237 6.97454 7.02848 7.63999 9.08528 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.003797 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.235360 B = 7373.047307 C = 7727.418429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.116 4.116 5 C 0.108 3.892 6 N -0.562 5.562 7 C 0.084 3.916 8 C 0.042 3.958 9 N -0.504 5.504 10 C 0.117 3.883 11 C 0.048 3.952 12 C -0.501 4.501 13 H 0.040 0.960 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.938 3.062 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.204 4.204 21 C -0.203 4.203 22 C 0.046 3.954 23 C 0.494 3.506 24 O -0.585 6.585 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.095 0.905 36 H -0.005 1.005 37 H 0.096 0.904 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.142 7.484 -4.005 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.018 3.982 6 N -0.292 5.292 7 C -0.038 4.038 8 C -0.086 4.086 9 N -0.226 5.226 10 C -0.010 4.010 11 C 0.047 3.953 12 C -0.538 4.538 13 H 0.058 0.942 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.765 3.235 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.201 1.201 20 C -0.243 4.243 21 C -0.241 4.241 22 C -0.085 4.085 23 C 0.283 3.717 24 O -0.465 6.465 25 C -0.146 4.146 26 C -0.136 4.136 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.013 0.987 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.887 7.663 -3.682 18.906 hybrid contribution 0.465 -0.301 0.236 0.602 sum -16.422 7.362 -3.446 18.323 Atomic orbital electron populations 1.20851 0.88420 1.03889 1.03530 1.20375 0.98045 0.92441 0.97773 1.21247 0.92775 0.99136 1.00018 1.21416 0.95363 0.96825 0.99934 1.17876 0.82795 0.94110 1.03375 1.45139 1.04274 1.72848 1.06904 1.22332 0.94824 1.02833 0.83849 1.22658 0.90410 0.99181 0.96365 1.62246 1.53995 1.05935 1.00375 1.21454 0.92618 0.85374 1.01572 1.19055 0.94014 0.91182 0.91004 1.20374 0.93799 1.46743 0.92841 0.94222 1.25145 0.99305 0.94494 0.94771 1.69946 1.38565 1.45293 0.98560 0.85869 0.80401 0.79633 0.77551 1.20604 1.21725 1.20114 1.22962 1.01814 0.95117 1.04384 1.22860 0.98661 1.07511 0.95036 1.22493 0.85069 1.04801 0.96172 1.21906 0.92988 0.74342 0.82471 1.90645 1.68592 1.51545 1.35673 1.21386 0.95610 0.96948 1.00616 1.21189 0.92602 0.99322 1.00445 0.89617 0.90736 0.90243 0.82917 0.85492 0.91985 0.87815 0.88063 0.88629 0.98710 0.88642 0.92977 0.91182 0.90996 0.90768 0.91844 0.86477 0.87873 0.87493 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.62 16 2 C -0.09 -1.70 5.88 -19.84 -0.12 -1.82 16 3 C -0.11 -2.33 9.69 22.25 0.22 -2.12 16 4 C -0.12 -3.00 9.97 22.39 0.22 -2.78 16 5 C 0.11 3.29 4.15 38.15 0.16 3.45 16 6 N -0.56 -18.20 2.67 -634.48 -1.69 -19.89 16 7 C 0.08 2.34 5.65 86.47 0.49 2.83 16 8 C 0.04 1.27 6.03 86.24 0.52 1.79 16 9 N -0.50 -19.53 4.65 -900.88 -4.19 -23.71 16 10 C 0.12 5.08 3.28 86.30 0.28 5.36 16 11 C 0.05 2.31 1.38 -52.93 -0.07 2.24 16 12 C -0.50 -26.44 8.69 25.60 0.22 -26.22 16 13 H 0.04 2.18 7.89 -2.91 -0.02 2.15 16 14 C 0.07 3.36 5.06 84.65 0.43 3.79 16 15 N -0.89 -45.77 11.17 21.44 0.24 -45.53 16 16 Si 0.94 41.92 29.58 68.60 2.03 43.95 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 C -0.20 -9.40 9.96 30.62 0.30 -9.09 16 21 C -0.20 -9.14 8.08 30.62 0.25 -8.90 16 22 C 0.05 1.74 5.71 85.42 0.49 2.23 16 23 C 0.49 18.82 6.81 87.69 0.60 19.42 16 24 O -0.59 -26.11 16.80 -3.04 -0.05 -26.17 16 25 C -0.13 -3.71 9.97 22.39 0.22 -3.49 16 26 C -0.12 -2.71 9.69 22.25 0.22 -2.49 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.81 8.08 -2.38 -0.02 0.79 16 29 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.06 1.85 7.06 -2.39 -0.02 1.83 16 33 H 0.10 2.26 8.11 -2.39 -0.02 2.24 16 34 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 36 H -0.01 -0.22 6.12 -2.39 -0.01 -0.23 16 37 H 0.10 4.54 6.14 -2.39 -0.01 4.53 16 38 H 0.26 12.86 8.32 -92.71 -0.77 12.09 16 39 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 42 H 0.06 2.83 8.00 -2.39 -0.02 2.82 16 43 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.10 4.41 5.30 -2.39 -0.01 4.40 16 45 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 46 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -63.44 368.45 2.44 -61.00 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.96 Total: 26.77 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 5.14 Total: -16.42 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -5.64 Total: -89.14 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -63.44 2.44 -61.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878599054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.031 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds