Wall clock time and date at job start Tue Mar 31 2020 10:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.35348 * 2 1 4 4 C 1.52954 * 109.41848 * 119.82810 * 2 1 3 5 5 C 1.53226 * 109.40489 * 183.70616 * 4 2 1 6 6 C 1.51269 * 108.53329 * 305.36687 * 5 4 2 7 7 C 1.33146 * 120.85183 * 231.32291 * 6 5 4 8 8 C 1.46904 * 120.00364 * 191.48998 * 7 6 5 9 9 O 1.21645 * 119.99690 * 6.83724 * 8 7 6 10 10 N 1.34776 * 120.00639 * 186.83543 * 8 7 6 11 11 C 1.36959 * 119.99302 * 4.96335 * 10 8 7 12 12 H 1.07996 * 120.00565 * 49.98358 * 11 10 8 13 13 C 1.39003 * 119.99832 * 229.97959 * 11 10 8 14 14 N 1.31364 * 119.99597 * 8.24228 * 13 11 10 15 15 Si 1.86797 * 120.00211 * 188.23307 * 13 11 10 16 16 H 1.48495 * 109.47317 * 90.00583 * 15 13 11 17 17 H 1.48505 * 109.47034 * 210.00622 * 15 13 11 18 18 H 1.48499 * 109.47044 * 330.00242 * 15 13 11 19 19 C 1.39329 * 120.00592 * 184.96018 * 10 8 7 20 20 C 1.39087 * 119.70357 * 185.02048 * 19 10 8 21 21 C 1.38370 * 119.10100 * 179.72451 * 20 19 10 22 22 C 1.38835 * 118.49025 * 0.49590 * 21 20 19 23 23 C 1.38150 * 119.31312 * 359.50505 * 22 21 20 24 24 N 1.31869 * 120.85570 * 0.25445 * 23 22 21 25 25 C 1.51267 * 118.29928 * 51.60278 * 6 5 4 26 26 C 1.52960 * 109.40839 * 240.17982 * 2 1 3 27 27 H 1.09007 * 109.46768 * 300.17098 * 1 2 3 28 28 H 1.08990 * 109.47438 * 60.17095 * 1 2 3 29 29 H 1.09004 * 109.47002 * 180.17711 * 1 2 3 30 30 H 1.08995 * 109.47285 * 179.83082 * 3 2 1 31 31 H 1.09006 * 109.47177 * 299.82980 * 3 2 1 32 32 H 1.08997 * 109.47215 * 59.83095 * 3 2 1 33 33 H 1.08994 * 109.48365 * 63.72134 * 4 2 1 34 34 H 1.09000 * 109.49143 * 303.68621 * 4 2 1 35 35 H 1.08997 * 109.62609 * 185.66053 * 5 4 2 36 36 H 1.08999 * 109.78835 * 65.17644 * 5 4 2 37 37 H 1.07999 * 120.00271 * 11.49189 * 7 6 5 38 38 H 0.97004 * 119.99403 * 174.99001 * 14 13 11 39 39 H 1.08009 * 120.44605 * 359.97438 * 20 19 10 40 40 H 1.08001 * 120.75853 * 180.27538 * 21 20 19 41 41 H 1.07999 * 120.34179 * 179.77566 * 22 21 20 42 42 H 1.08000 * 119.56934 * 180.27276 * 23 22 21 43 43 H 1.09004 * 109.62742 * 68.11223 * 25 6 5 44 44 H 1.09003 * 109.62681 * 188.68229 * 25 6 5 45 45 H 1.08993 * 109.48446 * 296.27387 * 26 2 1 46 46 H 1.09004 * 109.48454 * 56.30372 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4435 0.0000 4 6 2.0386 -0.7175 1.2514 5 6 3.5680 -0.6368 1.2984 6 6 4.1185 -1.1832 -0.0003 7 6 5.0639 -2.1207 -0.0004 8 6 5.7636 -2.4581 -1.2472 9 8 5.5698 -1.7988 -2.2510 10 7 6.6203 -3.4981 -1.2791 11 6 6.7623 -4.3021 -0.1795 12 1 5.8891 -4.7112 0.3068 13 6 8.0304 -4.5917 0.3106 14 7 9.0803 -3.9696 -0.1757 15 14 8.2417 -5.8651 1.6608 16 1 8.4430 -7.2041 1.0513 17 1 9.4232 -5.5160 2.4900 18 1 7.0269 -5.8874 2.5146 19 6 7.3614 -3.7553 -2.4306 20 6 8.1643 -4.8892 -2.4945 21 6 8.8905 -5.1356 -3.6463 22 6 8.7964 -4.2305 -4.6948 23 6 7.9790 -3.1246 -4.5624 24 7 7.2946 -2.9183 -3.4543 25 6 3.5719 -0.6326 -1.2989 26 6 2.0383 -0.7174 -1.2517 27 1 -0.3633 0.5165 0.8885 28 1 -0.3634 0.5111 -0.8914 29 1 -0.3633 -1.0277 0.0032 30 1 3.1270 1.4458 0.0030 31 1 1.6752 1.9558 -0.8916 32 1 1.6702 1.9575 0.8884 33 1 1.7304 -1.7626 1.2218 34 1 1.6220 -0.2406 2.1386 35 1 3.9405 -1.2312 2.1327 36 1 3.8792 0.4007 1.4203 37 1 5.3165 -2.6331 0.9161 38 1 9.9557 -4.1175 0.2151 39 1 8.2171 -5.5703 -1.6579 40 1 9.5190 -6.0102 -3.7265 41 1 9.3531 -4.3915 -5.6061 42 1 7.8993 -2.4202 -5.3772 43 1 3.8805 0.4064 -1.4148 44 1 3.9469 -1.2242 -2.1340 45 1 1.7301 -1.7624 -1.2221 46 1 1.6214 -0.2404 -2.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892471155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:42 Heat of formation + Delta-G solvation = 26.200552 kcal Electronic energy + Delta-G solvation = -26769.161426 eV Core-core repulsion = 23238.407988 eV Total energy + Delta-G solvation = -3530.753438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.88364 -39.18483 -37.73565 -35.20857 -33.59491 -32.11166 -30.99767 -30.68946 -29.59380 -28.31070 -27.25221 -25.32244 -24.46626 -22.72713 -22.48422 -21.95456 -20.03501 -19.01339 -18.14865 -16.90329 -16.19978 -15.60331 -15.14993 -14.81633 -14.75844 -14.66677 -14.34536 -14.07130 -13.89111 -13.75439 -13.33462 -13.20578 -12.64772 -12.37566 -12.31353 -12.17956 -11.99767 -11.79441 -11.74685 -11.61323 -11.35308 -11.27167 -11.10997 -11.00903 -10.78636 -10.66741 -10.49544 -10.40932 -10.13368 -9.88175 -9.28970 -8.89132 -8.66329 -8.64315 -8.28150 -7.75046 -6.96535 -6.42906 -4.47606 1.97456 2.47750 2.56010 3.02826 3.09938 3.12329 3.88814 4.31496 4.44939 4.72004 4.82394 4.88886 4.94197 5.27310 5.30183 5.39967 5.49691 5.58219 5.62828 5.69915 5.72983 5.74626 5.74851 5.84560 5.91458 5.97486 6.05423 6.08272 6.11606 6.13215 6.24823 6.27902 6.39290 6.40035 6.42452 6.47643 6.51734 6.66095 6.85980 6.92616 7.10722 7.20544 7.22780 7.28436 7.42102 7.63343 7.98404 8.27555 8.84867 8.93820 9.40877 9.83814 10.45702 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.004372 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.962326 B = 6403.056741 C = 7912.377700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.086 4.086 6 C -0.069 4.069 7 C -0.177 4.177 8 C 0.520 3.480 9 O -0.517 6.517 10 N -0.380 5.380 11 C -0.357 4.357 12 H 0.098 0.902 13 C 0.051 3.949 14 N -0.843 5.843 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.386 3.614 20 C -0.144 4.144 21 C -0.081 4.081 22 C -0.238 4.238 23 C 0.106 3.894 24 N -0.494 5.494 25 C -0.117 4.117 26 C -0.103 4.103 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.276 0.724 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.058 0.942 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 3.018 1.704 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.124 4.124 6 C -0.071 4.071 7 C -0.198 4.198 8 C 0.313 3.687 9 O -0.397 6.397 10 N -0.091 5.091 11 C -0.485 4.485 12 H 0.115 0.885 13 C -0.159 4.159 14 N -0.475 5.475 15 Si 0.744 3.256 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.189 1.189 19 C 0.156 3.844 20 C -0.168 4.168 21 C -0.107 4.107 22 C -0.261 4.261 23 C -0.053 4.053 24 N -0.210 5.210 25 C -0.153 4.153 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.154 0.846 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.427 4.091 1.366 10.366 hybrid contribution 1.118 -1.410 0.890 2.008 sum -8.309 2.680 2.257 9.017 Atomic orbital electron populations 1.21871 0.95160 1.01460 1.01254 1.20558 0.94669 0.95688 0.95876 1.21973 1.01971 0.95241 1.00953 1.21594 0.95043 1.00484 0.96912 1.20865 0.95227 1.01169 0.95092 1.22455 0.94212 0.94582 0.95807 1.22507 0.98478 0.99798 0.98972 1.18930 0.81684 0.79828 0.88283 1.90547 1.63041 1.50122 1.35973 1.41030 1.34583 1.24207 1.09232 1.19367 0.93764 1.29176 1.06185 0.88471 1.25652 0.95478 0.97370 0.97395 1.69948 1.00008 1.38573 1.38999 0.86048 0.78593 0.80474 0.80457 1.19733 1.20512 1.18905 1.18789 0.90977 0.88983 0.85682 1.21515 0.98505 0.98821 0.97977 1.21147 0.98010 0.98392 0.93139 1.21629 1.05390 0.98898 1.00150 1.22258 0.92684 0.95432 0.94909 1.67599 1.23295 1.29810 1.00265 1.21665 0.93345 1.02413 0.97910 1.21718 0.96240 0.99842 0.96244 0.93050 0.92889 0.92864 0.91688 0.93032 0.93261 0.91900 0.92207 0.91244 0.90475 0.85222 0.91348 0.84698 0.86748 0.86970 0.84552 0.91399 0.85759 0.92350 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.46 37.16 0.31 -1.10 16 2 C -0.07 -0.80 0.76 -154.55 -0.12 -0.92 16 3 C -0.14 -1.63 7.58 37.16 0.28 -1.35 16 4 C -0.10 -1.23 4.78 -26.64 -0.13 -1.36 16 5 C -0.09 -1.19 5.50 -27.49 -0.15 -1.35 16 6 C -0.07 -1.20 5.38 -100.56 -0.54 -1.74 16 7 C -0.18 -3.67 8.91 -37.85 -0.34 -4.00 16 8 C 0.52 12.90 7.40 -12.75 -0.09 12.81 16 9 O -0.52 -13.46 11.46 5.24 0.06 -13.40 16 10 N -0.38 -9.87 2.67 -62.02 -0.17 -10.04 16 11 C -0.36 -8.79 7.24 -14.98 -0.11 -8.90 16 12 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 13 C 0.05 1.22 3.55 -17.47 -0.06 1.16 16 14 N -0.84 -21.82 11.18 55.50 0.62 -21.20 16 15 Si 0.92 18.32 29.56 -169.99 -5.03 13.29 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 C 0.39 10.07 6.62 -154.71 -1.02 9.05 16 20 C -0.14 -3.45 7.62 -39.22 -0.30 -3.75 16 21 C -0.08 -1.66 10.17 -39.31 -0.40 -2.06 16 22 C -0.24 -4.63 10.11 -39.39 -0.40 -5.03 16 23 C 0.11 2.28 11.18 -17.57 -0.20 2.08 16 24 N -0.49 -12.66 7.91 -12.36 -0.10 -12.76 16 25 C -0.12 -2.02 4.82 -27.26 -0.13 -2.15 16 26 C -0.10 -1.44 4.80 -26.41 -0.13 -1.57 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.81 4.91 -51.93 -0.25 0.56 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 36 H 0.08 1.01 6.68 -51.93 -0.35 0.66 16 37 H 0.13 2.61 6.94 -52.49 -0.36 2.25 16 38 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.14 3.29 5.54 -52.48 -0.29 2.99 16 40 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.07 1.15 6.67 -51.93 -0.35 0.81 16 44 H 0.13 2.60 4.71 -53.31 -0.25 2.35 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -29.07 355.75 -9.64 -38.71 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.87 Total: 10.21 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.52 Total: -10.18 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.36 Total: -44.00 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.06 Total: -13.40 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.07 -9.64 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.915 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds