Wall clock time and date at job start Tue Mar 31 2020 10:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.35348 * 2 1 4 4 C 1.52954 * 109.41848 * 119.82810 * 2 1 3 5 5 C 1.53226 * 109.40489 * 183.70616 * 4 2 1 6 6 C 1.51269 * 108.53329 * 305.36687 * 5 4 2 7 7 C 1.33146 * 120.85183 * 231.32291 * 6 5 4 8 8 C 1.46904 * 120.00364 * 191.48998 * 7 6 5 9 9 O 1.21645 * 119.99690 * 6.83724 * 8 7 6 10 10 N 1.34776 * 120.00639 * 186.83543 * 8 7 6 11 11 C 1.36959 * 119.99302 * 4.96335 * 10 8 7 12 12 H 1.07996 * 120.00565 * 49.98358 * 11 10 8 13 13 C 1.39003 * 119.99832 * 229.97959 * 11 10 8 14 14 N 1.31364 * 119.99597 * 8.24228 * 13 11 10 15 15 Si 1.86797 * 120.00211 * 188.23307 * 13 11 10 16 16 H 1.48495 * 109.47317 * 90.00583 * 15 13 11 17 17 H 1.48505 * 109.47034 * 210.00622 * 15 13 11 18 18 H 1.48499 * 109.47044 * 330.00242 * 15 13 11 19 19 C 1.39329 * 120.00592 * 184.96018 * 10 8 7 20 20 C 1.39087 * 119.70357 * 185.02048 * 19 10 8 21 21 C 1.38370 * 119.10100 * 179.72451 * 20 19 10 22 22 C 1.38835 * 118.49025 * 0.49590 * 21 20 19 23 23 C 1.38150 * 119.31312 * 359.50505 * 22 21 20 24 24 N 1.31869 * 120.85570 * 0.25445 * 23 22 21 25 25 C 1.51267 * 118.29928 * 51.60278 * 6 5 4 26 26 C 1.52960 * 109.40839 * 240.17982 * 2 1 3 27 27 H 1.09007 * 109.46768 * 300.17098 * 1 2 3 28 28 H 1.08990 * 109.47438 * 60.17095 * 1 2 3 29 29 H 1.09004 * 109.47002 * 180.17711 * 1 2 3 30 30 H 1.08995 * 109.47285 * 179.83082 * 3 2 1 31 31 H 1.09006 * 109.47177 * 299.82980 * 3 2 1 32 32 H 1.08997 * 109.47215 * 59.83095 * 3 2 1 33 33 H 1.08994 * 109.48365 * 63.72134 * 4 2 1 34 34 H 1.09000 * 109.49143 * 303.68621 * 4 2 1 35 35 H 1.08997 * 109.62609 * 185.66053 * 5 4 2 36 36 H 1.08999 * 109.78835 * 65.17644 * 5 4 2 37 37 H 1.07999 * 120.00271 * 11.49189 * 7 6 5 38 38 H 0.97004 * 119.99403 * 174.99001 * 14 13 11 39 39 H 1.08009 * 120.44605 * 359.97438 * 20 19 10 40 40 H 1.08001 * 120.75853 * 180.27538 * 21 20 19 41 41 H 1.07999 * 120.34179 * 179.77566 * 22 21 20 42 42 H 1.08000 * 119.56934 * 180.27276 * 23 22 21 43 43 H 1.09004 * 109.62742 * 68.11223 * 25 6 5 44 44 H 1.09003 * 109.62681 * 188.68229 * 25 6 5 45 45 H 1.08993 * 109.48446 * 296.27387 * 26 2 1 46 46 H 1.09004 * 109.48454 * 56.30372 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4435 0.0000 4 6 2.0386 -0.7175 1.2514 5 6 3.5680 -0.6368 1.2984 6 6 4.1185 -1.1832 -0.0003 7 6 5.0639 -2.1207 -0.0004 8 6 5.7636 -2.4581 -1.2472 9 8 5.5698 -1.7988 -2.2510 10 7 6.6203 -3.4981 -1.2791 11 6 6.7623 -4.3021 -0.1795 12 1 5.8891 -4.7112 0.3068 13 6 8.0304 -4.5917 0.3106 14 7 9.0803 -3.9696 -0.1757 15 14 8.2417 -5.8651 1.6608 16 1 8.4430 -7.2041 1.0513 17 1 9.4232 -5.5160 2.4900 18 1 7.0269 -5.8874 2.5146 19 6 7.3614 -3.7553 -2.4306 20 6 8.1643 -4.8892 -2.4945 21 6 8.8905 -5.1356 -3.6463 22 6 8.7964 -4.2305 -4.6948 23 6 7.9790 -3.1246 -4.5624 24 7 7.2946 -2.9183 -3.4543 25 6 3.5719 -0.6326 -1.2989 26 6 2.0383 -0.7174 -1.2517 27 1 -0.3633 0.5165 0.8885 28 1 -0.3634 0.5111 -0.8914 29 1 -0.3633 -1.0277 0.0032 30 1 3.1270 1.4458 0.0030 31 1 1.6752 1.9558 -0.8916 32 1 1.6702 1.9575 0.8884 33 1 1.7304 -1.7626 1.2218 34 1 1.6220 -0.2406 2.1386 35 1 3.9405 -1.2312 2.1327 36 1 3.8792 0.4007 1.4203 37 1 5.3165 -2.6331 0.9161 38 1 9.9557 -4.1175 0.2151 39 1 8.2171 -5.5703 -1.6579 40 1 9.5190 -6.0102 -3.7265 41 1 9.3531 -4.3915 -5.6061 42 1 7.8993 -2.4202 -5.3772 43 1 3.8805 0.4064 -1.4148 44 1 3.9469 -1.2242 -2.1340 45 1 1.7301 -1.7624 -1.2221 46 1 1.6214 -0.2404 -2.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:41 Heat of formation + Delta-G solvation = 12.695900 kcal Electronic energy + Delta-G solvation = -26769.747032 eV Core-core repulsion = 23238.407988 eV Total energy + Delta-G solvation = -3531.339044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58650 -40.50794 -39.36140 -36.99270 -34.94541 -33.93006 -32.76097 -31.89413 -31.21723 -29.67459 -28.12620 -27.17003 -25.80414 -24.13405 -23.91817 -23.60788 -21.60429 -20.59722 -19.59394 -18.35607 -17.88520 -17.40222 -16.80703 -16.37557 -16.18306 -16.00675 -15.72952 -15.64393 -15.16852 -14.93011 -14.85228 -14.75948 -14.25467 -13.86093 -13.68288 -13.55976 -13.44879 -13.20793 -13.05617 -12.85620 -12.69412 -12.65985 -12.38583 -12.36144 -12.16076 -12.06088 -11.80071 -11.52917 -11.37193 -11.05130 -10.99414 -10.67999 -10.42486 -10.34693 -9.81217 -9.49309 -8.78159 -8.24095 -6.37240 0.31728 0.75614 0.93115 1.44457 1.45566 1.57213 2.21208 2.55109 2.76239 2.93846 3.50466 3.73028 3.84533 3.92455 3.95195 4.10063 4.19927 4.21120 4.41963 4.45630 4.54352 4.55575 4.58531 4.66733 4.72512 4.80686 4.83880 4.89641 4.90957 4.99659 5.06246 5.10164 5.16322 5.19756 5.24268 5.25983 5.32031 5.34556 5.40912 5.43298 5.50470 5.58883 5.63584 5.75098 5.86389 6.00257 6.16450 6.45585 6.99803 7.17031 7.58808 8.02898 8.64649 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.004372 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.962326 B = 6403.056741 C = 7912.377700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.086 4.086 6 C -0.036 4.036 7 C -0.218 4.218 8 C 0.502 3.498 9 O -0.547 6.547 10 N -0.398 5.398 11 C -0.370 4.370 12 H 0.101 0.899 13 C 0.017 3.983 14 N -0.881 5.881 15 Si 0.988 3.012 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.254 1.254 19 C 0.351 3.649 20 C -0.165 4.165 21 C -0.078 4.078 22 C -0.220 4.220 23 C 0.089 3.911 24 N -0.534 5.534 25 C -0.118 4.118 26 C -0.097 4.097 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.275 0.725 39 H 0.123 0.877 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.166 0.834 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 3.076 2.474 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.136 4.136 5 C -0.123 4.123 6 C -0.038 4.038 7 C -0.238 4.238 8 C 0.297 3.703 9 O -0.428 6.428 10 N -0.109 5.109 11 C -0.497 4.497 12 H 0.118 0.882 13 C -0.189 4.189 14 N -0.514 5.514 15 Si 0.809 3.191 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.177 1.177 19 C 0.122 3.878 20 C -0.189 4.189 21 C -0.104 4.104 22 C -0.241 4.241 23 C -0.069 4.069 24 N -0.250 5.250 25 C -0.154 4.154 26 C -0.135 4.135 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.388 4.139 2.130 11.383 hybrid contribution 1.396 -1.348 0.478 1.998 sum -8.991 2.792 2.608 9.769 Atomic orbital electron populations 1.21825 0.93225 1.01874 1.02400 1.20552 0.96157 0.95638 0.94213 1.21961 1.00925 0.94949 1.02215 1.21610 0.93116 1.00721 0.98202 1.20992 0.96834 1.01715 0.92758 1.22940 0.91380 0.91600 0.97871 1.22347 1.01132 1.02996 0.97339 1.19634 0.81752 0.79555 0.89338 1.90524 1.64120 1.51040 1.37147 1.41345 1.34999 1.24789 1.09803 1.19635 0.94402 1.29331 1.06364 0.88180 1.26432 0.94579 0.98655 0.99255 1.70090 1.00398 1.40382 1.40489 0.85019 0.78631 0.77835 0.77572 1.19080 1.20559 1.17746 1.19149 0.92303 0.90191 0.86198 1.21541 0.99689 0.98465 0.99170 1.21624 0.97111 0.99636 0.92050 1.22080 1.03823 0.96982 1.01251 1.22910 0.92525 0.96966 0.94522 1.67560 1.25053 1.30899 1.01515 1.21545 0.95928 1.01510 0.96427 1.21679 0.93393 0.99978 0.98410 0.91297 0.92405 0.92870 0.93289 0.92637 0.91228 0.92310 0.89311 0.90487 0.88908 0.85260 0.91473 0.85936 0.83058 0.82174 0.81715 0.91124 0.89662 0.93198 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.46 71.98 0.61 -1.70 16 2 C -0.07 -1.40 0.76 -52.21 -0.04 -1.44 16 3 C -0.14 -2.87 7.58 71.98 0.55 -2.32 16 4 C -0.10 -2.11 4.78 30.65 0.15 -1.96 16 5 C -0.09 -2.25 5.50 30.10 0.17 -2.09 16 6 C -0.04 -1.29 5.38 -17.23 -0.09 -1.38 16 7 C -0.22 -9.54 8.91 23.40 0.21 -9.33 16 8 C 0.50 26.74 7.40 86.51 0.64 27.38 16 9 O -0.55 -30.59 11.46 -4.17 -0.05 -30.64 16 10 N -0.40 -21.98 2.67 -468.38 -1.25 -23.24 16 11 C -0.37 -19.12 7.24 84.08 0.61 -18.51 16 12 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 13 C 0.02 0.83 3.55 84.95 0.30 1.13 16 14 N -0.88 -47.17 11.18 21.67 0.24 -46.93 16 15 Si 0.99 38.05 29.56 68.60 2.03 40.08 16 16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 19 C 0.35 19.20 6.62 132.94 0.88 20.08 16 20 C -0.16 -8.09 7.62 22.51 0.17 -7.92 16 21 C -0.08 -3.13 10.17 22.44 0.23 -2.90 16 22 C -0.22 -8.08 10.11 22.39 0.23 -7.86 16 23 C 0.09 3.82 11.18 84.67 0.95 4.76 16 24 N -0.53 -28.51 7.91 -193.01 -1.53 -30.04 16 25 C -0.12 -4.20 4.82 30.25 0.15 -4.06 16 26 C -0.10 -2.68 4.80 30.80 0.15 -2.53 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.13 4.91 -2.39 -0.01 1.12 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.93 7.92 -2.39 -0.02 1.92 16 36 H 0.09 2.22 6.68 -2.39 -0.02 2.21 16 37 H 0.13 5.52 6.94 -2.91 -0.02 5.50 16 38 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.12 6.19 5.54 -2.91 -0.02 6.17 16 40 H 0.15 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 43 H 0.07 2.48 6.67 -2.39 -0.02 2.46 16 44 H 0.09 3.84 4.71 -24.24 -0.11 3.73 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -68.50 355.75 6.15 -62.35 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.87 Total: 39.04 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.84 Total: -10.64 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -2.54 Total: -100.20 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -68.50 6.15 -62.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.047 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds