Wall clock time and date at job start Tue Mar 31 2020 10:54:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.35348 * 2 1
4 4 C 1.52954 * 109.41848 * 119.82810 * 2 1 3
5 5 C 1.53226 * 109.40489 * 183.70616 * 4 2 1
6 6 C 1.51269 * 108.53329 * 305.36687 * 5 4 2
7 7 C 1.33146 * 120.85183 * 231.32291 * 6 5 4
8 8 C 1.46904 * 120.00364 * 191.48998 * 7 6 5
9 9 O 1.21645 * 119.99690 * 6.83724 * 8 7 6
10 10 N 1.34776 * 120.00639 * 186.83543 * 8 7 6
11 11 C 1.36959 * 119.99302 * 4.96335 * 10 8 7
12 12 H 1.07996 * 120.00565 * 49.98358 * 11 10 8
13 13 C 1.39003 * 119.99832 * 229.97959 * 11 10 8
14 14 N 1.31364 * 119.99597 * 8.24228 * 13 11 10
15 15 Si 1.86797 * 120.00211 * 188.23307 * 13 11 10
16 16 H 1.48495 * 109.47317 * 90.00583 * 15 13 11
17 17 H 1.48505 * 109.47034 * 210.00622 * 15 13 11
18 18 H 1.48499 * 109.47044 * 330.00242 * 15 13 11
19 19 C 1.39329 * 120.00592 * 184.96018 * 10 8 7
20 20 C 1.39087 * 119.70357 * 185.02048 * 19 10 8
21 21 C 1.38370 * 119.10100 * 179.72451 * 20 19 10
22 22 C 1.38835 * 118.49025 * 0.49590 * 21 20 19
23 23 C 1.38150 * 119.31312 * 359.50505 * 22 21 20
24 24 N 1.31869 * 120.85570 * 0.25445 * 23 22 21
25 25 C 1.51267 * 118.29928 * 51.60278 * 6 5 4
26 26 C 1.52960 * 109.40839 * 240.17982 * 2 1 3
27 27 H 1.09007 * 109.46768 * 300.17098 * 1 2 3
28 28 H 1.08990 * 109.47438 * 60.17095 * 1 2 3
29 29 H 1.09004 * 109.47002 * 180.17711 * 1 2 3
30 30 H 1.08995 * 109.47285 * 179.83082 * 3 2 1
31 31 H 1.09006 * 109.47177 * 299.82980 * 3 2 1
32 32 H 1.08997 * 109.47215 * 59.83095 * 3 2 1
33 33 H 1.08994 * 109.48365 * 63.72134 * 4 2 1
34 34 H 1.09000 * 109.49143 * 303.68621 * 4 2 1
35 35 H 1.08997 * 109.62609 * 185.66053 * 5 4 2
36 36 H 1.08999 * 109.78835 * 65.17644 * 5 4 2
37 37 H 1.07999 * 120.00271 * 11.49189 * 7 6 5
38 38 H 0.97004 * 119.99403 * 174.99001 * 14 13 11
39 39 H 1.08009 * 120.44605 * 359.97438 * 20 19 10
40 40 H 1.08001 * 120.75853 * 180.27538 * 21 20 19
41 41 H 1.07999 * 120.34179 * 179.77566 * 22 21 20
42 42 H 1.08000 * 119.56934 * 180.27276 * 23 22 21
43 43 H 1.09004 * 109.62742 * 68.11223 * 25 6 5
44 44 H 1.09003 * 109.62681 * 188.68229 * 25 6 5
45 45 H 1.08993 * 109.48446 * 296.27387 * 26 2 1
46 46 H 1.09004 * 109.48454 * 56.30372 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0371 1.4435 0.0000
4 6 2.0386 -0.7175 1.2514
5 6 3.5680 -0.6368 1.2984
6 6 4.1185 -1.1832 -0.0003
7 6 5.0639 -2.1207 -0.0004
8 6 5.7636 -2.4581 -1.2472
9 8 5.5698 -1.7988 -2.2510
10 7 6.6203 -3.4981 -1.2791
11 6 6.7623 -4.3021 -0.1795
12 1 5.8891 -4.7112 0.3068
13 6 8.0304 -4.5917 0.3106
14 7 9.0803 -3.9696 -0.1757
15 14 8.2417 -5.8651 1.6608
16 1 8.4430 -7.2041 1.0513
17 1 9.4232 -5.5160 2.4900
18 1 7.0269 -5.8874 2.5146
19 6 7.3614 -3.7553 -2.4306
20 6 8.1643 -4.8892 -2.4945
21 6 8.8905 -5.1356 -3.6463
22 6 8.7964 -4.2305 -4.6948
23 6 7.9790 -3.1246 -4.5624
24 7 7.2946 -2.9183 -3.4543
25 6 3.5719 -0.6326 -1.2989
26 6 2.0383 -0.7174 -1.2517
27 1 -0.3633 0.5165 0.8885
28 1 -0.3634 0.5111 -0.8914
29 1 -0.3633 -1.0277 0.0032
30 1 3.1270 1.4458 0.0030
31 1 1.6752 1.9558 -0.8916
32 1 1.6702 1.9575 0.8884
33 1 1.7304 -1.7626 1.2218
34 1 1.6220 -0.2406 2.1386
35 1 3.9405 -1.2312 2.1327
36 1 3.8792 0.4007 1.4203
37 1 5.3165 -2.6331 0.9161
38 1 9.9557 -4.1175 0.2151
39 1 8.2171 -5.5703 -1.6579
40 1 9.5190 -6.0102 -3.7265
41 1 9.3531 -4.3915 -5.6061
42 1 7.8993 -2.4202 -5.3772
43 1 3.8805 0.4064 -1.4148
44 1 3.9469 -1.2242 -2.1340
45 1 1.7301 -1.7624 -1.2221
46 1 1.6214 -0.2404 -2.1387
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892471155.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:41
Heat of formation + Delta-G solvation = 12.695900 kcal
Electronic energy + Delta-G solvation = -26769.747032 eV
Core-core repulsion = 23238.407988 eV
Total energy + Delta-G solvation = -3531.339044 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.58650 -40.50794 -39.36140 -36.99270 -34.94541 -33.93006 -32.76097 -31.89413
-31.21723 -29.67459 -28.12620 -27.17003 -25.80414 -24.13405 -23.91817 -23.60788
-21.60429 -20.59722 -19.59394 -18.35607 -17.88520 -17.40222 -16.80703 -16.37557
-16.18306 -16.00675 -15.72952 -15.64393 -15.16852 -14.93011 -14.85228 -14.75948
-14.25467 -13.86093 -13.68288 -13.55976 -13.44879 -13.20793 -13.05617 -12.85620
-12.69412 -12.65985 -12.38583 -12.36144 -12.16076 -12.06088 -11.80071 -11.52917
-11.37193 -11.05130 -10.99414 -10.67999 -10.42486 -10.34693 -9.81217 -9.49309
-8.78159 -8.24095 -6.37240 0.31728 0.75614 0.93115 1.44457 1.45566
1.57213 2.21208 2.55109 2.76239 2.93846 3.50466 3.73028 3.84533
3.92455 3.95195 4.10063 4.19927 4.21120 4.41963 4.45630 4.54352
4.55575 4.58531 4.66733 4.72512 4.80686 4.83880 4.89641 4.90957
4.99659 5.06246 5.10164 5.16322 5.19756 5.24268 5.25983 5.32031
5.34556 5.40912 5.43298 5.50470 5.58883 5.63584 5.75098 5.86389
6.00257 6.16450 6.45585 6.99803 7.17031 7.58808 8.02898 8.64649
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.014580 B = 0.004372 C = 0.003538
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.962326 B = 6403.056741 C = 7912.377700
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.066 4.066
3 C -0.143 4.143
4 C -0.099 4.099
5 C -0.086 4.086
6 C -0.036 4.036
7 C -0.218 4.218
8 C 0.502 3.498
9 O -0.547 6.547
10 N -0.398 5.398
11 C -0.370 4.370
12 H 0.101 0.899
13 C 0.017 3.983
14 N -0.881 5.881
15 Si 0.988 3.012
16 H -0.266 1.266
17 H -0.280 1.280
18 H -0.254 1.254
19 C 0.351 3.649
20 C -0.165 4.165
21 C -0.078 4.078
22 C -0.220 4.220
23 C 0.089 3.911
24 N -0.534 5.534
25 C -0.118 4.118
26 C -0.097 4.097
27 H 0.068 0.932
28 H 0.057 0.943
29 H 0.052 0.948
30 H 0.048 0.952
31 H 0.055 0.945
32 H 0.069 0.931
33 H 0.058 0.942
34 H 0.088 0.912
35 H 0.077 0.923
36 H 0.093 0.907
37 H 0.130 0.870
38 H 0.275 0.725
39 H 0.123 0.877
40 H 0.152 0.848
41 H 0.161 0.839
42 H 0.166 0.834
43 H 0.070 0.930
44 H 0.086 0.914
45 H 0.049 0.951
46 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.902 3.076 2.474 10.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.066 4.066
3 C -0.200 4.200
4 C -0.136 4.136
5 C -0.123 4.123
6 C -0.038 4.038
7 C -0.238 4.238
8 C 0.297 3.703
9 O -0.428 6.428
10 N -0.109 5.109
11 C -0.497 4.497
12 H 0.118 0.882
13 C -0.189 4.189
14 N -0.514 5.514
15 Si 0.809 3.191
16 H -0.191 1.191
17 H -0.206 1.206
18 H -0.177 1.177
19 C 0.122 3.878
20 C -0.189 4.189
21 C -0.104 4.104
22 C -0.241 4.241
23 C -0.069 4.069
24 N -0.250 5.250
25 C -0.154 4.154
26 C -0.135 4.135
27 H 0.087 0.913
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.067 0.933
31 H 0.074 0.926
32 H 0.088 0.912
33 H 0.077 0.923
34 H 0.107 0.893
35 H 0.095 0.905
36 H 0.111 0.889
37 H 0.147 0.853
38 H 0.085 0.915
39 H 0.141 0.859
40 H 0.169 0.831
41 H 0.178 0.822
42 H 0.183 0.817
43 H 0.089 0.911
44 H 0.103 0.897
45 H 0.068 0.932
46 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -10.388 4.139 2.130 11.383
hybrid contribution 1.396 -1.348 0.478 1.998
sum -8.991 2.792 2.608 9.769
Atomic orbital electron populations
1.21825 0.93225 1.01874 1.02400 1.20552 0.96157 0.95638 0.94213
1.21961 1.00925 0.94949 1.02215 1.21610 0.93116 1.00721 0.98202
1.20992 0.96834 1.01715 0.92758 1.22940 0.91380 0.91600 0.97871
1.22347 1.01132 1.02996 0.97339 1.19634 0.81752 0.79555 0.89338
1.90524 1.64120 1.51040 1.37147 1.41345 1.34999 1.24789 1.09803
1.19635 0.94402 1.29331 1.06364 0.88180 1.26432 0.94579 0.98655
0.99255 1.70090 1.00398 1.40382 1.40489 0.85019 0.78631 0.77835
0.77572 1.19080 1.20559 1.17746 1.19149 0.92303 0.90191 0.86198
1.21541 0.99689 0.98465 0.99170 1.21624 0.97111 0.99636 0.92050
1.22080 1.03823 0.96982 1.01251 1.22910 0.92525 0.96966 0.94522
1.67560 1.25053 1.30899 1.01515 1.21545 0.95928 1.01510 0.96427
1.21679 0.93393 0.99978 0.98410 0.91297 0.92405 0.92870 0.93289
0.92637 0.91228 0.92310 0.89311 0.90487 0.88908 0.85260 0.91473
0.85936 0.83058 0.82174 0.81715 0.91124 0.89662 0.93198 0.91407
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.31 8.46 71.98 0.61 -1.70 16
2 C -0.07 -1.40 0.76 -52.21 -0.04 -1.44 16
3 C -0.14 -2.87 7.58 71.98 0.55 -2.32 16
4 C -0.10 -2.11 4.78 30.65 0.15 -1.96 16
5 C -0.09 -2.25 5.50 30.10 0.17 -2.09 16
6 C -0.04 -1.29 5.38 -17.23 -0.09 -1.38 16
7 C -0.22 -9.54 8.91 23.40 0.21 -9.33 16
8 C 0.50 26.74 7.40 86.51 0.64 27.38 16
9 O -0.55 -30.59 11.46 -4.17 -0.05 -30.64 16
10 N -0.40 -21.98 2.67 -468.38 -1.25 -23.24 16
11 C -0.37 -19.12 7.24 84.08 0.61 -18.51 16
12 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16
13 C 0.02 0.83 3.55 84.95 0.30 1.13 16
14 N -0.88 -47.17 11.18 21.67 0.24 -46.93 16
15 Si 0.99 38.05 29.56 68.60 2.03 40.08 16
16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16
17 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16
18 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16
19 C 0.35 19.20 6.62 132.94 0.88 20.08 16
20 C -0.16 -8.09 7.62 22.51 0.17 -7.92 16
21 C -0.08 -3.13 10.17 22.44 0.23 -2.90 16
22 C -0.22 -8.08 10.11 22.39 0.23 -7.86 16
23 C 0.09 3.82 11.18 84.67 0.95 4.76 16
24 N -0.53 -28.51 7.91 -193.01 -1.53 -30.04 16
25 C -0.12 -4.20 4.82 30.25 0.15 -4.06 16
26 C -0.10 -2.68 4.80 30.80 0.15 -2.53 16
27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16
28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.05 1.13 4.91 -2.39 -0.01 1.12 16
31 H 0.05 1.06 8.14 -2.38 -0.02 1.05 16
32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.08 1.93 7.92 -2.39 -0.02 1.92 16
36 H 0.09 2.22 6.68 -2.39 -0.02 2.21 16
37 H 0.13 5.52 6.94 -2.91 -0.02 5.50 16
38 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16
39 H 0.12 6.19 5.54 -2.91 -0.02 6.17 16
40 H 0.15 4.81 8.06 -2.91 -0.02 4.79 16
41 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16
42 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16
43 H 0.07 2.48 6.67 -2.39 -0.02 2.46 16
44 H 0.09 3.84 4.71 -24.24 -0.11 3.73 16
45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
46 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16
Total: -1.00 -68.50 355.75 6.15 -62.35
By element:
Atomic # 1 Polarization: 38.17 SS G_CDS: 0.87 Total: 39.04 kcal
Atomic # 6 Polarization: -16.48 SS G_CDS: 5.84 Total: -10.64 kcal
Atomic # 7 Polarization: -97.66 SS G_CDS: -2.54 Total: -100.20 kcal
Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal
Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal
Total: -68.50 6.15 -62.35 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892471155.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.047 kcal
(2) G-P(sol) polarization free energy of solvation -68.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds