Wall clock time and date at job start Tue Mar 31 2020 11:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.57984 * 2 1 4 4 C 1.34781 * 119.99906 * 60.00085 * 3 2 1 5 5 O 1.21589 * 119.99525 * 0.02562 * 4 3 2 6 6 C 1.47637 * 119.99988 * 179.97438 * 4 3 2 7 7 C 1.40018 * 119.89415 * 179.97438 * 6 4 3 8 8 C 1.36319 * 120.10779 * 180.02562 * 7 6 4 9 9 C 1.40891 * 119.88878 * 0.02562 * 8 7 6 10 10 C 1.41108 * 120.09978 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00003 * 26.72717 * 10 9 8 12 12 C 1.40222 * 119.99984 * 206.73078 * 10 9 8 13 13 N 1.30645 * 120.00578 * 203.88666 * 12 10 9 14 14 Si 1.86800 * 120.00023 * 23.88607 * 12 10 9 15 15 H 1.48505 * 109.47323 * 263.30082 * 14 12 10 16 16 H 1.48506 * 109.47316 * 23.29783 * 14 12 10 17 17 H 1.48495 * 109.47577 * 143.29978 * 14 12 10 18 18 C 1.40889 * 119.79408 * 0.25346 * 9 8 7 19 19 C 1.36316 * 119.88872 * 359.50554 * 18 9 8 20 20 C 1.53139 * 109.57849 * 120.26700 * 2 1 3 21 21 N 1.46908 * 109.37223 * 119.94174 * 20 2 1 22 22 C 1.46947 * 111.05728 * 297.99520 * 21 20 2 23 23 C 1.53401 * 109.38204 * 61.89138 * 22 21 20 24 24 C 1.53385 * 109.57788 * 239.73729 * 2 1 3 25 25 C 1.53673 * 108.45539 * 181.22513 * 24 2 1 26 26 C 1.46945 * 111.05523 * 61.99211 * 21 20 2 27 27 H 1.09002 * 109.47131 * 59.99669 * 1 2 3 28 28 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46973 * 299.99714 * 1 2 3 30 30 H 0.97000 * 120.00403 * 239.99834 * 3 2 1 31 31 H 1.08006 * 119.94393 * 359.97438 * 7 6 4 32 32 H 1.07994 * 120.05338 * 179.97438 * 8 7 6 33 33 H 0.97002 * 119.99161 * 353.19053 * 13 12 10 34 34 H 1.07995 * 120.05045 * 179.72463 * 18 9 8 35 35 H 1.08007 * 119.94000 * 180.20770 * 19 18 9 36 36 H 1.08998 * 109.48621 * 239.91061 * 20 2 1 37 37 H 1.09002 * 109.48622 * 359.97370 * 20 2 1 38 38 H 1.08998 * 109.49358 * 181.91602 * 22 21 20 39 39 H 1.08997 * 109.48889 * 301.99118 * 22 21 20 40 40 H 1.09000 * 109.53181 * 240.34122 * 23 22 21 41 41 H 1.08994 * 109.75625 * 120.00192 * 23 22 21 42 42 H 1.09012 * 110.11182 * 60.45941 * 24 2 1 43 43 H 1.09000 * 109.53821 * 299.08576 * 25 24 2 44 44 H 1.08998 * 109.64995 * 178.81004 * 25 24 2 45 45 H 1.08995 * 109.49278 * 58.00234 * 26 21 20 46 46 H 1.09003 * 109.48996 * 178.05500 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0209 1.3802 0.0000 4 6 1.6969 2.2107 1.0109 5 8 0.9975 1.8141 1.9230 6 6 2.1921 3.6016 1.0112 7 6 1.8537 4.4626 2.0622 8 6 2.3081 5.7478 2.0666 9 6 3.1191 6.2094 1.0110 10 6 3.5915 7.5390 1.0108 11 1 3.7218 8.0660 1.9445 12 6 3.8917 8.1762 -0.2017 13 7 4.7345 9.1742 -0.2241 14 14 3.0864 7.5983 -1.7850 15 1 4.0020 6.6701 -2.4959 16 1 1.8176 6.8949 -1.4670 17 1 2.7992 8.7700 -2.6508 18 6 3.4521 5.3409 -0.0473 19 6 2.9970 4.0560 -0.0404 20 6 2.0432 -0.7272 1.2462 21 7 2.8582 -1.8791 0.8372 22 6 2.0594 -2.8456 0.0710 23 6 1.5434 -2.1778 -1.2099 24 6 2.0440 -0.7283 -1.2482 25 6 3.5801 -0.7401 -1.2066 26 6 4.0365 -1.4472 0.0727 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.5792 1.6965 -0.7275 31 1 1.2309 4.1081 2.8703 32 1 2.0462 6.4113 2.8775 33 1 5.0769 9.5385 0.6071 34 1 4.0698 5.6917 -0.8607 35 1 3.2545 3.3886 -0.8496 36 1 2.6504 -0.0450 1.8411 37 1 1.1968 -1.0731 1.8397 38 1 2.6788 -3.7038 -0.1897 39 1 1.2135 -3.1768 0.6733 40 1 0.4534 -2.1879 -1.2125 41 1 1.9156 -2.7158 -2.0816 42 1 1.6941 -0.2223 -2.1482 43 1 3.9528 0.2842 -1.2106 44 1 3.9662 -1.2725 -2.0758 45 1 4.6298 -0.7602 0.6760 46 1 4.6399 -2.3169 -0.1876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892777474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:19 Heat of formation + Delta-G solvation = -35.797843 kcal Electronic energy + Delta-G solvation = -26866.018077 eV Core-core repulsion = 23332.576186 eV Total energy + Delta-G solvation = -3533.441890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37922 -40.43725 -38.99136 -35.84078 -35.77496 -33.24948 -32.83738 -32.16589 -31.76750 -30.90762 -27.67886 -27.32652 -24.42888 -23.95673 -23.67520 -23.06365 -22.43523 -20.95021 -20.17564 -19.22471 -18.26940 -17.58894 -17.15322 -16.73216 -16.44542 -16.25131 -15.73218 -15.69983 -15.66852 -15.02581 -14.51661 -14.40277 -14.24806 -14.09283 -13.91298 -13.69432 -13.47104 -13.18960 -13.12924 -12.97040 -12.89996 -12.85568 -12.55257 -12.47222 -12.35310 -12.07810 -11.90066 -11.82537 -11.34921 -11.29074 -11.11319 -10.98518 -10.49120 -10.22106 -9.82378 -9.71842 -9.37332 -9.05704 -6.71485 0.29483 0.87291 1.34091 1.50978 1.76969 2.01951 2.14531 2.31228 2.69110 3.05541 3.45447 3.48515 3.67175 3.84207 3.96549 4.09222 4.13770 4.20325 4.25059 4.27130 4.30527 4.36330 4.45218 4.59818 4.66094 4.70739 4.77461 4.87418 4.89493 4.97339 4.98767 5.00492 5.03228 5.13437 5.14832 5.21593 5.25402 5.28315 5.37471 5.41407 5.55354 5.63872 5.71703 5.79533 5.98253 6.08803 6.20715 6.27554 6.49166 6.65508 6.73767 7.46024 7.80363 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.003465 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.051221 B = 8077.893239 C = 8493.583692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 N -0.716 5.716 4 C 0.576 3.424 5 O -0.587 6.587 6 C -0.284 4.284 7 C -0.023 4.023 8 C -0.243 4.243 9 C 0.097 3.903 10 C -0.531 4.531 11 H 0.055 0.945 12 C 0.017 3.983 13 N -0.813 5.813 14 Si 1.101 2.899 15 H -0.247 1.247 16 H -0.263 1.263 17 H -0.277 1.277 18 C -0.260 4.260 19 C -0.026 4.026 20 C 0.066 3.934 21 N -0.541 5.541 22 C 0.048 3.952 23 C -0.141 4.141 24 C -0.088 4.088 25 C -0.148 4.148 26 C 0.051 3.949 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.403 0.597 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.285 0.715 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -21.337 -8.136 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 N -0.368 5.368 4 C 0.368 3.632 5 O -0.470 6.470 6 C -0.288 4.288 7 C -0.042 4.042 8 C -0.262 4.262 9 C 0.094 3.906 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.201 4.201 13 N -0.435 5.435 14 Si 0.920 3.080 15 H -0.172 1.172 16 H -0.187 1.187 17 H -0.203 1.203 18 C -0.279 4.279 19 C -0.045 4.045 20 C -0.064 4.064 21 N -0.262 5.262 22 C -0.080 4.080 23 C -0.180 4.180 24 C -0.107 4.107 25 C -0.187 4.187 26 C -0.077 4.077 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.241 0.759 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.415 -21.555 -8.610 23.461 hybrid contribution 0.238 1.457 1.595 2.173 sum -3.176 -20.098 -7.015 21.523 Atomic orbital electron populations 1.22221 0.94298 1.02734 1.02156 1.21081 0.94485 0.80998 0.97097 1.45996 1.54020 1.11620 1.25207 1.18196 0.78593 0.85146 0.81244 1.90622 1.40667 1.77960 1.37746 1.19327 1.13392 0.94597 1.01455 1.20587 0.95221 0.92454 0.95954 1.20849 1.05976 0.96713 1.02681 1.18034 0.87565 0.93105 0.91877 1.20855 1.40289 0.99019 0.95651 0.92703 1.28532 0.91221 0.93827 1.06482 1.70517 1.17486 1.22443 1.33026 0.83268 0.77648 0.76451 0.70639 1.17171 1.18735 1.20300 1.20869 1.09493 0.95071 1.02421 1.20755 0.92984 0.94945 0.95787 1.22399 0.96884 0.91542 0.95550 1.62511 1.08457 1.13577 1.41634 1.22378 0.97714 0.94939 0.92942 1.22312 1.01917 0.93790 0.99959 1.21490 0.96037 0.96953 0.96231 1.22299 0.94771 1.01780 0.99881 1.22222 0.92528 1.00055 0.92944 0.92503 0.90041 0.93153 0.75937 0.87273 0.88146 0.90416 0.86848 0.84558 0.93119 0.91104 0.88996 0.90665 0.90562 0.89188 0.88858 0.92020 0.89125 0.92409 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 7.78 71.98 0.56 -3.21 16 2 C 0.15 3.54 0.52 3.78 0.00 3.55 16 3 N -0.72 -19.99 4.68 -425.15 -1.99 -21.98 16 4 C 0.58 21.33 6.83 86.72 0.59 21.92 16 5 O -0.59 -24.67 13.37 -4.00 -0.05 -24.72 16 6 C -0.28 -11.57 5.89 -19.94 -0.12 -11.69 16 7 C -0.02 -1.02 9.52 22.25 0.21 -0.81 16 8 C -0.24 -11.54 9.73 22.47 0.22 -11.32 16 9 C 0.10 4.82 5.15 -21.28 -0.11 4.71 16 10 C -0.53 -28.05 9.39 23.46 0.22 -27.83 16 11 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 12 C 0.02 0.87 5.33 85.35 0.46 1.32 16 13 N -0.81 -41.89 13.64 21.87 0.30 -41.59 16 14 Si 1.10 44.64 25.00 68.60 1.72 46.36 16 15 H -0.25 -8.91 6.68 99.48 0.66 -8.25 16 16 H -0.26 -10.73 7.02 99.48 0.70 -10.04 16 17 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 18 C -0.26 -11.41 7.30 22.47 0.16 -11.25 16 19 C -0.03 -0.99 9.47 22.25 0.21 -0.78 16 20 C 0.07 1.75 4.57 86.35 0.39 2.14 16 21 N -0.54 -11.42 5.22 -894.60 -4.67 -16.09 16 22 C 0.05 0.73 6.10 86.43 0.53 1.25 16 23 C -0.14 -1.81 5.42 30.86 0.17 -1.64 16 24 C -0.09 -1.45 2.57 -10.31 -0.03 -1.48 16 25 C -0.15 -2.32 5.58 30.86 0.17 -2.15 16 26 C 0.05 0.93 6.09 86.34 0.53 1.46 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.57 6.40 -2.39 -0.02 1.56 16 29 H 0.05 1.57 6.17 -2.39 -0.01 1.56 16 30 H 0.40 9.66 5.37 -92.71 -0.50 9.16 16 31 H 0.11 4.71 7.63 -2.91 -0.02 4.69 16 32 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.28 14.50 8.73 -92.71 -0.81 13.69 16 34 H 0.11 4.77 4.72 -2.91 -0.01 4.76 16 35 H 0.14 3.95 6.37 -2.91 -0.02 3.93 16 36 H 0.05 1.68 7.05 -2.39 -0.02 1.67 16 37 H 0.07 2.00 7.60 -2.39 -0.02 1.98 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.06 1.05 6.90 -2.39 -0.02 1.04 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.04 344.61 -0.12 -60.16 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.41 Total: 33.65 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.17 Total: -35.80 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -6.36 Total: -79.66 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.72 Total: 46.36 kcal Total: -60.04 -0.12 -60.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892777474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.366 kcal (2) G-P(sol) polarization free energy of solvation -60.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds