Wall clock time and date at job start Tue Mar 31 2020 11:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47212 * 2 1 4 4 C 1.38293 * 120.08565 * 90.00220 * 3 2 1 5 5 C 1.37844 * 120.22163 * 180.02562 * 4 3 2 6 6 C 1.39623 * 120.28360 * 359.97429 * 5 4 3 7 7 C 1.38551 * 119.04905 * 0.21242 * 6 5 4 8 8 C 1.38187 * 120.46824 * 0.07440 * 7 6 5 9 9 C 1.51222 * 108.55928 * 180.27894 * 7 6 5 10 10 C 1.53739 * 104.58738 * 359.73126 * 9 7 6 11 11 N 1.39852 * 129.33550 * 180.02562 * 6 5 4 12 12 C 1.34785 * 124.98180 * 0.02562 * 11 6 5 13 13 O 1.21591 * 119.99492 * 4.83122 * 12 11 6 14 14 N 1.34769 * 120.00039 * 184.83044 * 12 11 6 15 15 C 1.46510 * 119.99887 * 185.03598 * 14 12 11 16 16 C 1.52998 * 109.47186 * 184.99645 * 15 14 12 17 17 C 1.50704 * 115.54842 * 54.25103 * 16 15 14 18 18 H 1.08006 * 119.99768 * 215.59389 * 17 16 15 19 19 C 1.37876 * 119.99865 * 35.31934 * 17 16 15 20 20 N 1.31506 * 120.00242 * 355.76830 * 19 17 16 21 21 Si 1.86802 * 119.99494 * 175.77292 * 19 17 16 22 22 H 1.48500 * 109.47067 * 90.00168 * 21 19 17 23 23 H 1.48500 * 109.47033 * 209.99629 * 21 19 17 24 24 H 1.48502 * 109.47478 * 329.99900 * 21 19 17 25 25 C 1.52993 * 117.49994 * 199.92128 * 16 15 14 26 26 C 1.52996 * 117.49733 * 268.58056 * 16 15 14 27 27 H 1.09002 * 109.46644 * 299.99411 * 1 2 3 28 28 H 1.08993 * 109.47437 * 59.99935 * 1 2 3 29 29 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46771 * 239.99817 * 2 1 3 31 31 H 1.08998 * 109.47045 * 120.00339 * 2 1 3 32 32 H 1.08000 * 119.89413 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.85736 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.92289 * 180.29624 * 8 7 6 35 35 H 1.09008 * 110.40917 * 240.95523 * 9 7 6 36 36 H 1.08999 * 110.51416 * 118.56280 * 9 7 6 37 37 H 1.08999 * 110.29640 * 241.07444 * 10 9 7 38 38 H 1.08993 * 110.29555 * 118.93120 * 10 9 7 39 39 H 0.96996 * 120.00888 * 5.03561 * 14 12 11 40 40 H 1.08999 * 109.47006 * 64.99105 * 15 14 12 41 41 H 1.09003 * 109.46810 * 304.99303 * 15 14 12 42 42 H 0.97000 * 120.00097 * 184.99408 * 20 19 17 43 43 H 1.08998 * 117.50173 * 215.00208 * 25 16 15 44 44 H 1.09005 * 117.49750 * 0.02562 * 25 16 15 45 45 H 1.08997 * 117.49862 * 359.97438 * 26 16 15 46 46 H 1.09007 * 117.49595 * 144.97784 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2635 2.0744 1.1966 5 6 2.7225 3.3741 1.1999 6 6 2.9581 4.0407 -0.0041 7 6 2.7197 3.3784 -1.1975 8 6 2.2540 2.0774 -1.1960 9 6 3.0572 4.3094 -2.3404 10 6 3.5186 5.6079 -1.6587 11 7 3.4187 5.3433 -0.2209 12 6 3.7307 6.2242 0.7503 13 8 3.7033 5.8789 1.9159 14 7 4.0731 7.4876 0.4296 15 6 4.5186 8.4134 1.4740 16 6 4.7242 9.8037 0.8693 17 6 3.5425 10.3699 0.1247 18 1 3.6988 10.9752 -0.7560 19 6 2.2619 10.1104 0.5647 20 7 2.0677 9.3019 1.5834 21 14 0.8026 10.9075 -0.2866 22 1 0.3344 10.0315 -1.3905 23 1 -0.2970 11.1002 0.6926 24 1 1.2102 12.2245 -0.8387 25 6 5.6102 10.7850 1.6392 26 6 6.1200 10.1466 0.3448 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0838 1.5648 2.1317 33 1 2.9007 3.8791 2.1378 34 1 2.0757 1.5679 -2.1315 35 1 2.1749 4.4945 -2.9532 36 1 3.8605 3.8928 -2.9480 37 1 2.8649 6.4343 -1.9377 38 1 4.5499 5.8319 -1.9309 39 1 4.0247 7.7840 -0.4927 40 1 5.4583 8.0587 1.8973 41 1 3.7637 8.4665 2.2586 42 1 1.1656 9.0621 1.8473 43 1 5.3385 11.8401 1.6073 44 1 6.0470 10.4400 2.5765 45 1 6.8918 9.3818 0.4310 46 1 6.1836 10.7814 -0.5390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894563659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:51 Heat of formation + Delta-G solvation = 21.794224 kcal Electronic energy + Delta-G solvation = -26290.923212 eV Core-core repulsion = 22759.978701 eV Total energy + Delta-G solvation = -3530.944511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81510 -38.65457 -36.99563 -36.33045 -33.53137 -32.75170 -32.19561 -32.00036 -28.95853 -28.58815 -26.02462 -25.32566 -23.71288 -23.04002 -22.17843 -21.28741 -20.27899 -19.46572 -19.27775 -17.72033 -16.34795 -16.07757 -16.01749 -15.22570 -15.05700 -14.83708 -14.41187 -14.10999 -13.92871 -13.54126 -13.45820 -13.32404 -13.05951 -12.79084 -12.55067 -12.38346 -12.09164 -12.02500 -11.92946 -11.65057 -11.39683 -11.19530 -11.10672 -11.00574 -10.76842 -10.65615 -10.54745 -10.28828 -9.77408 -9.74582 -9.35318 -9.02116 -8.88320 -8.60258 -8.33825 -7.98270 -7.28408 -6.01047 -4.22451 1.53187 1.61668 3.00855 3.18210 3.28762 3.30308 3.70882 4.11013 4.26546 4.40895 4.64366 4.72722 4.88634 4.99149 5.07685 5.14057 5.17878 5.32461 5.38232 5.44664 5.51199 5.56792 5.66601 5.72963 5.79955 5.91114 5.91707 5.96839 6.02019 6.12389 6.20012 6.26474 6.45079 6.49512 6.57483 6.61813 6.67530 6.74536 6.82499 6.85738 7.02257 7.21872 7.30069 7.52207 7.63402 7.64266 7.95745 8.27605 8.66223 8.81321 9.29545 9.41356 10.87154 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003587 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.156880 B = 7804.803646 C = 8277.407082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.089 4.089 5 C -0.135 4.135 6 C 0.184 3.816 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.080 4.080 10 C 0.099 3.901 11 N -0.573 5.573 12 C 0.710 3.290 13 O -0.582 6.582 14 N -0.688 5.688 15 C 0.180 3.820 16 C 0.036 3.964 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.075 3.925 20 N -0.863 5.863 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.197 4.197 26 C -0.212 4.212 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.395 0.605 40 H 0.017 0.983 41 H 0.118 0.882 42 H 0.263 0.737 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -14.553 -7.210 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.086 3.914 7 C -0.156 4.156 8 C -0.093 4.093 9 C -0.117 4.117 10 C -0.024 4.024 11 N -0.298 5.298 12 C 0.412 3.588 13 O -0.460 6.460 14 N -0.338 5.338 15 C 0.057 3.943 16 C 0.035 3.965 17 C -0.537 4.537 18 H 0.079 0.921 19 C -0.130 4.130 20 N -0.499 5.499 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.236 4.236 26 C -0.250 4.250 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.229 0.771 40 H 0.035 0.965 41 H 0.135 0.865 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.018 -14.566 -6.105 15.794 hybrid contribution -0.775 0.849 -0.918 1.471 sum -0.758 -13.717 -7.023 15.429 Atomic orbital electron populations 1.21769 0.95195 1.01194 1.02294 1.20393 0.95782 0.92741 1.02295 1.19594 1.03624 0.96438 0.92885 1.20739 0.98685 0.93871 0.97435 1.20991 1.02383 0.94637 0.97610 1.18189 0.94768 0.83929 0.94469 1.19920 1.06439 0.95372 0.93871 1.20067 0.99317 0.92428 0.97478 1.21011 1.01928 0.92536 0.96206 1.22077 1.02275 0.98614 0.79449 1.45160 1.66565 1.11470 1.06634 1.15647 0.78580 0.81134 0.83440 1.90817 1.59935 1.78428 1.16796 1.44829 1.68199 1.08263 1.12506 1.21019 0.97140 0.85285 0.90852 1.19225 0.88420 0.91711 0.97114 1.20482 0.89067 1.32633 1.11545 0.92122 1.25003 0.98861 0.94677 0.94457 1.69850 1.21567 1.32936 1.25500 0.86577 0.82268 0.79972 0.79149 1.20715 1.21076 1.19799 1.22940 1.07696 0.99402 0.93548 1.22958 1.00490 1.04050 0.97475 0.92554 0.92660 0.92829 0.91514 0.91385 0.86057 0.84078 0.86388 0.89550 0.89565 0.89981 0.90288 0.77076 0.96531 0.86487 0.92633 0.90152 0.91411 0.91367 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.07 -0.69 6.07 -27.88 -0.17 -0.86 16 3 C -0.12 -1.53 5.14 -104.61 -0.54 -2.07 16 4 C -0.09 -1.24 9.68 -39.71 -0.38 -1.63 16 5 C -0.14 -2.35 9.46 -39.21 -0.37 -2.72 16 6 C 0.18 3.23 6.62 -83.57 -0.55 2.68 16 7 C -0.15 -2.17 6.23 -104.27 -0.65 -2.82 16 8 C -0.07 -0.92 9.70 -39.60 -0.38 -1.31 16 9 C -0.08 -0.92 6.93 -27.24 -0.19 -1.11 16 10 C 0.10 1.38 6.39 -3.64 -0.02 1.36 16 11 N -0.57 -10.56 3.13 -118.25 -0.37 -10.93 16 12 C 0.71 15.70 8.42 -86.92 -0.73 14.97 16 13 O -0.58 -14.62 14.51 5.29 0.08 -14.54 16 14 N -0.69 -15.01 4.97 -65.22 -0.32 -15.33 16 15 C 0.18 4.27 4.62 -4.04 -0.02 4.25 16 16 C 0.04 0.84 2.04 -155.66 -0.32 0.52 16 17 C -0.50 -12.55 8.44 -34.44 -0.29 -12.84 16 18 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 19 C 0.07 1.91 5.31 -17.82 -0.09 1.82 16 20 N -0.86 -23.15 10.11 55.43 0.56 -22.59 16 21 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.20 -4.25 9.96 -26.70 -0.27 -4.52 16 26 C -0.21 -4.33 9.92 -26.70 -0.26 -4.60 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.14 2.77 6.29 -52.49 -0.33 2.44 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.40 8.09 7.02 -40.82 -0.29 7.81 16 40 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.12 3.19 5.89 -51.93 -0.31 2.89 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -29.27 373.57 -11.54 -40.81 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.22 Total: 11.63 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.88 Total: -9.78 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.13 Total: -48.86 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.27 -11.54 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.606 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds