Wall clock time and date at job start Tue Mar 31 2020 11:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47212 * 2 1 4 4 C 1.38293 * 120.08565 * 90.00220 * 3 2 1 5 5 C 1.37844 * 120.22163 * 180.02562 * 4 3 2 6 6 C 1.39623 * 120.28360 * 359.97429 * 5 4 3 7 7 C 1.38551 * 119.04905 * 0.21242 * 6 5 4 8 8 C 1.38187 * 120.46824 * 0.07440 * 7 6 5 9 9 C 1.51222 * 108.55928 * 180.27894 * 7 6 5 10 10 C 1.53739 * 104.58738 * 359.73126 * 9 7 6 11 11 N 1.39852 * 129.33550 * 180.02562 * 6 5 4 12 12 C 1.34785 * 124.98180 * 0.02562 * 11 6 5 13 13 O 1.21591 * 119.99492 * 4.83122 * 12 11 6 14 14 N 1.34769 * 120.00039 * 184.83044 * 12 11 6 15 15 C 1.46510 * 119.99887 * 185.03598 * 14 12 11 16 16 C 1.52998 * 109.47186 * 184.99645 * 15 14 12 17 17 C 1.50704 * 115.54842 * 54.25103 * 16 15 14 18 18 H 1.08006 * 119.99768 * 215.59389 * 17 16 15 19 19 C 1.37876 * 119.99865 * 35.31934 * 17 16 15 20 20 N 1.31506 * 120.00242 * 355.76830 * 19 17 16 21 21 Si 1.86802 * 119.99494 * 175.77292 * 19 17 16 22 22 H 1.48500 * 109.47067 * 90.00168 * 21 19 17 23 23 H 1.48500 * 109.47033 * 209.99629 * 21 19 17 24 24 H 1.48502 * 109.47478 * 329.99900 * 21 19 17 25 25 C 1.52993 * 117.49994 * 199.92128 * 16 15 14 26 26 C 1.52996 * 117.49733 * 268.58056 * 16 15 14 27 27 H 1.09002 * 109.46644 * 299.99411 * 1 2 3 28 28 H 1.08993 * 109.47437 * 59.99935 * 1 2 3 29 29 H 1.09003 * 109.46854 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46771 * 239.99817 * 2 1 3 31 31 H 1.08998 * 109.47045 * 120.00339 * 2 1 3 32 32 H 1.08000 * 119.89413 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.85736 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.92289 * 180.29624 * 8 7 6 35 35 H 1.09008 * 110.40917 * 240.95523 * 9 7 6 36 36 H 1.08999 * 110.51416 * 118.56280 * 9 7 6 37 37 H 1.08999 * 110.29640 * 241.07444 * 10 9 7 38 38 H 1.08993 * 110.29555 * 118.93120 * 10 9 7 39 39 H 0.96996 * 120.00888 * 5.03561 * 14 12 11 40 40 H 1.08999 * 109.47006 * 64.99105 * 15 14 12 41 41 H 1.09003 * 109.46810 * 304.99303 * 15 14 12 42 42 H 0.97000 * 120.00097 * 184.99408 * 20 19 17 43 43 H 1.08998 * 117.50173 * 215.00208 * 25 16 15 44 44 H 1.09005 * 117.49750 * 0.02562 * 25 16 15 45 45 H 1.08997 * 117.49862 * 359.97438 * 26 16 15 46 46 H 1.09007 * 117.49595 * 144.97784 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2635 2.0744 1.1966 5 6 2.7225 3.3741 1.1999 6 6 2.9581 4.0407 -0.0041 7 6 2.7197 3.3784 -1.1975 8 6 2.2540 2.0774 -1.1960 9 6 3.0572 4.3094 -2.3404 10 6 3.5186 5.6079 -1.6587 11 7 3.4187 5.3433 -0.2209 12 6 3.7307 6.2242 0.7503 13 8 3.7033 5.8789 1.9159 14 7 4.0731 7.4876 0.4296 15 6 4.5186 8.4134 1.4740 16 6 4.7242 9.8037 0.8693 17 6 3.5425 10.3699 0.1247 18 1 3.6988 10.9752 -0.7560 19 6 2.2619 10.1104 0.5647 20 7 2.0677 9.3019 1.5834 21 14 0.8026 10.9075 -0.2866 22 1 0.3344 10.0315 -1.3905 23 1 -0.2970 11.1002 0.6926 24 1 1.2102 12.2245 -0.8387 25 6 5.6102 10.7850 1.6392 26 6 6.1200 10.1466 0.3448 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0838 1.5648 2.1317 33 1 2.9007 3.8791 2.1378 34 1 2.0757 1.5679 -2.1315 35 1 2.1749 4.4945 -2.9532 36 1 3.8605 3.8928 -2.9480 37 1 2.8649 6.4343 -1.9377 38 1 4.5499 5.8319 -1.9309 39 1 4.0247 7.7840 -0.4927 40 1 5.4583 8.0587 1.8973 41 1 3.7637 8.4665 2.2586 42 1 1.1656 9.0621 1.8473 43 1 5.3385 11.8401 1.6073 44 1 6.0470 10.4400 2.5765 45 1 6.8918 9.3818 0.4310 46 1 6.1836 10.7814 -0.5390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894563659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:50 Heat of formation + Delta-G solvation = 7.635701 kcal Electronic energy + Delta-G solvation = -26291.537172 eV Core-core repulsion = 22759.978701 eV Total energy + Delta-G solvation = -3531.558471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11117 -40.12508 -38.58752 -37.71355 -35.02752 -34.21085 -33.85327 -33.21701 -30.08227 -29.66260 -27.81756 -27.12121 -24.69784 -24.27268 -23.27779 -22.97545 -21.34180 -21.16162 -20.87656 -19.27772 -18.00461 -17.55949 -17.31013 -16.71373 -16.34587 -16.18011 -15.96005 -15.63413 -15.34845 -14.86244 -14.66650 -14.41586 -14.29223 -14.21902 -13.71717 -13.67377 -13.47677 -13.41194 -13.07700 -12.92943 -12.86388 -12.77967 -12.57927 -12.30818 -12.05544 -12.04100 -11.89468 -11.65992 -11.53805 -11.08888 -10.94685 -10.88548 -10.69288 -10.19884 -9.78852 -9.68206 -8.54668 -7.94912 -6.22349 0.39909 0.47174 1.37787 1.43459 1.51322 1.58788 2.18653 2.38824 2.86974 2.92855 3.17662 3.57004 3.62213 3.67984 3.99044 4.14963 4.16619 4.23867 4.26673 4.31164 4.51164 4.51768 4.60633 4.62972 4.65438 4.71999 4.78059 4.83507 4.94315 4.95087 5.00310 5.05713 5.10821 5.15600 5.17955 5.25494 5.38190 5.47146 5.49989 5.51941 5.58090 5.61172 5.75692 5.86536 5.95131 6.10607 6.20188 6.35098 6.78909 7.08373 7.43386 7.62216 8.89292 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003587 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.156880 B = 7804.803646 C = 8277.407082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.095 4.095 5 C -0.164 4.164 6 C 0.136 3.864 7 C -0.144 4.144 8 C -0.071 4.071 9 C -0.069 4.069 10 C 0.088 3.912 11 N -0.577 5.577 12 C 0.703 3.297 13 O -0.626 6.626 14 N -0.683 5.683 15 C 0.193 3.807 16 C 0.006 3.994 17 C -0.503 4.503 18 H 0.062 0.938 19 C 0.034 3.966 20 N -0.889 5.889 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.266 1.266 25 C -0.199 4.199 26 C -0.183 4.183 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.401 0.599 40 H 0.014 0.986 41 H 0.078 0.922 42 H 0.253 0.747 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -16.263 -10.586 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.186 4.186 6 C 0.040 3.960 7 C -0.147 4.147 8 C -0.090 4.090 9 C -0.106 4.106 10 C -0.033 4.033 11 N -0.303 5.303 12 C 0.405 3.595 13 O -0.507 6.507 14 N -0.333 5.333 15 C 0.069 3.931 16 C 0.006 3.994 17 C -0.540 4.540 18 H 0.080 0.920 19 C -0.168 4.168 20 N -0.526 5.526 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.191 1.191 25 C -0.237 4.237 26 C -0.220 4.220 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.120 0.880 34 H 0.175 0.825 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.032 0.968 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.018 -16.294 -9.542 18.883 hybrid contribution -0.758 1.283 0.149 1.497 sum -0.775 -15.012 -9.393 17.725 Atomic orbital electron populations 1.21761 0.94622 1.02322 1.01662 1.20480 0.96092 0.90535 1.03880 1.20037 1.01366 0.97852 0.92069 1.20928 0.98482 0.92689 0.99284 1.20919 1.04815 0.96295 0.96537 1.18570 0.97412 0.84114 0.95879 1.20318 1.04993 0.96033 0.93368 1.20532 0.97748 0.91670 0.99013 1.21112 1.03891 0.90272 0.95340 1.22414 1.03453 1.00285 0.77120 1.45123 1.66125 1.11380 1.07647 1.15862 0.78429 0.81549 0.83673 1.90777 1.61698 1.79249 1.19023 1.44639 1.68374 1.08068 1.12266 1.20657 0.95617 0.86277 0.90559 1.19250 0.89650 0.91629 0.98918 1.20701 0.89763 1.32179 1.11397 0.92025 1.25616 1.01083 0.95060 0.95007 1.70077 1.21017 1.34449 1.27053 0.85704 0.79328 0.79445 0.78067 1.20004 1.22173 1.19063 1.22966 1.07119 0.98936 0.94692 1.22951 0.98455 1.03561 0.97034 0.93847 0.92690 0.90869 0.89256 0.90568 0.84692 0.88009 0.82533 0.87288 0.86347 0.90229 0.88713 0.76370 0.96769 0.90463 0.93738 0.90256 0.90658 0.89734 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.07 -1.09 6.07 29.85 0.18 -0.91 16 3 C -0.11 -2.50 5.14 -19.85 -0.10 -2.61 16 4 C -0.10 -2.70 9.68 22.19 0.21 -2.48 16 5 C -0.16 -6.11 9.46 22.51 0.21 -5.89 16 6 C 0.14 4.90 6.62 38.27 0.25 5.16 16 7 C -0.14 -3.79 6.23 -19.64 -0.12 -3.91 16 8 C -0.07 -1.53 9.70 22.26 0.22 -1.32 16 9 C -0.07 -1.38 6.93 30.26 0.21 -1.17 16 10 C 0.09 2.38 6.39 86.62 0.55 2.93 16 11 N -0.58 -21.93 3.13 -646.30 -2.02 -23.96 16 12 C 0.70 32.89 8.42 179.05 1.51 34.40 16 13 O -0.63 -34.13 14.51 -4.00 -0.06 -34.18 16 14 N -0.68 -30.93 4.97 -478.51 -2.38 -33.31 16 15 C 0.19 9.53 4.62 86.38 0.40 9.93 16 16 C 0.01 0.29 2.04 -52.93 -0.11 0.19 16 17 C -0.50 -25.25 8.44 25.60 0.22 -25.04 16 18 H 0.06 3.03 7.82 -2.91 -0.02 3.00 16 19 C 0.03 1.75 5.31 84.66 0.45 2.20 16 20 N -0.89 -49.69 10.11 21.45 0.22 -49.48 16 21 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 C -0.20 -8.45 9.96 30.61 0.30 -8.15 16 26 C -0.18 -7.15 9.92 30.62 0.30 -6.85 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.10 4.51 6.29 -2.91 -0.02 4.49 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.11 1.73 8.14 -2.38 -0.02 1.72 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.40 16.74 7.02 -92.71 -0.65 16.09 16 40 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 41 H 0.08 4.49 5.89 -2.39 -0.01 4.47 16 42 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 43 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 45 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -67.82 373.57 3.51 -64.31 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.33 Total: 37.84 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.40 Total: -4.91 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.18 Total: -106.74 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.18 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.82 3.51 -64.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.944 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds