Wall clock time and date at job start Tue Mar 31 2020 11:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 115.54970 * 2 1 4 4 C 1.38238 * 120.00316 * 53.08938 * 3 2 1 5 5 C 1.38230 * 120.00728 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99652 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.38231 * 120.00266 * 233.07160 * 3 2 1 9 9 C 1.52999 * 117.49858 * 214.33180 * 2 1 3 10 10 C 1.52997 * 117.49946 * 145.66547 * 2 1 3 11 11 H 1.09003 * 117.49740 * 0.03153 * 10 2 1 12 12 C 1.50699 * 117.49903 * 215.00160 * 10 2 1 13 13 O 1.21286 * 119.99878 * 270.61953 * 12 10 2 14 14 N 1.34775 * 119.99679 * 90.62447 * 12 10 2 15 15 C 1.46957 * 120.59407 * 359.72103 * 14 12 10 16 16 C 1.53815 * 108.40280 * 124.75921 * 15 14 12 17 17 N 1.46966 * 108.57842 * 49.62977 * 16 15 14 18 18 C 1.36937 * 120.59196 * 124.62431 * 17 16 15 19 19 H 1.08002 * 120.00318 * 208.52773 * 18 17 16 20 20 C 1.38812 * 119.99691 * 28.53487 * 18 17 16 21 21 N 1.31614 * 120.00349 * 26.26129 * 20 18 17 22 22 Si 1.86801 * 119.99899 * 206.25965 * 20 18 17 23 23 H 1.48500 * 109.47219 * 59.99802 * 22 20 18 24 24 H 1.48507 * 109.47345 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47080 * 300.00086 * 22 20 18 26 26 C 1.46966 * 118.81320 * 304.65474 * 17 16 15 27 27 C 1.46966 * 120.58986 * 179.97438 * 14 12 10 28 28 H 1.09001 * 109.47341 * 34.41526 * 1 2 3 29 29 H 1.08997 * 109.46862 * 154.41963 * 1 2 3 30 30 H 1.09007 * 109.47201 * 274.41579 * 1 2 3 31 31 H 1.08006 * 119.99402 * 359.97438 * 4 3 2 32 32 H 1.07991 * 120.00605 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00402 * 179.72606 * 6 5 4 34 34 H 1.07996 * 120.00550 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.99889 * 359.97438 * 8 3 2 36 36 H 1.08992 * 117.49840 * 359.97200 * 9 2 1 37 37 H 1.09005 * 117.49702 * 144.99979 * 9 2 1 38 38 H 1.09004 * 109.61048 * 244.53765 * 15 14 12 39 39 H 1.08995 * 109.61149 * 5.04869 * 15 14 12 40 40 H 1.08999 * 109.73898 * 289.84689 * 16 15 14 41 41 H 1.08999 * 109.53732 * 169.29798 * 16 15 14 42 42 H 0.96998 * 120.00341 * 180.02562 * 21 20 18 43 43 H 1.08991 * 109.60711 * 295.47662 * 26 17 16 44 44 H 1.09001 * 109.60376 * 174.97037 * 26 17 16 45 45 H 1.08999 * 109.61510 * 354.95140 * 27 14 12 46 46 H 1.08997 * 109.60689 * 115.29086 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 1.8295 2.2934 0.9572 5 6 2.4260 3.5404 0.9576 6 6 3.3735 3.8535 0.0010 7 6 3.7249 2.9195 -0.9556 8 6 3.1270 1.6731 -0.9569 9 6 2.2365 -1.1207 -0.7654 10 6 2.2365 -1.1206 0.7654 11 1 1.6112 -1.8582 1.2686 12 6 3.5290 -0.7803 1.4615 13 8 4.5827 -0.8883 0.8706 14 7 3.5140 -0.3562 2.7407 15 6 2.2444 -0.2150 3.4671 16 6 2.3288 -1.0461 4.7587 17 7 3.5815 -0.7108 5.4501 18 6 3.5663 -0.2789 6.7495 19 1 4.3441 0.3784 7.1093 20 6 2.5512 -0.6861 7.6043 21 7 1.9268 -1.8245 7.3893 22 14 2.0715 0.3818 9.0600 23 1 1.6188 1.7093 8.5722 24 1 0.9693 -0.2712 9.8111 25 1 3.2446 0.5565 9.9536 26 6 4.8508 -0.8467 4.7219 27 6 4.7668 -0.0214 3.4324 28 1 -0.3634 0.8478 -0.5808 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3634 0.0791 1.0247 31 1 1.0894 2.0485 1.7048 32 1 2.1524 4.2696 1.7056 33 1 3.8364 4.8292 -0.0015 34 1 4.4649 3.1642 -1.7032 35 1 3.4014 0.9433 -1.7044 36 1 1.6113 -1.8582 -1.2685 37 1 3.1714 -0.8746 -1.2689 38 1 2.0788 0.8337 3.7140 39 1 1.4258 -0.5812 2.8475 40 1 2.3189 -2.1083 4.5143 41 1 1.4812 -0.8081 5.4013 42 1 1.2172 -2.1089 7.9864 43 1 5.0204 -1.8946 4.4750 44 1 5.6687 -0.4770 5.3404 45 1 5.6145 -0.2596 2.7898 46 1 4.7784 1.0414 3.6741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900777874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:40 Heat of formation + Delta-G solvation = 45.377592 kcal Electronic energy + Delta-G solvation = -27237.476184 eV Core-core repulsion = 23707.554324 eV Total energy + Delta-G solvation = -3529.921859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50490 -38.90459 -37.23873 -36.31709 -33.78996 -31.40209 -30.99413 -30.60500 -30.18660 -28.68054 -27.01589 -24.55029 -23.33409 -23.16693 -22.55414 -22.12986 -20.33152 -19.52650 -18.52136 -17.47558 -16.57458 -16.04747 -15.55118 -15.32522 -14.85706 -14.68266 -14.60488 -14.14696 -13.77772 -13.73608 -13.42118 -13.34199 -13.25711 -13.16902 -12.79940 -12.60482 -12.27930 -12.19606 -11.75596 -11.64872 -11.44031 -11.10156 -11.05298 -10.79037 -10.78653 -10.52401 -10.32238 -10.29516 -10.11499 -9.97999 -9.83043 -9.31187 -8.85649 -8.60405 -8.57015 -8.17552 -6.74323 -5.89869 -3.27834 1.35735 1.46469 2.90005 3.33993 3.39775 3.40864 3.43880 3.68048 3.91308 4.43678 4.48567 4.64363 4.75290 4.88009 5.00114 5.04780 5.14204 5.19426 5.23277 5.36027 5.46271 5.53765 5.63400 5.69057 5.71434 5.75635 5.80841 5.87550 5.95233 5.99181 6.02399 6.07715 6.11933 6.15086 6.24066 6.34369 6.45441 6.51995 6.55283 6.64973 6.78937 6.92362 7.03318 7.18061 7.31340 7.74702 7.97553 8.32759 8.64177 9.08552 9.73576 10.32403 11.17719 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.004201 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.911019 B = 6663.349743 C = 6954.127579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.049 4.049 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.141 4.141 10 C -0.168 4.168 11 H 0.128 0.872 12 C 0.544 3.456 13 O -0.557 6.557 14 N -0.587 5.587 15 C 0.087 3.913 16 C 0.160 3.840 17 N -0.588 5.588 18 C -0.263 4.263 19 H 0.066 0.934 20 C 0.010 3.990 21 N -0.891 5.891 22 Si 0.895 3.105 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.132 3.868 27 C 0.098 3.902 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.087 0.913 42 H 0.255 0.745 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 6.631 -16.429 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.070 4.070 3 C -0.049 4.049 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.123 4.123 9 C -0.178 4.178 10 C -0.188 4.188 11 H 0.146 0.854 12 C 0.331 3.669 13 O -0.436 6.436 14 N -0.318 5.318 15 C -0.038 4.038 16 C 0.033 3.967 17 N -0.311 5.311 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.005 3.995 27 C -0.026 4.026 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.818 6.482 -16.584 18.027 hybrid contribution -0.344 0.400 1.039 1.165 sum -3.163 6.882 -15.545 17.292 Atomic orbital electron populations 1.21368 0.90624 1.02383 1.02575 1.20240 0.94645 0.87917 1.04227 1.18949 0.96809 0.93325 0.95780 1.20942 0.99995 0.93184 0.97781 1.21107 0.97127 0.96805 0.98698 1.21118 0.98012 0.99383 0.95561 1.21074 0.99879 0.93852 0.99135 1.21020 0.96065 0.96570 0.98600 1.23217 1.02634 0.99591 0.92354 1.22428 0.98231 1.02686 0.95498 0.85397 1.19445 0.89240 0.76761 0.81442 1.90618 1.32522 1.54943 1.65564 1.47860 1.08622 1.64217 1.11136 1.22664 0.84116 1.01414 0.95568 1.21159 0.91046 0.94834 0.89682 1.43967 0.99375 1.77769 1.09984 1.19085 1.11481 1.22387 0.86293 0.91597 1.24973 1.01271 0.95471 0.97281 1.70149 1.25950 1.17889 1.39377 0.86494 0.78168 0.80627 0.82333 1.20955 1.21648 1.20752 1.21290 0.90475 0.96393 0.91295 1.22164 0.85967 0.99488 0.94975 0.91670 0.91777 0.91558 0.86101 0.86128 0.86402 0.86331 0.86123 0.87768 0.87538 0.91968 0.91091 0.95772 0.89469 0.93491 0.95944 0.91570 0.90200 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.55 37.16 0.36 -0.69 16 2 C -0.07 -0.82 2.40 -155.66 -0.37 -1.19 16 3 C -0.05 -0.63 4.24 -104.62 -0.44 -1.08 16 4 C -0.10 -1.31 9.44 -39.58 -0.37 -1.68 16 5 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 6 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 7 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 8 C -0.10 -1.36 9.31 -39.58 -0.37 -1.73 16 9 C -0.14 -1.65 8.95 -26.69 -0.24 -1.89 16 10 C -0.17 -2.33 4.15 -91.73 -0.38 -2.71 16 11 H 0.13 1.65 7.64 -51.93 -0.40 1.25 16 12 C 0.54 9.70 6.43 -10.99 -0.07 9.63 16 13 O -0.56 -11.45 15.88 5.55 0.09 -11.36 16 14 N -0.59 -10.78 2.94 -172.24 -0.51 -11.29 16 15 C 0.09 1.55 6.54 -3.37 -0.02 1.52 16 16 C 0.16 3.57 5.61 -3.36 -0.02 3.55 16 17 N -0.59 -14.32 2.96 -171.79 -0.51 -14.82 16 18 C -0.26 -7.01 9.50 -15.06 -0.14 -7.16 16 19 H 0.07 1.74 7.95 -52.49 -0.42 1.32 16 20 C 0.01 0.27 4.64 -17.43 -0.08 0.19 16 21 N -0.89 -25.05 11.84 55.49 0.66 -24.39 16 22 Si 0.89 20.91 29.63 -169.99 -5.04 15.87 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.83 6.67 -3.62 -0.02 2.80 16 27 C 0.10 1.87 6.59 -3.62 -0.02 1.85 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.12 1.48 8.05 -52.48 -0.42 1.05 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.46 6.37 -52.48 -0.33 1.12 16 36 H 0.10 0.96 8.05 -51.93 -0.42 0.55 16 37 H 0.11 1.37 6.20 -51.93 -0.32 1.05 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.08 6.01 -51.93 -0.31 0.77 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 2.13 6.31 -51.93 -0.33 1.80 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 45 H 0.08 1.52 6.99 -51.93 -0.36 1.15 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -31.10 369.39 -10.21 -41.31 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.07 Total: 3.26 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.40 Total: -4.14 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.36 Total: -50.50 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.04 Total: 15.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.10 -10.21 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900777874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.686 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds