Wall clock time and date at job start Tue Mar 31 2020 11:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 115.54970 * 2 1 4 4 C 1.38238 * 120.00316 * 53.08938 * 3 2 1 5 5 C 1.38230 * 120.00728 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99652 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.38231 * 120.00266 * 233.07160 * 3 2 1 9 9 C 1.52999 * 117.49858 * 214.33180 * 2 1 3 10 10 C 1.52997 * 117.49946 * 145.66547 * 2 1 3 11 11 H 1.09003 * 117.49740 * 0.03153 * 10 2 1 12 12 C 1.50699 * 117.49903 * 215.00160 * 10 2 1 13 13 O 1.21286 * 119.99878 * 270.61953 * 12 10 2 14 14 N 1.34775 * 119.99679 * 90.62447 * 12 10 2 15 15 C 1.46957 * 120.59407 * 359.72103 * 14 12 10 16 16 C 1.53815 * 108.40280 * 124.75921 * 15 14 12 17 17 N 1.46966 * 108.57842 * 49.62977 * 16 15 14 18 18 C 1.36937 * 120.59196 * 124.62431 * 17 16 15 19 19 H 1.08002 * 120.00318 * 208.52773 * 18 17 16 20 20 C 1.38812 * 119.99691 * 28.53487 * 18 17 16 21 21 N 1.31614 * 120.00349 * 26.26129 * 20 18 17 22 22 Si 1.86801 * 119.99899 * 206.25965 * 20 18 17 23 23 H 1.48500 * 109.47219 * 59.99802 * 22 20 18 24 24 H 1.48507 * 109.47345 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47080 * 300.00086 * 22 20 18 26 26 C 1.46966 * 118.81320 * 304.65474 * 17 16 15 27 27 C 1.46966 * 120.58986 * 179.97438 * 14 12 10 28 28 H 1.09001 * 109.47341 * 34.41526 * 1 2 3 29 29 H 1.08997 * 109.46862 * 154.41963 * 1 2 3 30 30 H 1.09007 * 109.47201 * 274.41579 * 1 2 3 31 31 H 1.08006 * 119.99402 * 359.97438 * 4 3 2 32 32 H 1.07991 * 120.00605 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.00402 * 179.72606 * 6 5 4 34 34 H 1.07996 * 120.00550 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.99889 * 359.97438 * 8 3 2 36 36 H 1.08992 * 117.49840 * 359.97200 * 9 2 1 37 37 H 1.09005 * 117.49702 * 144.99979 * 9 2 1 38 38 H 1.09004 * 109.61048 * 244.53765 * 15 14 12 39 39 H 1.08995 * 109.61149 * 5.04869 * 15 14 12 40 40 H 1.08999 * 109.73898 * 289.84689 * 16 15 14 41 41 H 1.08999 * 109.53732 * 169.29798 * 16 15 14 42 42 H 0.96998 * 120.00341 * 180.02562 * 21 20 18 43 43 H 1.08991 * 109.60711 * 295.47662 * 26 17 16 44 44 H 1.09001 * 109.60376 * 174.97037 * 26 17 16 45 45 H 1.08999 * 109.61510 * 354.95140 * 27 14 12 46 46 H 1.08997 * 109.60689 * 115.29086 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 1.8295 2.2934 0.9572 5 6 2.4260 3.5404 0.9576 6 6 3.3735 3.8535 0.0010 7 6 3.7249 2.9195 -0.9556 8 6 3.1270 1.6731 -0.9569 9 6 2.2365 -1.1207 -0.7654 10 6 2.2365 -1.1206 0.7654 11 1 1.6112 -1.8582 1.2686 12 6 3.5290 -0.7803 1.4615 13 8 4.5827 -0.8883 0.8706 14 7 3.5140 -0.3562 2.7407 15 6 2.2444 -0.2150 3.4671 16 6 2.3288 -1.0461 4.7587 17 7 3.5815 -0.7108 5.4501 18 6 3.5663 -0.2789 6.7495 19 1 4.3441 0.3784 7.1093 20 6 2.5512 -0.6861 7.6043 21 7 1.9268 -1.8245 7.3893 22 14 2.0715 0.3818 9.0600 23 1 1.6188 1.7093 8.5722 24 1 0.9693 -0.2712 9.8111 25 1 3.2446 0.5565 9.9536 26 6 4.8508 -0.8467 4.7219 27 6 4.7668 -0.0214 3.4324 28 1 -0.3634 0.8478 -0.5808 29 1 -0.3633 -0.9269 -0.4437 30 1 -0.3634 0.0791 1.0247 31 1 1.0894 2.0485 1.7048 32 1 2.1524 4.2696 1.7056 33 1 3.8364 4.8292 -0.0015 34 1 4.4649 3.1642 -1.7032 35 1 3.4014 0.9433 -1.7044 36 1 1.6113 -1.8582 -1.2685 37 1 3.1714 -0.8746 -1.2689 38 1 2.0788 0.8337 3.7140 39 1 1.4258 -0.5812 2.8475 40 1 2.3189 -2.1083 4.5143 41 1 1.4812 -0.8081 5.4013 42 1 1.2172 -2.1089 7.9864 43 1 5.0204 -1.8946 4.4750 44 1 5.6687 -0.4770 5.3404 45 1 5.6145 -0.2596 2.7898 46 1 4.7784 1.0414 3.6741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900777874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:39 Heat of formation + Delta-G solvation = 29.919911 kcal Electronic energy + Delta-G solvation = -27238.146479 eV Core-core repulsion = 23707.554324 eV Total energy + Delta-G solvation = -3530.592155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67364 -40.09718 -38.61842 -37.61025 -35.55819 -33.24247 -31.98355 -31.90478 -31.47395 -29.56229 -28.69389 -26.07628 -24.95678 -24.06979 -24.03471 -23.20193 -21.82252 -20.59571 -19.93323 -18.94081 -17.88230 -17.55588 -16.97444 -16.59520 -16.43871 -15.82544 -15.66433 -15.55787 -15.38919 -15.21451 -14.93803 -14.84200 -14.29347 -14.14203 -13.93352 -13.74640 -13.48250 -13.36469 -13.27195 -12.98710 -12.69741 -12.60557 -12.51903 -12.28244 -12.07778 -12.02277 -11.94593 -11.87894 -11.67159 -11.28884 -11.03741 -10.69147 -10.55753 -9.80499 -9.78810 -9.53808 -8.68877 -7.92386 -5.34453 0.42949 0.52837 1.48524 1.51346 1.58031 1.58651 2.02947 2.51777 2.65798 2.97242 3.19736 3.43200 3.57335 3.66499 3.77911 3.91376 4.04609 4.15943 4.19994 4.22977 4.28056 4.30571 4.35909 4.52912 4.57063 4.63732 4.68968 4.73482 4.78562 4.79704 4.87127 4.96446 4.97179 5.03260 5.09311 5.16460 5.17093 5.19620 5.35484 5.45366 5.59690 5.61326 5.63888 5.66391 5.71344 6.13146 6.32587 6.52860 7.08300 7.21752 7.76919 8.32945 9.12798 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.004201 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.911019 B = 6663.349743 C = 6954.127579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.062 4.062 4 C -0.114 4.114 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.122 4.122 9 C -0.131 4.131 10 C -0.188 4.188 11 H 0.141 0.859 12 C 0.542 3.458 13 O -0.588 6.588 14 N -0.593 5.593 15 C 0.107 3.893 16 C 0.166 3.834 17 N -0.604 5.604 18 C -0.276 4.276 19 H 0.065 0.935 20 C -0.035 4.035 21 N -0.923 5.923 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.134 3.866 27 C 0.109 3.891 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.001 0.999 41 H 0.065 0.935 42 H 0.253 0.747 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 7.804 -17.411 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.056 4.056 3 C -0.062 4.062 4 C -0.132 4.132 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.168 4.168 10 C -0.209 4.209 11 H 0.159 0.841 12 C 0.332 3.668 13 O -0.469 6.469 14 N -0.323 5.323 15 C -0.017 4.017 16 C 0.039 3.961 17 N -0.328 5.328 18 C -0.405 4.405 19 H 0.083 0.917 20 C -0.232 4.232 21 N -0.567 5.567 22 Si 0.787 3.213 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.008 3.992 27 C -0.015 4.015 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.019 0.981 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.860 7.668 -17.586 19.569 hybrid contribution 0.079 0.021 1.310 1.312 sum -3.781 7.689 -16.276 18.394 Atomic orbital electron populations 1.21413 0.88486 1.03672 1.03133 1.20359 0.95956 0.86881 1.02388 1.19152 0.97097 0.94015 0.95965 1.21103 1.00452 0.93599 0.98054 1.21389 0.97181 0.97023 0.99190 1.21424 0.97795 1.00297 0.95127 1.21379 1.00111 0.93692 0.99675 1.21225 0.96501 0.97206 0.99078 1.23335 1.02575 1.00202 0.90699 1.22439 0.96914 1.04774 0.96729 0.84109 1.20100 0.90359 0.75439 0.80936 1.90595 1.34176 1.56056 1.66104 1.47925 1.08286 1.64494 1.11617 1.22412 0.84910 1.00687 0.93688 1.21033 0.89623 0.94256 0.91177 1.44224 1.00807 1.77867 1.09859 1.19368 1.11596 1.22137 0.87415 0.91750 1.25670 1.01322 0.96301 0.99889 1.70264 1.26518 1.19324 1.40627 0.85479 0.77545 0.78991 0.79268 1.20175 1.21948 1.20412 1.21321 0.89677 0.95942 0.92295 1.21919 0.86756 0.99106 0.93713 0.91055 0.89959 0.91251 0.85657 0.84766 0.84297 0.84609 0.85897 0.84791 0.88939 0.91600 0.87985 0.98063 0.91645 0.93793 0.97513 0.91151 0.90178 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.55 71.98 0.69 -1.02 16 2 C -0.06 -1.18 2.40 -52.93 -0.13 -1.30 16 3 C -0.06 -1.52 4.24 -19.87 -0.08 -1.61 16 4 C -0.11 -2.76 9.44 22.27 0.21 -2.55 16 5 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 6 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 7 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 8 C -0.12 -3.03 9.31 22.27 0.21 -2.82 16 9 C -0.13 -2.79 8.95 30.62 0.27 -2.51 16 10 C -0.19 -4.87 4.15 -11.51 -0.05 -4.92 16 11 H 0.14 3.28 7.64 -2.39 -0.02 3.26 16 12 C 0.54 18.87 6.43 87.66 0.56 19.43 16 13 O -0.59 -24.01 15.88 -3.05 -0.05 -24.06 16 14 N -0.59 -21.34 2.94 -817.24 -2.40 -23.75 16 15 C 0.11 3.70 6.54 86.57 0.57 4.27 16 16 C 0.17 7.47 5.61 86.57 0.49 7.96 16 17 N -0.60 -29.71 2.96 -697.42 -2.06 -31.77 16 18 C -0.28 -14.75 9.50 84.03 0.80 -13.95 16 19 H 0.06 3.40 7.95 -2.91 -0.02 3.37 16 20 C -0.03 -1.85 4.64 84.86 0.39 -1.46 16 21 N -0.92 -52.60 11.84 21.65 0.26 -52.35 16 22 Si 0.96 42.99 29.63 68.60 2.03 45.03 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.13 5.80 6.67 86.40 0.58 6.37 16 27 C 0.11 4.15 6.59 86.40 0.57 4.72 16 28 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 29 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.13 2.83 8.05 -2.91 -0.02 2.80 16 32 H 0.13 2.59 8.06 -2.92 -0.02 2.56 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.12 2.88 6.37 -2.91 -0.02 2.86 16 36 H 0.13 2.02 8.05 -2.39 -0.02 2.00 16 37 H 0.09 2.27 6.20 -2.38 -0.01 2.25 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.10 2.90 6.01 -2.39 -0.01 2.88 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 3.23 6.31 -2.39 -0.02 3.22 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.07 2.92 7.93 -2.39 -0.02 2.90 16 45 H 0.08 3.04 6.99 -2.39 -0.02 3.03 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.00 369.39 4.48 -62.52 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.96 Total: 21.82 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.74 Total: 2.56 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.21 Total: -107.86 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.00 4.48 -62.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900777874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.440 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds