Wall clock time and date at job start Tue Mar 31 2020 11:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34176 * 126.24057 * 2 1 4 4 C 1.30334 * 108.90425 * 180.23390 * 3 2 1 5 5 O 1.34050 * 109.03472 * 359.77472 * 4 3 2 6 6 C 1.35116 * 107.71001 * 359.97438 * 5 4 3 7 7 C 1.47811 * 126.57808 * 179.97438 * 6 5 4 8 8 C 1.39611 * 120.07404 * 313.32554 * 7 6 5 9 9 C 1.37813 * 119.93207 * 180.02562 * 8 7 6 10 10 C 1.39031 * 120.06805 * 359.97438 * 9 8 7 11 11 N 1.39616 * 119.92948 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.00321 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47519 * 179.72335 * 12 11 10 14 14 C 1.53000 * 109.46937 * 299.99692 * 13 12 11 15 15 C 1.53001 * 109.46996 * 59.99600 * 13 12 11 16 16 C 1.52995 * 109.47118 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47110 * 179.97438 * 16 13 12 18 18 H 1.07997 * 119.99972 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00184 * 180.02562 * 17 16 13 20 20 N 1.31518 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00238 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46943 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47445 * 119.99717 * 21 19 17 24 24 H 1.48505 * 109.46941 * 239.99655 * 21 19 17 25 25 C 1.39031 * 120.14234 * 0.28047 * 10 9 8 26 26 C 1.37820 * 120.06499 * 359.44377 * 25 10 9 27 27 H 1.08998 * 109.46716 * 264.94427 * 1 2 3 28 28 H 1.08997 * 109.47424 * 24.94836 * 1 2 3 29 29 H 1.09008 * 109.47179 * 144.95068 * 1 2 3 30 30 H 1.08003 * 125.48320 * 179.74920 * 4 3 2 31 31 H 1.07998 * 120.03276 * 0.04532 * 8 7 6 32 32 H 1.08004 * 119.96838 * 179.97438 * 9 8 7 33 33 H 0.97001 * 120.00419 * 359.72371 * 11 10 9 34 34 H 1.09004 * 109.46573 * 299.72060 * 12 11 10 35 35 H 1.09001 * 109.46687 * 59.71982 * 12 11 10 36 36 H 1.09002 * 109.47252 * 60.00308 * 14 13 12 37 37 H 1.09007 * 109.46856 * 179.97438 * 14 13 12 38 38 H 1.08991 * 109.47355 * 299.99653 * 14 13 12 39 39 H 1.08997 * 109.46996 * 60.00093 * 15 13 12 40 40 H 1.09007 * 109.47254 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.47447 * 299.99847 * 15 13 12 42 42 H 1.08997 * 109.47188 * 300.00099 * 16 13 12 43 43 H 1.09004 * 109.47142 * 59.99971 * 16 13 12 44 44 H 0.96999 * 120.00018 * 180.02562 * 20 19 17 45 45 H 1.07997 * 119.96820 * 179.70633 * 25 10 9 46 46 H 1.08001 * 120.03008 * 180.27443 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3002 1.0822 0.0000 4 6 3.5443 0.6938 -0.0050 5 8 3.5841 -0.6461 -0.0034 6 6 2.3097 -1.0951 0.0035 7 6 1.8734 -2.5073 0.0070 8 6 2.4545 -3.4213 -0.8740 9 6 2.0451 -4.7372 -0.8686 10 6 1.0548 -5.1550 0.0134 11 7 0.6426 -6.4889 0.0167 12 6 -0.4011 -6.9308 0.9451 13 6 -0.6677 -8.4233 0.7398 14 6 -1.1288 -8.6659 -0.6988 15 6 0.6167 -9.2118 1.0035 16 6 -1.7572 -8.8849 1.7097 17 6 -2.0203 -10.3549 1.5071 18 1 -1.4656 -10.9049 0.7614 19 6 -2.9692 -10.9975 2.2736 20 7 -3.6444 -10.3277 3.1820 21 14 -3.2948 -12.8197 2.0230 22 1 -2.4097 -13.3375 0.9488 23 1 -3.0199 -13.5501 3.2864 24 1 -4.7139 -13.0200 1.6341 25 6 0.4705 -4.2462 0.8883 26 6 0.8795 -2.9301 0.8917 27 1 -0.3633 -0.0906 1.0237 28 1 -0.3634 0.9317 -0.4334 29 1 -0.3634 -0.8414 -0.5902 30 1 4.4048 1.3465 -0.0101 31 1 3.2242 -3.0975 -1.5588 32 1 2.4939 -5.4447 -1.5502 33 1 1.0442 -7.1223 -0.5985 34 1 -0.0726 -6.7580 1.9699 35 1 -1.3160 -6.3690 0.7571 36 1 -0.3522 -8.3372 -1.3895 37 1 -1.3183 -9.7293 -0.8451 38 1 -2.0437 -8.1042 -0.8867 39 1 0.9451 -9.0390 2.0284 40 1 0.4269 -10.2752 0.8569 41 1 1.3932 -8.8831 0.3128 42 1 -1.4284 -8.7121 2.7344 43 1 -2.6723 -8.3231 1.5222 44 1 -4.3117 -10.7798 3.7216 45 1 -0.3018 -4.5728 1.5689 46 1 0.4283 -2.2256 1.5747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922627056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:15 Heat of formation + Delta-G solvation = 27.162154 kcal Electronic energy + Delta-G solvation = -25050.988759 eV Core-core repulsion = 21520.277019 eV Total energy + Delta-G solvation = -3530.711740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.37525 -39.54438 -37.58837 -35.32301 -34.63756 -32.54945 -31.73935 -30.98107 -29.31414 -27.32869 -26.83182 -26.57250 -25.80272 -23.39967 -22.84192 -22.48405 -21.37900 -20.69972 -18.35131 -17.68381 -17.12623 -16.74346 -16.41619 -15.94648 -15.46670 -14.77176 -14.64391 -14.49381 -14.17434 -13.80507 -13.55408 -13.35321 -13.22138 -13.14817 -12.97652 -12.86427 -12.41978 -12.25498 -12.13059 -11.93851 -11.32637 -11.17863 -11.09293 -11.08406 -10.88404 -10.75203 -10.70109 -10.45017 -10.29424 -10.19988 -9.84451 -9.28160 -9.03397 -8.99195 -8.79077 -8.42417 -7.23691 -6.06568 -4.07703 0.89915 1.40109 1.74072 2.52333 2.67479 3.25884 3.34336 3.36501 3.58286 3.81988 3.99148 4.40199 4.61711 4.71869 4.82863 4.91920 5.27863 5.29274 5.30958 5.35378 5.45419 5.48713 5.50703 5.58034 5.62178 5.68351 5.77502 5.85277 5.96204 6.06171 6.09112 6.16440 6.19909 6.28302 6.29886 6.35421 6.49327 6.56792 6.57284 6.74323 6.96811 7.00159 7.03509 7.40844 7.55204 7.56673 7.67256 7.81978 7.91953 8.34039 8.97077 9.55949 11.04896 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.002186 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.473163 B =12804.319232 C =13272.991719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.015 4.015 3 N -0.483 5.483 4 C 0.157 3.843 5 O -0.201 6.201 6 C 0.023 3.977 7 C -0.105 4.105 8 C -0.040 4.040 9 C -0.206 4.206 10 C 0.244 3.756 11 N -0.730 5.730 12 C 0.128 3.872 13 C -0.071 4.071 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.200 4.200 26 C -0.034 4.034 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.247 0.753 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.400 0.600 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.260 0.740 45 H 0.131 0.869 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.319 17.127 -7.452 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 N -0.212 5.212 4 C -0.069 4.069 5 O -0.088 6.088 6 C -0.030 4.030 7 C -0.108 4.108 8 C -0.059 4.059 9 C -0.229 4.229 10 C 0.136 3.864 11 N -0.356 5.356 12 C 0.004 3.996 13 C -0.071 4.071 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.223 4.223 26 C -0.053 4.053 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.263 0.737 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.237 0.763 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.149 0.851 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.863 17.604 -7.169 22.406 hybrid contribution 0.309 -1.767 -0.229 1.808 sum 12.172 15.837 -7.399 21.301 Atomic orbital electron populations 1.20128 0.86404 1.03387 1.02778 1.21734 0.97845 0.87060 1.06876 1.70206 1.01449 1.31896 1.17689 1.27921 0.97438 0.79370 1.02158 1.84532 1.30266 1.24315 1.69664 1.21324 0.80478 0.94867 1.06349 1.17168 1.02998 0.87358 1.03264 1.20846 0.96907 0.91999 0.96122 1.20470 1.02241 0.96421 1.03723 1.18096 0.91101 0.85082 0.92138 1.45194 1.42346 1.06342 1.41706 1.21692 0.89328 0.96478 0.92087 1.20864 0.97841 0.90748 0.97645 1.21754 0.99202 1.02728 0.94738 1.21756 0.95316 1.01437 0.99924 1.19100 0.91705 0.96318 0.93047 1.21208 1.20161 0.94233 1.19317 0.92228 1.25014 0.96162 0.98013 0.95343 1.69966 1.24838 1.35941 1.22651 0.86588 0.78051 0.85693 0.77971 1.19803 1.21099 1.21098 1.20612 1.05244 0.92737 1.03690 1.20809 0.94093 0.95152 0.95270 0.90811 0.90812 0.90422 0.73704 0.86212 0.85911 0.76345 0.92278 0.92248 0.95201 0.91476 0.93380 0.93395 0.91475 0.95201 0.96388 0.96378 0.93064 0.85122 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 9.20 36.01 0.33 -0.33 16 2 C -0.01 -0.18 7.12 -82.45 -0.59 -0.76 16 3 N -0.48 -5.76 11.27 -10.88 -0.12 -5.89 16 4 C 0.16 1.45 13.22 52.13 0.69 2.14 16 5 O -0.20 -2.30 10.80 4.10 0.04 -2.26 16 6 C 0.02 0.27 6.78 -36.55 -0.25 0.03 16 7 C -0.10 -1.25 5.60 -104.96 -0.59 -1.84 16 8 C -0.04 -0.45 9.78 -39.22 -0.38 -0.83 16 9 C -0.21 -2.35 9.87 -39.44 -0.39 -2.74 16 10 C 0.24 3.08 6.66 -83.73 -0.56 2.53 16 11 N -0.73 -9.54 5.13 -58.58 -0.30 -9.84 16 12 C 0.13 1.95 3.80 -4.04 -0.02 1.93 16 13 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 14 C -0.13 -2.14 8.05 37.16 0.30 -1.85 16 15 C -0.13 -2.15 8.05 37.16 0.30 -1.86 16 16 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 17 C -0.51 -13.18 7.65 -34.44 -0.26 -13.44 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 21 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.20 -2.48 9.29 -39.44 -0.37 -2.84 16 26 C -0.03 -0.39 8.93 -39.22 -0.35 -0.74 16 27 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.70 7.91 -51.92 -0.41 0.29 16 30 H 0.25 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.40 4.88 6.17 -40.82 -0.25 4.63 16 34 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 35 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 36 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 37 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 41 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.13 1.59 6.71 -52.49 -0.35 1.24 16 46 H 0.12 1.23 7.49 -52.49 -0.39 0.84 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -30.15 373.34 -8.32 -38.47 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.86 Total: 2.89 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.42 Total: -19.81 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.31 Total: -40.71 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.15 -8.32 -38.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922627056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.631 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds