Wall clock time and date at job start Tue Mar 31 2020 11:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34176 * 126.24057 * 2 1 4 4 C 1.30334 * 108.90425 * 180.23390 * 3 2 1 5 5 O 1.34050 * 109.03472 * 359.77472 * 4 3 2 6 6 C 1.35116 * 107.71001 * 359.97438 * 5 4 3 7 7 C 1.47811 * 126.57808 * 179.97438 * 6 5 4 8 8 C 1.39611 * 120.07404 * 313.32554 * 7 6 5 9 9 C 1.37813 * 119.93207 * 180.02562 * 8 7 6 10 10 C 1.39031 * 120.06805 * 359.97438 * 9 8 7 11 11 N 1.39616 * 119.92948 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.00321 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47519 * 179.72335 * 12 11 10 14 14 C 1.53000 * 109.46937 * 299.99692 * 13 12 11 15 15 C 1.53001 * 109.46996 * 59.99600 * 13 12 11 16 16 C 1.52995 * 109.47118 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47110 * 179.97438 * 16 13 12 18 18 H 1.07997 * 119.99972 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00184 * 180.02562 * 17 16 13 20 20 N 1.31518 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00238 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46943 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47445 * 119.99717 * 21 19 17 24 24 H 1.48505 * 109.46941 * 239.99655 * 21 19 17 25 25 C 1.39031 * 120.14234 * 0.28047 * 10 9 8 26 26 C 1.37820 * 120.06499 * 359.44377 * 25 10 9 27 27 H 1.08998 * 109.46716 * 264.94427 * 1 2 3 28 28 H 1.08997 * 109.47424 * 24.94836 * 1 2 3 29 29 H 1.09008 * 109.47179 * 144.95068 * 1 2 3 30 30 H 1.08003 * 125.48320 * 179.74920 * 4 3 2 31 31 H 1.07998 * 120.03276 * 0.04532 * 8 7 6 32 32 H 1.08004 * 119.96838 * 179.97438 * 9 8 7 33 33 H 0.97001 * 120.00419 * 359.72371 * 11 10 9 34 34 H 1.09004 * 109.46573 * 299.72060 * 12 11 10 35 35 H 1.09001 * 109.46687 * 59.71982 * 12 11 10 36 36 H 1.09002 * 109.47252 * 60.00308 * 14 13 12 37 37 H 1.09007 * 109.46856 * 179.97438 * 14 13 12 38 38 H 1.08991 * 109.47355 * 299.99653 * 14 13 12 39 39 H 1.08997 * 109.46996 * 60.00093 * 15 13 12 40 40 H 1.09007 * 109.47254 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.47447 * 299.99847 * 15 13 12 42 42 H 1.08997 * 109.47188 * 300.00099 * 16 13 12 43 43 H 1.09004 * 109.47142 * 59.99971 * 16 13 12 44 44 H 0.96999 * 120.00018 * 180.02562 * 20 19 17 45 45 H 1.07997 * 119.96820 * 179.70633 * 25 10 9 46 46 H 1.08001 * 120.03008 * 180.27443 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3002 1.0822 0.0000 4 6 3.5443 0.6938 -0.0050 5 8 3.5841 -0.6461 -0.0034 6 6 2.3097 -1.0951 0.0035 7 6 1.8734 -2.5073 0.0070 8 6 2.4545 -3.4213 -0.8740 9 6 2.0451 -4.7372 -0.8686 10 6 1.0548 -5.1550 0.0134 11 7 0.6426 -6.4889 0.0167 12 6 -0.4011 -6.9308 0.9451 13 6 -0.6677 -8.4233 0.7398 14 6 -1.1288 -8.6659 -0.6988 15 6 0.6167 -9.2118 1.0035 16 6 -1.7572 -8.8849 1.7097 17 6 -2.0203 -10.3549 1.5071 18 1 -1.4656 -10.9049 0.7614 19 6 -2.9692 -10.9975 2.2736 20 7 -3.6444 -10.3277 3.1820 21 14 -3.2948 -12.8197 2.0230 22 1 -2.4097 -13.3375 0.9488 23 1 -3.0199 -13.5501 3.2864 24 1 -4.7139 -13.0200 1.6341 25 6 0.4705 -4.2462 0.8883 26 6 0.8795 -2.9301 0.8917 27 1 -0.3633 -0.0906 1.0237 28 1 -0.3634 0.9317 -0.4334 29 1 -0.3634 -0.8414 -0.5902 30 1 4.4048 1.3465 -0.0101 31 1 3.2242 -3.0975 -1.5588 32 1 2.4939 -5.4447 -1.5502 33 1 1.0442 -7.1223 -0.5985 34 1 -0.0726 -6.7580 1.9699 35 1 -1.3160 -6.3690 0.7571 36 1 -0.3522 -8.3372 -1.3895 37 1 -1.3183 -9.7293 -0.8451 38 1 -2.0437 -8.1042 -0.8867 39 1 0.9451 -9.0390 2.0284 40 1 0.4269 -10.2752 0.8569 41 1 1.3932 -8.8831 0.3128 42 1 -1.4284 -8.7121 2.7344 43 1 -2.6723 -8.3231 1.5222 44 1 -4.3117 -10.7798 3.7216 45 1 -0.3018 -4.5728 1.5689 46 1 0.4283 -2.2256 1.5747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922627056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:14 Heat of formation + Delta-G solvation = 9.546476 kcal Electronic energy + Delta-G solvation = -25051.752632 eV Core-core repulsion = 21520.277019 eV Total energy + Delta-G solvation = -3531.475613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.18338 -40.53434 -38.90404 -36.17937 -35.84448 -34.33819 -32.74626 -31.87756 -30.30728 -28.96510 -27.96195 -27.93691 -26.97019 -24.93776 -23.74100 -23.56688 -22.32010 -21.58706 -19.73907 -18.58124 -18.36137 -18.13056 -17.57613 -16.83315 -16.58060 -16.36922 -15.79662 -15.62175 -15.26086 -14.91916 -14.52920 -14.44753 -14.39245 -14.27843 -14.10804 -13.93045 -13.88727 -13.51316 -13.23402 -12.90797 -12.82977 -12.66999 -12.63162 -12.33822 -12.24899 -12.01083 -11.99102 -11.86828 -11.65641 -11.51084 -11.04204 -10.97439 -10.82948 -10.51524 -9.92478 -9.65756 -8.20791 -8.14673 -6.21211 0.03869 0.50715 0.88683 1.40275 1.42306 1.53031 1.71961 1.89848 2.41346 2.54074 2.91402 3.20161 3.35416 3.79923 3.91781 3.94828 4.01145 4.06968 4.11894 4.25684 4.44134 4.50608 4.62306 4.65940 4.72849 4.74964 4.76494 4.80167 4.81447 4.97362 4.97870 5.09740 5.11187 5.12482 5.15116 5.36699 5.42710 5.45613 5.47766 5.50570 5.53249 5.56441 5.61013 5.81761 5.82297 5.90859 6.28889 6.39715 6.76832 6.85351 6.94236 7.46275 8.97616 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.002186 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.473163 B =12804.319232 C =13272.991719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.024 4.024 3 N -0.518 5.518 4 C 0.176 3.824 5 O -0.211 6.211 6 C -0.001 4.001 7 C -0.106 4.106 8 C -0.044 4.044 9 C -0.200 4.200 10 C 0.230 3.770 11 N -0.727 5.727 12 C 0.144 3.856 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.954 3.046 22 H -0.260 1.260 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.210 4.210 26 C -0.036 4.036 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.294 0.706 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.407 0.593 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.064 0.936 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.259 0.741 45 H 0.126 0.874 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.282 17.596 -9.046 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.143 4.143 3 N -0.247 5.247 4 C -0.049 4.049 5 O -0.098 6.098 6 C -0.053 4.053 7 C -0.109 4.109 8 C -0.063 4.063 9 C -0.222 4.222 10 C 0.123 3.877 11 N -0.355 5.355 12 C 0.019 3.981 13 C -0.064 4.064 14 C -0.179 4.179 15 C -0.179 4.179 16 C 0.003 3.997 17 C -0.551 4.551 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.780 3.220 22 H -0.184 1.184 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.233 4.233 26 C -0.055 4.055 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.309 0.691 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.244 0.756 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.068 0.932 45 H 0.144 0.856 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.839 18.084 -8.787 24.408 hybrid contribution -0.220 -1.730 0.266 1.764 sum 13.619 16.354 -8.521 22.925 Atomic orbital electron populations 1.20186 0.85406 1.03649 1.03442 1.22092 0.98791 0.87179 1.06260 1.70239 1.02621 1.32254 1.19573 1.29058 0.98124 0.78990 0.98700 1.84532 1.30001 1.25328 1.69973 1.21350 0.80879 0.94957 1.08113 1.17321 1.02833 0.87648 1.03121 1.21057 0.97175 0.91918 0.96180 1.20661 1.01433 0.96796 1.03321 1.18207 0.91862 0.84713 0.92873 1.44889 1.42133 1.06796 1.41664 1.21288 0.89939 0.94511 0.92353 1.20662 0.96448 0.92537 0.96775 1.21678 1.00053 1.01540 0.94582 1.21682 0.95614 1.00190 1.00393 1.18974 0.92466 0.95222 0.93078 1.21621 1.19382 0.95443 1.18627 0.91428 1.25888 0.96376 1.02478 0.95351 1.70102 1.25837 1.37771 1.23980 0.85554 0.77905 0.80472 0.78059 1.18408 1.21061 1.21039 1.20689 1.05443 0.93271 1.03920 1.20910 0.94140 0.95011 0.95465 0.89893 0.90453 0.90235 0.69098 0.84776 0.83913 0.75591 0.93071 0.92900 0.91716 0.93162 0.94182 0.94268 0.93147 0.91723 0.99206 0.99137 0.93184 0.85612 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 9.20 71.24 0.66 -0.61 16 2 C -0.02 -0.54 7.12 41.63 0.30 -0.24 16 3 N -0.52 -11.55 11.27 -303.05 -3.42 -14.97 16 4 C 0.18 2.85 13.22 130.46 1.72 4.57 16 5 O -0.21 -4.44 10.80 -8.25 -0.09 -4.53 16 6 C 0.00 -0.01 6.78 24.23 0.16 0.15 16 7 C -0.11 -2.41 5.60 -20.08 -0.11 -2.52 16 8 C -0.04 -0.92 9.78 22.50 0.22 -0.70 16 9 C -0.20 -4.11 9.87 22.36 0.22 -3.89 16 10 C 0.23 5.47 6.66 38.28 0.25 5.73 16 11 N -0.73 -17.74 5.13 -339.25 -1.74 -19.48 16 12 C 0.14 4.35 3.80 86.38 0.33 4.68 16 13 C -0.06 -2.26 0.54 -52.18 -0.03 -2.28 16 14 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 15 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 16 C 0.04 1.94 4.04 29.85 0.12 2.06 16 17 C -0.51 -26.84 7.65 25.60 0.20 -26.64 16 18 H 0.07 3.37 5.68 -2.91 -0.02 3.36 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 20 N -0.94 -55.41 13.29 21.45 0.28 -55.12 16 21 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 C -0.21 -5.10 9.29 22.36 0.21 -4.89 16 26 C -0.04 -0.81 8.93 22.50 0.20 -0.61 16 27 H 0.08 1.32 7.98 -2.39 -0.02 1.30 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.38 7.91 -2.38 -0.02 1.37 16 30 H 0.29 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.41 8.73 6.17 -92.71 -0.57 8.16 16 34 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 35 H 0.05 1.67 7.92 -2.39 -0.02 1.65 16 36 H 0.06 1.65 6.86 -2.39 -0.02 1.64 16 37 H 0.05 1.80 6.62 -2.38 -0.02 1.78 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.81 6.62 -2.38 -0.02 1.79 16 41 H 0.06 1.66 6.86 -2.39 -0.02 1.64 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.13 3.10 6.71 -2.91 -0.02 3.09 16 46 H 0.13 2.60 7.49 -2.91 -0.02 2.58 16 Total: -1.00 -66.33 373.34 3.55 -62.78 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.41 Total: 17.98 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 6.07 Total: -31.74 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -4.87 Total: -89.57 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.09 Total: -4.53 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.33 3.55 -62.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922627056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.327 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds