Wall clock time and date at job start Tue Mar 31 2020 10:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38101 * 119.92483 * 2 1 4 4 C 1.38051 * 120.30568 * 180.25156 * 3 2 1 5 5 C 1.39750 * 120.13925 * 359.74239 * 4 3 2 6 6 C 1.43195 * 120.07944 * 179.97438 * 5 4 3 7 7 N 4.80401 * 137.24904 * 0.27642 * 3 1 2 8 8 C 1.39357 * 119.83984 * 0.02562 * 5 4 3 9 9 C 1.39329 * 119.70030 * 359.97438 * 8 5 4 10 10 C 1.47868 * 120.07221 * 179.97438 * 9 8 5 11 11 O 1.21547 * 120.00230 * 120.73689 * 10 9 8 12 12 N 1.34782 * 119.99908 * 300.72976 * 10 9 8 13 13 C 1.46504 * 119.99865 * 4.62143 * 12 10 9 14 14 C 1.50697 * 109.46842 * 265.92381 * 13 12 10 15 15 H 1.08000 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00185 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00515 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99728 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47396 * 89.99836 * 18 16 14 20 20 H 1.48504 * 109.47235 * 209.99846 * 18 16 14 21 21 H 1.48506 * 109.47181 * 329.99864 * 18 16 14 22 22 C 1.46491 * 120.00007 * 184.61540 * 12 10 9 23 23 C 1.53000 * 109.47317 * 270.00324 * 22 12 10 24 24 C 1.53003 * 109.47334 * 180.02562 * 23 22 12 25 25 C 1.53005 * 109.47059 * 175.00304 * 24 23 22 26 26 C 1.53001 * 109.46958 * 294.99960 * 24 23 22 27 27 H 1.08996 * 109.47315 * 265.05855 * 1 2 3 28 28 H 1.09006 * 109.46849 * 25.05389 * 1 2 3 29 29 H 1.09000 * 109.47251 * 145.04934 * 1 2 3 30 30 H 1.07997 * 119.84874 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.93062 * 179.72170 * 4 3 2 32 32 H 1.07996 * 120.15302 * 180.02562 * 8 5 4 33 33 H 1.08998 * 109.47288 * 25.92418 * 13 12 10 34 34 H 1.08998 * 109.47077 * 145.92173 * 13 12 10 35 35 H 0.96997 * 120.00221 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47179 * 150.00293 * 22 12 10 37 37 H 1.09002 * 109.47165 * 30.00526 * 22 12 10 38 38 H 1.09002 * 109.47167 * 300.00200 * 23 22 12 39 39 H 1.09007 * 109.47008 * 59.99931 * 23 22 12 40 40 H 1.08997 * 109.46877 * 54.99895 * 24 23 22 41 41 H 1.08997 * 109.47165 * 59.99743 * 25 24 23 42 42 H 1.09004 * 109.46640 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46722 * 299.99327 * 25 24 23 44 44 H 1.08999 * 109.47044 * 180.02562 * 26 24 23 45 45 H 1.09007 * 109.47345 * 300.00257 * 26 24 23 46 46 H 1.09002 * 109.46890 * 59.99812 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1969 0.0000 4 6 3.5764 1.2061 -0.0052 5 6 4.2861 0.0022 -0.0051 6 6 5.7180 0.0132 -0.0111 7 7 6.8540 0.0219 -0.0157 8 6 3.5969 -1.2090 -0.0003 9 6 2.2036 -1.2105 0.0050 10 6 1.4640 -2.4909 0.0096 11 8 0.6976 -2.7468 0.9176 12 7 1.6397 -3.3742 -0.9932 13 6 2.6369 -3.1121 -2.0339 14 6 1.9747 -2.4318 -3.2042 15 1 0.9169 -2.2158 -3.1755 16 6 2.7192 -2.0850 -4.3117 17 7 2.1412 -1.4918 -5.3332 18 14 4.5486 -2.4592 -4.3617 19 1 4.7625 -3.8067 -4.9479 20 1 5.2394 -1.4418 -5.1943 21 1 5.0985 -2.4264 -2.9826 22 6 0.8335 -4.5963 -1.0424 23 6 1.5500 -5.7111 -0.2776 24 6 0.7082 -6.9877 -0.3296 25 6 1.4799 -8.1344 0.3268 26 6 -0.6063 -6.7627 0.4203 27 1 -0.3634 -0.0885 1.0238 28 1 -0.3633 0.9310 -0.4352 29 1 -0.3634 -0.8423 -0.5887 30 1 1.6522 2.1300 -0.0004 31 1 4.1090 2.1456 -0.0097 32 1 4.1403 -2.1423 0.0002 33 1 3.4190 -2.4670 -1.6336 34 1 3.0759 -4.0543 -2.3621 35 1 2.6649 -1.2482 -6.1125 36 1 0.6950 -4.8987 -2.0804 37 1 -0.1384 -4.4091 -0.5858 38 1 2.5219 -5.8983 -0.7342 39 1 1.6884 -5.4087 0.7604 40 1 0.4954 -7.2406 -1.3682 41 1 1.6927 -7.8815 1.3654 42 1 0.8800 -9.0438 0.2901 43 1 2.4164 -8.2947 -0.2075 44 1 -1.2058 -7.6723 0.3837 45 1 -0.3934 -6.5098 1.4590 46 1 -1.1560 -5.9457 -0.0472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:03 Heat of formation + Delta-G solvation = 1.840987 kcal Electronic energy + Delta-G solvation = -26589.268643 eV Core-core repulsion = 23057.458894 eV Total energy + Delta-G solvation = -3531.809748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22565 -38.46773 -36.69445 -36.21640 -34.97494 -32.71939 -32.53712 -31.44298 -29.29844 -27.76770 -27.30111 -27.06727 -24.15393 -23.10571 -22.22622 -22.10547 -20.00126 -19.67825 -17.64407 -17.07155 -16.42930 -15.81514 -15.62559 -15.40888 -15.00842 -14.45890 -14.12907 -14.05091 -13.83370 -13.60043 -13.28413 -13.26707 -13.11462 -12.88849 -12.76778 -12.66664 -12.33791 -12.13844 -12.05650 -11.92745 -11.68305 -11.49787 -11.45991 -11.14938 -11.10112 -11.06808 -10.86204 -10.73516 -10.49749 -10.28177 -10.18314 -9.66824 -9.37622 -8.84976 -8.65937 -8.52020 -7.84981 -6.24852 -4.25327 0.89648 1.30153 2.75776 2.91965 3.14918 3.21042 3.22707 3.26310 3.64344 4.02398 4.05424 4.23894 4.82420 4.90489 4.97725 5.00992 5.04645 5.06274 5.08503 5.23018 5.44751 5.54740 5.66765 5.71175 5.75055 5.77834 5.81934 5.90611 5.92471 5.93802 5.98727 6.04156 6.16862 6.22490 6.24940 6.30362 6.31377 6.34892 6.41020 6.51097 6.56240 6.62199 6.65380 6.87696 7.21586 7.40312 7.58725 7.97611 8.34110 8.68353 8.81266 9.34896 10.87709 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.005464 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.237453 B = 5123.169104 C = 6108.757721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 C -0.126 4.126 4 C -0.054 4.054 5 C -0.048 4.048 6 C 0.265 3.735 7 N -0.430 5.430 8 C -0.031 4.031 9 C -0.101 4.101 10 C 0.563 3.437 11 O -0.554 6.554 12 N -0.580 5.580 13 C 0.197 3.803 14 C -0.535 4.535 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.888 5.888 18 Si 0.862 3.138 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.119 3.881 23 C -0.130 4.130 24 C -0.094 4.094 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.042 0.958 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 -2.003 10.522 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.004 4.004 3 C -0.144 4.144 4 C -0.075 4.075 5 C -0.052 4.052 6 C -0.050 4.050 7 N -0.105 5.105 8 C -0.052 4.052 9 C -0.104 4.104 10 C 0.350 3.650 11 O -0.434 6.434 12 N -0.309 5.309 13 C 0.076 3.924 14 C -0.573 4.573 15 H 0.097 0.903 16 C -0.122 4.122 17 N -0.526 5.526 18 Si 0.688 3.312 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.004 4.004 23 C -0.168 4.168 24 C -0.113 4.113 25 C -0.202 4.202 26 C -0.204 4.204 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.182 -2.071 10.756 11.018 hybrid contribution 0.775 -0.164 -0.581 0.982 sum -0.407 -2.235 10.175 10.426 Atomic orbital electron populations 1.20880 0.90245 1.03363 1.02947 1.20042 0.96699 0.91395 0.92228 1.20841 0.93363 0.97706 1.02473 1.21151 0.94208 0.96349 0.95752 1.15756 0.84225 0.94801 1.10388 1.25678 0.92626 0.93544 0.93175 1.81197 1.12052 1.07519 1.09755 1.21140 0.93034 0.96914 0.94099 1.19595 0.92966 0.94039 1.03801 1.18085 0.81767 0.83123 0.82031 1.90716 1.38652 1.77979 1.36094 1.47907 1.38560 1.19614 1.24785 1.20099 0.88132 0.97078 0.87110 1.21271 0.97779 1.39241 0.99009 0.90279 1.24795 0.97844 0.94332 0.95274 1.69868 1.36270 1.40216 1.06216 0.87066 0.86225 0.78874 0.78985 1.19823 1.20752 1.18916 1.21450 0.94498 0.83384 1.01026 1.22017 0.99114 0.94418 1.01269 1.21049 0.95457 0.94800 0.99997 1.21824 0.99954 0.97784 1.00666 1.21877 0.96802 1.01203 1.00565 0.90195 0.91141 0.90749 0.84575 0.84972 0.84811 0.94049 0.95194 0.92357 0.89991 0.90431 0.91979 0.91716 0.91078 0.92890 0.92988 0.92849 0.93245 0.92726 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.13 36.00 0.33 -1.35 16 2 C 0.00 -0.03 5.92 -104.14 -0.62 -0.65 16 3 C -0.13 -1.61 9.64 -39.70 -0.38 -1.99 16 4 C -0.05 -0.69 9.75 -39.09 -0.38 -1.07 16 5 C -0.05 -0.73 5.73 -106.99 -0.61 -1.34 16 6 C 0.26 4.23 15.32 -22.47 -0.34 3.89 16 7 N -0.43 -7.53 18.54 41.84 0.78 -6.75 16 8 C -0.03 -0.51 7.29 -38.76 -0.28 -0.79 16 9 C -0.10 -1.76 4.98 -105.02 -0.52 -2.29 16 10 C 0.56 10.67 5.93 -12.32 -0.07 10.60 16 11 O -0.55 -11.12 16.14 5.32 0.09 -11.03 16 12 N -0.58 -11.10 2.46 -176.17 -0.43 -11.53 16 13 C 0.20 4.17 4.04 -5.19 -0.02 4.15 16 14 C -0.53 -13.54 9.94 -34.44 -0.34 -13.89 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.27 13.96 55.43 0.77 -24.49 16 18 Si 0.86 19.98 27.47 -169.99 -4.67 15.31 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 22 C 0.12 2.00 5.15 -4.05 -0.02 1.98 16 23 C -0.13 -1.86 5.01 -26.73 -0.13 -1.99 16 24 C -0.09 -1.13 2.92 -90.62 -0.26 -1.39 16 25 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 26 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.07 1.24 7.24 -51.93 -0.38 0.86 16 30 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.13 2.12 7.26 -52.49 -0.38 1.73 16 33 H 0.04 0.87 3.26 -51.93 -0.17 0.70 16 34 H 0.03 0.63 7.53 -51.93 -0.39 0.23 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.08 1.30 5.91 -51.93 -0.31 1.00 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -29.64 383.33 -7.83 -37.46 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.04 Total: 1.89 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.09 Total: -6.63 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.12 Total: -42.78 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.64 -7.83 -37.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.304 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds