Wall clock time and date at job start Tue Mar 31 2020 10:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38101 * 119.92483 * 2 1 4 4 C 1.38051 * 120.30568 * 180.25156 * 3 2 1 5 5 C 1.39750 * 120.13925 * 359.74239 * 4 3 2 6 6 C 1.43195 * 120.07944 * 179.97438 * 5 4 3 7 7 N 4.80401 * 137.24904 * 0.27642 * 3 1 2 8 8 C 1.39357 * 119.83984 * 0.02562 * 5 4 3 9 9 C 1.39329 * 119.70030 * 359.97438 * 8 5 4 10 10 C 1.47868 * 120.07221 * 179.97438 * 9 8 5 11 11 O 1.21547 * 120.00230 * 120.73689 * 10 9 8 12 12 N 1.34782 * 119.99908 * 300.72976 * 10 9 8 13 13 C 1.46504 * 119.99865 * 4.62143 * 12 10 9 14 14 C 1.50697 * 109.46842 * 265.92381 * 13 12 10 15 15 H 1.08000 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00185 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00515 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99728 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47396 * 89.99836 * 18 16 14 20 20 H 1.48504 * 109.47235 * 209.99846 * 18 16 14 21 21 H 1.48506 * 109.47181 * 329.99864 * 18 16 14 22 22 C 1.46491 * 120.00007 * 184.61540 * 12 10 9 23 23 C 1.53000 * 109.47317 * 270.00324 * 22 12 10 24 24 C 1.53003 * 109.47334 * 180.02562 * 23 22 12 25 25 C 1.53005 * 109.47059 * 175.00304 * 24 23 22 26 26 C 1.53001 * 109.46958 * 294.99960 * 24 23 22 27 27 H 1.08996 * 109.47315 * 265.05855 * 1 2 3 28 28 H 1.09006 * 109.46849 * 25.05389 * 1 2 3 29 29 H 1.09000 * 109.47251 * 145.04934 * 1 2 3 30 30 H 1.07997 * 119.84874 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.93062 * 179.72170 * 4 3 2 32 32 H 1.07996 * 120.15302 * 180.02562 * 8 5 4 33 33 H 1.08998 * 109.47288 * 25.92418 * 13 12 10 34 34 H 1.08998 * 109.47077 * 145.92173 * 13 12 10 35 35 H 0.96997 * 120.00221 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47179 * 150.00293 * 22 12 10 37 37 H 1.09002 * 109.47165 * 30.00526 * 22 12 10 38 38 H 1.09002 * 109.47167 * 300.00200 * 23 22 12 39 39 H 1.09007 * 109.47008 * 59.99931 * 23 22 12 40 40 H 1.08997 * 109.46877 * 54.99895 * 24 23 22 41 41 H 1.08997 * 109.47165 * 59.99743 * 25 24 23 42 42 H 1.09004 * 109.46640 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46722 * 299.99327 * 25 24 23 44 44 H 1.08999 * 109.47044 * 180.02562 * 26 24 23 45 45 H 1.09007 * 109.47345 * 300.00257 * 26 24 23 46 46 H 1.09002 * 109.46890 * 59.99812 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1969 0.0000 4 6 3.5764 1.2061 -0.0052 5 6 4.2861 0.0022 -0.0051 6 6 5.7180 0.0132 -0.0111 7 7 6.8540 0.0219 -0.0157 8 6 3.5969 -1.2090 -0.0003 9 6 2.2036 -1.2105 0.0050 10 6 1.4640 -2.4909 0.0096 11 8 0.6976 -2.7468 0.9176 12 7 1.6397 -3.3742 -0.9932 13 6 2.6369 -3.1121 -2.0339 14 6 1.9747 -2.4318 -3.2042 15 1 0.9169 -2.2158 -3.1755 16 6 2.7192 -2.0850 -4.3117 17 7 2.1412 -1.4918 -5.3332 18 14 4.5486 -2.4592 -4.3617 19 1 4.7625 -3.8067 -4.9479 20 1 5.2394 -1.4418 -5.1943 21 1 5.0985 -2.4264 -2.9826 22 6 0.8335 -4.5963 -1.0424 23 6 1.5500 -5.7111 -0.2776 24 6 0.7082 -6.9877 -0.3296 25 6 1.4799 -8.1344 0.3268 26 6 -0.6063 -6.7627 0.4203 27 1 -0.3634 -0.0885 1.0238 28 1 -0.3633 0.9310 -0.4352 29 1 -0.3634 -0.8423 -0.5887 30 1 1.6522 2.1300 -0.0004 31 1 4.1090 2.1456 -0.0097 32 1 4.1403 -2.1423 0.0002 33 1 3.4190 -2.4670 -1.6336 34 1 3.0759 -4.0543 -2.3621 35 1 2.6649 -1.2482 -6.1125 36 1 0.6950 -4.8987 -2.0804 37 1 -0.1384 -4.4091 -0.5858 38 1 2.5219 -5.8983 -0.7342 39 1 1.6884 -5.4087 0.7604 40 1 0.4954 -7.2406 -1.3682 41 1 1.6927 -7.8815 1.3654 42 1 0.8800 -9.0438 0.2901 43 1 2.4164 -8.2947 -0.2075 44 1 -1.2058 -7.6723 0.3837 45 1 -0.3934 -6.5098 1.4590 46 1 -1.1560 -5.9457 -0.0472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:03 Heat of formation + Delta-G solvation = -12.296732 kcal Electronic energy + Delta-G solvation = -26589.881700 eV Core-core repulsion = 23057.458894 eV Total energy + Delta-G solvation = -3532.422806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56887 -39.76102 -37.90999 -37.48325 -36.46359 -34.49631 -33.88313 -32.63591 -30.73327 -29.31678 -28.54306 -27.99066 -25.41726 -24.70921 -23.63817 -23.30164 -21.19106 -20.82731 -19.15759 -18.96123 -17.85316 -17.16271 -16.99895 -16.61463 -16.20368 -16.06033 -15.42479 -15.30090 -15.10522 -14.79930 -14.68071 -14.47269 -14.35270 -14.29287 -14.11825 -14.00275 -13.76592 -13.62874 -13.12564 -13.12284 -12.90545 -12.75850 -12.73692 -12.55643 -12.51224 -12.35037 -12.23907 -12.01755 -11.83044 -11.59924 -11.52843 -11.41211 -10.88405 -10.74326 -9.94917 -9.71439 -9.41550 -8.30055 -6.33661 -0.28274 0.12042 1.31897 1.36619 1.41240 1.49996 1.60874 1.86432 2.25045 2.29904 2.79333 2.83498 3.05151 3.52095 3.76499 3.88943 3.95145 3.96437 4.07572 4.08712 4.33457 4.37066 4.56274 4.59624 4.63285 4.66089 4.69851 4.78490 4.79862 4.84039 4.86409 4.88213 4.96725 5.04493 5.07072 5.13675 5.14748 5.18189 5.23442 5.33255 5.44307 5.47279 5.49383 5.52472 5.69092 5.78025 6.16964 6.34945 6.56206 6.70387 7.17594 7.31776 8.85978 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.005464 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.237453 B = 5123.169104 C = 6108.757721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 C -0.116 4.116 4 C -0.040 4.040 5 C -0.055 4.055 6 C 0.282 3.718 7 N -0.458 5.458 8 C -0.043 4.043 9 C -0.132 4.132 10 C 0.562 3.438 11 O -0.571 6.571 12 N -0.587 5.587 13 C 0.206 3.794 14 C -0.526 4.526 15 H 0.038 0.962 16 C 0.033 3.967 17 N -0.935 5.935 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.246 1.246 22 C 0.117 3.883 23 C -0.119 4.119 24 C -0.092 4.092 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.177 0.823 31 H 0.170 0.830 32 H 0.133 0.867 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -1.524 11.505 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.019 4.019 3 C -0.133 4.133 4 C -0.060 4.060 5 C -0.059 4.059 6 C -0.033 4.033 7 N -0.134 5.134 8 C -0.064 4.064 9 C -0.135 4.135 10 C 0.350 3.650 11 O -0.453 6.453 12 N -0.315 5.315 13 C 0.084 3.916 14 C -0.564 4.564 15 H 0.056 0.944 16 C -0.167 4.167 17 N -0.575 5.575 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.170 1.170 22 C -0.005 4.005 23 C -0.157 4.157 24 C -0.111 4.111 25 C -0.198 4.198 26 C -0.202 4.202 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.059 0.941 30 H 0.194 0.806 31 H 0.187 0.813 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.154 -1.613 11.766 11.877 hybrid contribution 0.313 -0.254 -0.850 0.941 sum 0.159 -1.867 10.916 11.075 Atomic orbital electron populations 1.20872 0.89856 1.03259 1.03102 1.20378 0.97336 0.91862 0.92283 1.21273 0.93536 0.98091 1.00411 1.21610 0.94327 0.96912 0.93118 1.15847 0.83756 0.95268 1.11032 1.25721 0.92573 0.92685 0.92285 1.81218 1.12826 1.08447 1.10904 1.21150 0.92720 0.97659 0.94866 1.19631 0.93540 0.93896 1.06404 1.18409 0.81491 0.83560 0.81502 1.90684 1.39532 1.78433 1.36642 1.47953 1.38581 1.20560 1.24444 1.19893 0.88442 0.97086 0.86179 1.21388 0.96014 1.38658 1.00361 0.94375 1.25487 1.02002 0.94305 0.94868 1.70004 1.38040 1.42306 1.07150 0.86178 0.81119 0.78863 0.79824 1.18799 1.21219 1.16969 1.21552 0.94519 0.83553 1.00917 1.21918 0.99238 0.94595 0.99968 1.21057 0.95435 0.94105 1.00538 1.21790 1.00060 0.97587 1.00409 1.21851 0.96725 1.01663 0.99969 0.89302 0.88473 0.94138 0.80603 0.81297 0.84963 0.92987 0.94254 0.92382 0.90780 0.90958 0.91956 0.92746 0.90780 0.92913 0.91403 0.92629 0.91349 0.93217 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.18 9.13 71.23 0.65 -2.53 16 2 C -0.02 -0.51 5.92 -19.55 -0.12 -0.62 16 3 C -0.12 -2.57 9.64 22.19 0.21 -2.35 16 4 C -0.04 -0.87 9.75 22.59 0.22 -0.65 16 5 C -0.06 -1.55 5.73 -21.40 -0.12 -1.67 16 6 C 0.28 8.43 15.32 88.33 1.35 9.78 16 7 N -0.46 -15.24 18.54 19.00 0.35 -14.89 16 8 C -0.04 -1.37 7.29 22.80 0.17 -1.20 16 9 C -0.13 -4.56 4.98 -20.12 -0.10 -4.66 16 10 C 0.56 21.76 5.93 86.79 0.51 22.27 16 11 O -0.57 -23.52 16.14 -3.86 -0.06 -23.58 16 12 N -0.59 -22.95 2.46 -829.56 -2.04 -24.99 16 13 C 0.21 8.72 4.04 85.63 0.35 9.07 16 14 C -0.53 -27.17 9.94 25.60 0.25 -26.91 16 15 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 16 C 0.03 1.75 5.47 84.65 0.46 2.22 16 17 N -0.94 -54.26 13.96 21.45 0.30 -53.96 16 18 Si 0.92 40.55 27.47 68.60 1.88 42.43 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.25 -10.06 6.54 99.48 0.65 -9.41 16 22 C 0.12 4.03 5.15 86.38 0.44 4.48 16 23 C -0.12 -3.40 5.01 30.60 0.15 -3.25 16 24 C -0.09 -2.14 2.92 -10.79 -0.03 -2.17 16 25 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 26 C -0.14 -3.26 8.95 71.98 0.64 -2.62 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.10 2.11 8.05 -2.38 -0.02 2.09 16 29 H 0.04 1.39 7.24 -2.39 -0.02 1.37 16 30 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.13 4.12 7.26 -2.91 -0.02 4.10 16 33 H 0.05 2.14 3.26 -2.39 -0.01 2.14 16 34 H 0.04 1.61 7.53 -2.39 -0.02 1.59 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 37 H 0.07 2.55 5.91 -2.39 -0.01 2.53 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 46 H 0.05 1.17 6.57 -2.39 -0.02 1.15 16 Total: -1.00 -65.61 383.33 7.07 -58.54 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.92 Total: 19.36 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.72 Total: -2.91 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -1.39 Total: -93.84 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.88 Total: 42.43 kcal Total: -65.61 7.07 -58.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.243 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds