Wall clock time and date at job start Tue Mar 31 2020 11:36:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50694 * 109.47242 * 2 1
4 4 C 1.38258 * 120.00590 * 269.72956 * 3 2 1
5 5 C 1.38206 * 120.00420 * 179.74273 * 4 3 2
6 6 C 1.38263 * 120.00037 * 0.54917 * 5 4 3
7 7 C 1.38214 * 119.99690 * 359.70408 * 6 5 4
8 8 C 1.50697 * 119.99959 * 180.02562 * 7 6 5
9 9 C 1.50697 * 109.47296 * 270.01871 * 8 7 6
10 10 O 1.21286 * 119.99817 * 0.02562 * 9 8 7
11 11 N 1.34772 * 120.00379 * 179.97438 * 9 8 7
12 12 C 1.46495 * 120.00257 * 180.02562 * 11 9 8
13 13 H 1.08995 * 115.51604 * 350.58257 * 12 11 9
14 14 C 1.52999 * 117.44386 * 205.16596 * 12 11 9
15 15 H 1.09006 * 119.54189 * 5.71682 * 14 12 11
16 16 C 1.54388 * 118.12369 * 160.80895 * 14 12 11
17 17 N 1.48144 * 104.61837 * 87.19508 * 16 14 12
18 18 C 1.36935 * 127.83865 * 140.42009 * 17 16 14
19 19 H 1.07999 * 120.00205 * 340.86055 * 18 17 16
20 20 C 1.38810 * 119.99845 * 160.86709 * 18 17 16
21 21 N 1.31623 * 120.00072 * 163.43426 * 20 18 17
22 22 Si 1.86800 * 120.00113 * 343.43025 * 20 18 17
23 23 H 1.48499 * 109.47221 * 85.38946 * 22 20 18
24 24 H 1.48507 * 109.46812 * 205.38669 * 22 20 18
25 25 H 1.48496 * 109.47211 * 325.38562 * 22 20 18
26 26 C 1.48148 * 104.32327 * 320.41237 * 17 16 14
27 27 C 1.53003 * 117.44388 * 136.00243 * 12 11 9
28 28 H 1.09005 * 119.53950 * 355.87501 * 27 12 11
29 29 C 1.38213 * 119.99699 * 89.99703 * 3 2 1
30 30 H 1.09007 * 109.47157 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46928 * 59.99654 * 1 2 3
32 32 H 1.08994 * 109.47421 * 299.99749 * 1 2 3
33 33 H 1.09003 * 109.46928 * 120.00346 * 2 1 3
34 34 H 1.09001 * 109.47086 * 240.00422 * 2 1 3
35 35 H 1.08001 * 119.99405 * 359.97438 * 4 3 2
36 36 H 1.08004 * 120.00669 * 180.26910 * 5 4 3
37 37 H 1.07990 * 120.00077 * 179.72338 * 6 5 4
38 38 H 1.09001 * 109.47270 * 30.02136 * 8 7 6
39 39 H 1.09005 * 109.47169 * 150.01755 * 8 7 6
40 40 H 0.97007 * 119.99500 * 359.97438 * 11 9 8
41 41 H 1.09008 * 110.40628 * 205.97710 * 16 14 12
42 42 H 1.08999 * 110.40640 * 328.40748 * 16 14 12
43 43 H 0.96997 * 120.00597 * 180.02562 * 21 20 18
44 44 H 1.08995 * 110.40948 * 158.37058 * 26 17 16
45 45 H 1.09000 * 110.40864 * 280.69082 * 26 17 16
46 46 H 1.08000 * 120.00382 * 0.02562 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4207 0.0000
4 6 2.2681 2.0707 -1.1973
5 6 2.7238 3.3755 -1.1973
6 6 2.9547 4.0271 0.0001
7 6 2.7239 3.3757 1.1971
8 6 2.9750 4.0860 2.5022
9 6 4.3982 3.8493 2.9373
10 8 5.1362 3.1710 2.2545
11 7 4.8514 4.3923 4.0846
12 6 6.2351 4.1626 4.5072
13 1 6.7847 3.4184 3.9310
14 6 6.5416 4.2636 6.0028
15 1 5.7247 4.4059 6.7104
16 6 7.8353 3.6039 6.5267
17 7 8.8786 4.6423 6.3599
18 6 9.9038 4.9481 7.2146
19 1 9.8543 4.6411 8.2489
20 6 11.0065 5.6528 6.7518
21 7 11.8259 6.2282 7.6062
22 14 11.3277 5.7845 4.9163
23 1 10.5548 6.9235 4.3590
24 1 12.7771 6.0081 4.6823
25 1 10.9068 4.5267 4.2486
26 6 8.5612 5.2749 5.0583
27 6 7.0196 5.3650 5.0363
28 1 6.5619 6.3542 5.0212
29 6 2.2626 2.0722 1.1970
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 0.5138 0.8899
33 1 1.8933 -0.5139 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 2.0927 1.5600 -2.1326
36 1 2.9039 3.8848 -2.1325
37 1 3.3149 5.0452 0.0001
38 1 2.8079 5.1553 2.3719
39 1 2.2941 3.7019 3.2618
40 1 4.2614 4.9358 4.6301
41 1 7.7278 3.3388 7.5786
42 1 8.0789 2.7218 5.9345
43 1 12.5963 6.7209 7.2829
44 1 9.0013 6.2705 5.0022
45 1 8.9199 4.6547 4.2368
46 1 2.0830 1.5630 2.1323
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000960627876.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:36:56
Heat of formation + Delta-G solvation = 42.296544 kcal
Electronic energy + Delta-G solvation = -24946.794495 eV
Core-core repulsion = 21416.739031 eV
Total energy + Delta-G solvation = -3530.055464 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.33202 -39.48019 -38.43850 -34.79108 -34.56964 -32.91519 -32.41888 -30.82486
-29.76093 -27.91805 -27.81661 -25.61529 -24.21086 -22.65713 -21.83778 -20.96958
-20.71033 -20.08528 -19.60227 -17.17031 -16.99090 -16.77767 -16.38434 -16.05954
-15.37371 -15.08320 -14.89048 -14.23563 -14.02794 -13.89723 -13.66404 -13.58595
-13.39371 -13.13424 -12.93713 -12.51992 -12.45092 -12.29184 -12.18284 -11.99656
-11.69592 -11.54140 -11.23317 -11.11798 -11.03118 -11.00633 -10.75174 -10.22882
-10.08673 -9.94403 -9.59275 -9.35070 -8.96304 -8.83157 -8.78797 -8.56859
-7.14085 -5.94801 -3.29263 1.13734 1.22831 2.53126 2.98716 3.32388
3.48224 3.49909 3.61814 4.06492 4.35027 4.45127 4.52361 4.61199
4.74328 4.82782 4.85596 4.89890 4.98489 5.04521 5.09720 5.12276
5.17262 5.19505 5.31090 5.32438 5.39416 5.52068 5.58103 5.59041
5.68662 5.74075 5.80151 5.87449 5.92491 6.04277 6.22197 6.27653
6.36858 6.42431 6.46620 6.53001 6.58469 6.63968 6.76353 6.82529
7.44643 7.57210 8.17968 8.29832 8.75637 9.64047 10.17853 11.21294
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.026131 B = 0.002360 C = 0.002293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1071.254503 B =11861.578690 C =12207.786655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.086 4.086
3 C -0.082 4.082
4 C -0.119 4.119
5 C -0.117 4.117
6 C -0.109 4.109
7 C -0.062 4.062
8 C -0.102 4.102
9 C 0.515 3.485
10 O -0.527 6.527
11 N -0.700 5.700
12 C 0.099 3.901
13 H 0.132 0.868
14 C -0.176 4.176
15 H 0.110 0.890
16 C 0.158 3.842
17 N -0.605 5.605
18 C -0.236 4.236
19 H 0.096 0.904
20 C 0.018 3.982
21 N -0.914 5.914
22 Si 0.888 3.112
23 H -0.286 1.286
24 H -0.302 1.302
25 H -0.270 1.270
26 C 0.130 3.870
27 C -0.175 4.175
28 H 0.109 0.891
29 C -0.102 4.102
30 H 0.057 0.943
31 H 0.055 0.945
32 H 0.055 0.945
33 H 0.072 0.928
34 H 0.071 0.929
35 H 0.119 0.881
36 H 0.121 0.879
37 H 0.119 0.881
38 H 0.103 0.897
39 H 0.103 0.897
40 H 0.400 0.600
41 H 0.062 0.938
42 H 0.033 0.967
43 H 0.264 0.736
44 H 0.072 0.928
45 H 0.037 0.963
46 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.944 -6.807 -14.772 30.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.123 4.123
3 C -0.082 4.082
4 C -0.137 4.137
5 C -0.135 4.135
6 C -0.127 4.127
7 C -0.062 4.062
8 C -0.142 4.142
9 C 0.302 3.698
10 O -0.403 6.403
11 N -0.350 5.350
12 C -0.007 4.007
13 H 0.150 0.850
14 C -0.197 4.197
15 H 0.128 0.872
16 C 0.031 3.969
17 N -0.329 5.329
18 C -0.363 4.363
19 H 0.113 0.887
20 C -0.180 4.180
21 N -0.558 5.558
22 Si 0.718 3.282
23 H -0.214 1.214
24 H -0.230 1.230
25 H -0.196 1.196
26 C 0.004 3.996
27 C -0.197 4.197
28 H 0.127 0.873
29 C -0.120 4.120
30 H 0.076 0.924
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.090 0.910
34 H 0.089 0.911
35 H 0.137 0.863
36 H 0.139 0.861
37 H 0.137 0.863
38 H 0.121 0.879
39 H 0.121 0.879
40 H 0.234 0.766
41 H 0.081 0.919
42 H 0.051 0.949
43 H 0.074 0.926
44 H 0.090 0.910
45 H 0.055 0.945
46 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -25.120 -7.201 -15.136 30.199
hybrid contribution 0.005 0.669 -0.628 0.917
sum -25.115 -6.532 -15.764 30.364
Atomic orbital electron populations
1.21744 0.94756 1.01655 1.02143 1.20545 0.96085 0.92721 1.02971
1.19826 0.99194 0.96132 0.93088 1.20993 1.00339 0.94970 0.97407
1.21071 0.99552 0.94962 0.97870 1.20967 0.99637 1.00090 0.92012
1.19230 0.99040 0.94413 0.93551 1.20680 0.94497 1.02628 0.96379
1.20498 0.89358 0.79451 0.80535 1.90747 1.58091 1.38181 1.53232
1.45380 1.12527 1.53128 1.23930 1.21817 0.82524 1.00713 0.95622
0.85023 1.24289 1.00634 1.03709 0.91107 0.87188 1.21134 0.85778
0.90950 0.99019 1.45542 1.31027 1.36133 1.20202 1.18657 0.93841
1.32641 0.91117 0.88690 1.25014 0.96260 0.99135 0.97564 1.69768
1.16670 1.35851 1.33483 0.86914 0.76023 0.78302 0.86915 1.21383
1.22982 1.19552 1.21676 0.89971 0.98429 0.89546 1.24342 0.97015
0.93998 1.04311 0.87302 1.20829 0.99663 0.93867 0.97627 0.92435
0.92627 0.92557 0.90974 0.91054 0.86334 0.86105 0.86274 0.87864
0.87902 0.76610 0.91909 0.94909 0.92626 0.91031 0.94498 0.86337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16
2 C -0.09 -0.64 6.07 -27.89 -0.17 -0.81 16
3 C -0.08 -0.79 5.13 -104.63 -0.54 -1.33 16
4 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16
5 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16
6 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16
7 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16
8 C -0.10 -0.87 5.83 -29.04 -0.17 -1.03 16
9 C 0.52 6.49 7.82 -10.99 -0.09 6.41 16
10 O -0.53 -9.12 15.60 5.55 0.09 -9.03 16
11 N -0.70 -8.21 5.56 -53.81 -0.30 -8.51 16
12 C 0.10 1.53 5.98 -67.93 -0.41 1.12 16
13 H 0.13 2.33 7.40 -51.93 -0.38 1.95 16
14 C -0.18 -2.83 7.05 -89.30 -0.63 -3.46 16
15 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16
16 C 0.16 3.10 7.04 -2.41 -0.02 3.08 16
17 N -0.60 -14.73 3.19 -168.83 -0.54 -15.27 16
18 C -0.24 -6.71 10.78 -15.06 -0.16 -6.88 16
19 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16
20 C 0.02 0.54 5.49 -17.43 -0.10 0.45 16
21 N -0.91 -28.32 13.97 55.49 0.78 -27.55 16
22 Si 0.89 22.95 24.49 -169.99 -4.16 18.79 16
23 H -0.29 -7.12 6.36 56.52 0.36 -6.76 16
24 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16
25 H -0.27 -6.90 6.33 56.52 0.36 -6.54 16
26 C 0.13 2.86 4.50 -2.38 -0.01 2.85 16
27 C -0.18 -3.04 7.05 -89.27 -0.63 -3.67 16
28 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16
29 C -0.10 -1.04 9.36 -39.58 -0.37 -1.41 16
30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16
34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
36 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16
37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16
39 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16
40 H 0.40 3.37 8.83 -40.82 -0.36 3.01 16
41 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16
42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16
44 H 0.07 1.70 5.06 -51.93 -0.26 1.43 16
45 H 0.04 0.84 6.79 -51.93 -0.35 0.49 16
46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16
LS Contribution 374.43 15.07 5.64 5.64
Total: -1.00 -34.54 374.43 -10.37 -44.91
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: -7.33 Total: 1.83 kcal
Atomic # 6 Polarization: -6.27 SS G_CDS: -4.54 Total: -10.81 kcal
Atomic # 7 Polarization: -51.26 SS G_CDS: -0.06 Total: -51.32 kcal
Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal
Atomic # 14 Polarization: 22.95 SS G_CDS: -4.16 Total: 18.79 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -34.54 -10.37 -44.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000960627876.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.206 kcal
(2) G-P(sol) polarization free energy of solvation -34.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds