Wall clock time and date at job start Tue Mar 31 2020 11:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47242 * 2 1 4 4 C 1.38258 * 120.00590 * 269.72956 * 3 2 1 5 5 C 1.38206 * 120.00420 * 179.74273 * 4 3 2 6 6 C 1.38263 * 120.00037 * 0.54917 * 5 4 3 7 7 C 1.38214 * 119.99690 * 359.70408 * 6 5 4 8 8 C 1.50697 * 119.99959 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47296 * 270.01871 * 8 7 6 10 10 O 1.21286 * 119.99817 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00379 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00257 * 180.02562 * 11 9 8 13 13 H 1.08995 * 115.51604 * 350.58257 * 12 11 9 14 14 C 1.52999 * 117.44386 * 205.16596 * 12 11 9 15 15 H 1.09006 * 119.54189 * 5.71682 * 14 12 11 16 16 C 1.54388 * 118.12369 * 160.80895 * 14 12 11 17 17 N 1.48144 * 104.61837 * 87.19508 * 16 14 12 18 18 C 1.36935 * 127.83865 * 140.42009 * 17 16 14 19 19 H 1.07999 * 120.00205 * 340.86055 * 18 17 16 20 20 C 1.38810 * 119.99845 * 160.86709 * 18 17 16 21 21 N 1.31623 * 120.00072 * 163.43426 * 20 18 17 22 22 Si 1.86800 * 120.00113 * 343.43025 * 20 18 17 23 23 H 1.48499 * 109.47221 * 85.38946 * 22 20 18 24 24 H 1.48507 * 109.46812 * 205.38669 * 22 20 18 25 25 H 1.48496 * 109.47211 * 325.38562 * 22 20 18 26 26 C 1.48148 * 104.32327 * 320.41237 * 17 16 14 27 27 C 1.53003 * 117.44388 * 136.00243 * 12 11 9 28 28 H 1.09005 * 119.53950 * 355.87501 * 27 12 11 29 29 C 1.38213 * 119.99699 * 89.99703 * 3 2 1 30 30 H 1.09007 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46928 * 59.99654 * 1 2 3 32 32 H 1.08994 * 109.47421 * 299.99749 * 1 2 3 33 33 H 1.09003 * 109.46928 * 120.00346 * 2 1 3 34 34 H 1.09001 * 109.47086 * 240.00422 * 2 1 3 35 35 H 1.08001 * 119.99405 * 359.97438 * 4 3 2 36 36 H 1.08004 * 120.00669 * 180.26910 * 5 4 3 37 37 H 1.07990 * 120.00077 * 179.72338 * 6 5 4 38 38 H 1.09001 * 109.47270 * 30.02136 * 8 7 6 39 39 H 1.09005 * 109.47169 * 150.01755 * 8 7 6 40 40 H 0.97007 * 119.99500 * 359.97438 * 11 9 8 41 41 H 1.09008 * 110.40628 * 205.97710 * 16 14 12 42 42 H 1.08999 * 110.40640 * 328.40748 * 16 14 12 43 43 H 0.96997 * 120.00597 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.40948 * 158.37058 * 26 17 16 45 45 H 1.09000 * 110.40864 * 280.69082 * 26 17 16 46 46 H 1.08000 * 120.00382 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2681 2.0707 -1.1973 5 6 2.7238 3.3755 -1.1973 6 6 2.9547 4.0271 0.0001 7 6 2.7239 3.3757 1.1971 8 6 2.9750 4.0860 2.5022 9 6 4.3982 3.8493 2.9373 10 8 5.1362 3.1710 2.2545 11 7 4.8514 4.3923 4.0846 12 6 6.2351 4.1626 4.5072 13 1 6.7847 3.4184 3.9310 14 6 6.5416 4.2636 6.0028 15 1 5.7247 4.4059 6.7104 16 6 7.8353 3.6039 6.5267 17 7 8.8786 4.6423 6.3599 18 6 9.9038 4.9481 7.2146 19 1 9.8543 4.6411 8.2489 20 6 11.0065 5.6528 6.7518 21 7 11.8259 6.2282 7.6062 22 14 11.3277 5.7845 4.9163 23 1 10.5548 6.9235 4.3590 24 1 12.7771 6.0081 4.6823 25 1 10.9068 4.5267 4.2486 26 6 8.5612 5.2749 5.0583 27 6 7.0196 5.3650 5.0363 28 1 6.5619 6.3542 5.0212 29 6 2.2626 2.0722 1.1970 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0927 1.5600 -2.1326 36 1 2.9039 3.8848 -2.1325 37 1 3.3149 5.0452 0.0001 38 1 2.8079 5.1553 2.3719 39 1 2.2941 3.7019 3.2618 40 1 4.2614 4.9358 4.6301 41 1 7.7278 3.3388 7.5786 42 1 8.0789 2.7218 5.9345 43 1 12.5963 6.7209 7.2829 44 1 9.0013 6.2705 5.0022 45 1 8.9199 4.6547 4.2368 46 1 2.0830 1.5630 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960627876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:56 Heat of formation + Delta-G solvation = 42.296544 kcal Electronic energy + Delta-G solvation = -24946.794495 eV Core-core repulsion = 21416.739031 eV Total energy + Delta-G solvation = -3530.055464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33202 -39.48019 -38.43850 -34.79108 -34.56964 -32.91519 -32.41888 -30.82486 -29.76093 -27.91805 -27.81661 -25.61529 -24.21086 -22.65713 -21.83778 -20.96958 -20.71033 -20.08528 -19.60227 -17.17031 -16.99090 -16.77767 -16.38434 -16.05954 -15.37371 -15.08320 -14.89048 -14.23563 -14.02794 -13.89723 -13.66404 -13.58595 -13.39371 -13.13424 -12.93713 -12.51992 -12.45092 -12.29184 -12.18284 -11.99656 -11.69592 -11.54140 -11.23317 -11.11798 -11.03118 -11.00633 -10.75174 -10.22882 -10.08673 -9.94403 -9.59275 -9.35070 -8.96304 -8.83157 -8.78797 -8.56859 -7.14085 -5.94801 -3.29263 1.13734 1.22831 2.53126 2.98716 3.32388 3.48224 3.49909 3.61814 4.06492 4.35027 4.45127 4.52361 4.61199 4.74328 4.82782 4.85596 4.89890 4.98489 5.04521 5.09720 5.12276 5.17262 5.19505 5.31090 5.32438 5.39416 5.52068 5.58103 5.59041 5.68662 5.74075 5.80151 5.87449 5.92491 6.04277 6.22197 6.27653 6.36858 6.42431 6.46620 6.53001 6.58469 6.63968 6.76353 6.82529 7.44643 7.57210 8.17968 8.29832 8.75637 9.64047 10.17853 11.21294 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.002360 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.254503 B =11861.578690 C =12207.786655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.109 4.109 7 C -0.062 4.062 8 C -0.102 4.102 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.700 5.700 12 C 0.099 3.901 13 H 0.132 0.868 14 C -0.176 4.176 15 H 0.110 0.890 16 C 0.158 3.842 17 N -0.605 5.605 18 C -0.236 4.236 19 H 0.096 0.904 20 C 0.018 3.982 21 N -0.914 5.914 22 Si 0.888 3.112 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.130 3.870 27 C -0.175 4.175 28 H 0.109 0.891 29 C -0.102 4.102 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.400 0.600 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.944 -6.807 -14.772 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.137 4.137 5 C -0.135 4.135 6 C -0.127 4.127 7 C -0.062 4.062 8 C -0.142 4.142 9 C 0.302 3.698 10 O -0.403 6.403 11 N -0.350 5.350 12 C -0.007 4.007 13 H 0.150 0.850 14 C -0.197 4.197 15 H 0.128 0.872 16 C 0.031 3.969 17 N -0.329 5.329 18 C -0.363 4.363 19 H 0.113 0.887 20 C -0.180 4.180 21 N -0.558 5.558 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.196 1.196 26 C 0.004 3.996 27 C -0.197 4.197 28 H 0.127 0.873 29 C -0.120 4.120 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.120 -7.201 -15.136 30.199 hybrid contribution 0.005 0.669 -0.628 0.917 sum -25.115 -6.532 -15.764 30.364 Atomic orbital electron populations 1.21744 0.94756 1.01655 1.02143 1.20545 0.96085 0.92721 1.02971 1.19826 0.99194 0.96132 0.93088 1.20993 1.00339 0.94970 0.97407 1.21071 0.99552 0.94962 0.97870 1.20967 0.99637 1.00090 0.92012 1.19230 0.99040 0.94413 0.93551 1.20680 0.94497 1.02628 0.96379 1.20498 0.89358 0.79451 0.80535 1.90747 1.58091 1.38181 1.53232 1.45380 1.12527 1.53128 1.23930 1.21817 0.82524 1.00713 0.95622 0.85023 1.24289 1.00634 1.03709 0.91107 0.87188 1.21134 0.85778 0.90950 0.99019 1.45542 1.31027 1.36133 1.20202 1.18657 0.93841 1.32641 0.91117 0.88690 1.25014 0.96260 0.99135 0.97564 1.69768 1.16670 1.35851 1.33483 0.86914 0.76023 0.78302 0.86915 1.21383 1.22982 1.19552 1.21676 0.89971 0.98429 0.89546 1.24342 0.97015 0.93998 1.04311 0.87302 1.20829 0.99663 0.93867 0.97627 0.92435 0.92627 0.92557 0.90974 0.91054 0.86334 0.86105 0.86274 0.87864 0.87902 0.76610 0.91909 0.94909 0.92626 0.91031 0.94498 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.09 -0.64 6.07 -27.89 -0.17 -0.81 16 3 C -0.08 -0.79 5.13 -104.63 -0.54 -1.33 16 4 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 5 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 6 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16 7 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 8 C -0.10 -0.87 5.83 -29.04 -0.17 -1.03 16 9 C 0.52 6.49 7.82 -10.99 -0.09 6.41 16 10 O -0.53 -9.12 15.60 5.55 0.09 -9.03 16 11 N -0.70 -8.21 5.56 -53.81 -0.30 -8.51 16 12 C 0.10 1.53 5.98 -67.93 -0.41 1.12 16 13 H 0.13 2.33 7.40 -51.93 -0.38 1.95 16 14 C -0.18 -2.83 7.05 -89.30 -0.63 -3.46 16 15 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 16 C 0.16 3.10 7.04 -2.41 -0.02 3.08 16 17 N -0.60 -14.73 3.19 -168.83 -0.54 -15.27 16 18 C -0.24 -6.71 10.78 -15.06 -0.16 -6.88 16 19 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 20 C 0.02 0.54 5.49 -17.43 -0.10 0.45 16 21 N -0.91 -28.32 13.97 55.49 0.78 -27.55 16 22 Si 0.89 22.95 24.49 -169.99 -4.16 18.79 16 23 H -0.29 -7.12 6.36 56.52 0.36 -6.76 16 24 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 25 H -0.27 -6.90 6.33 56.52 0.36 -6.54 16 26 C 0.13 2.86 4.50 -2.38 -0.01 2.85 16 27 C -0.18 -3.04 7.05 -89.27 -0.63 -3.67 16 28 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 29 C -0.10 -1.04 9.36 -39.58 -0.37 -1.41 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.40 3.37 8.83 -40.82 -0.36 3.01 16 41 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.07 1.70 5.06 -51.93 -0.26 1.43 16 45 H 0.04 0.84 6.79 -51.93 -0.35 0.49 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -34.54 374.43 -10.37 -44.91 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.33 Total: 1.83 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.54 Total: -10.81 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.06 Total: -51.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.16 Total: 18.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.54 -10.37 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960627876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.206 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds