Wall clock time and date at job start Tue Mar 31 2020 11:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47242 * 2 1 4 4 C 1.38258 * 120.00590 * 269.72956 * 3 2 1 5 5 C 1.38206 * 120.00420 * 179.74273 * 4 3 2 6 6 C 1.38263 * 120.00037 * 0.54917 * 5 4 3 7 7 C 1.38214 * 119.99690 * 359.70408 * 6 5 4 8 8 C 1.50697 * 119.99959 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47296 * 270.01871 * 8 7 6 10 10 O 1.21286 * 119.99817 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00379 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00257 * 180.02562 * 11 9 8 13 13 H 1.08995 * 115.51604 * 350.58257 * 12 11 9 14 14 C 1.52999 * 117.44386 * 205.16596 * 12 11 9 15 15 H 1.09006 * 119.54189 * 5.71682 * 14 12 11 16 16 C 1.54388 * 118.12369 * 160.80895 * 14 12 11 17 17 N 1.48144 * 104.61837 * 87.19508 * 16 14 12 18 18 C 1.36935 * 127.83865 * 140.42009 * 17 16 14 19 19 H 1.07999 * 120.00205 * 340.86055 * 18 17 16 20 20 C 1.38810 * 119.99845 * 160.86709 * 18 17 16 21 21 N 1.31623 * 120.00072 * 163.43426 * 20 18 17 22 22 Si 1.86800 * 120.00113 * 343.43025 * 20 18 17 23 23 H 1.48499 * 109.47221 * 85.38946 * 22 20 18 24 24 H 1.48507 * 109.46812 * 205.38669 * 22 20 18 25 25 H 1.48496 * 109.47211 * 325.38562 * 22 20 18 26 26 C 1.48148 * 104.32327 * 320.41237 * 17 16 14 27 27 C 1.53003 * 117.44388 * 136.00243 * 12 11 9 28 28 H 1.09005 * 119.53950 * 355.87501 * 27 12 11 29 29 C 1.38213 * 119.99699 * 89.99703 * 3 2 1 30 30 H 1.09007 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46928 * 59.99654 * 1 2 3 32 32 H 1.08994 * 109.47421 * 299.99749 * 1 2 3 33 33 H 1.09003 * 109.46928 * 120.00346 * 2 1 3 34 34 H 1.09001 * 109.47086 * 240.00422 * 2 1 3 35 35 H 1.08001 * 119.99405 * 359.97438 * 4 3 2 36 36 H 1.08004 * 120.00669 * 180.26910 * 5 4 3 37 37 H 1.07990 * 120.00077 * 179.72338 * 6 5 4 38 38 H 1.09001 * 109.47270 * 30.02136 * 8 7 6 39 39 H 1.09005 * 109.47169 * 150.01755 * 8 7 6 40 40 H 0.97007 * 119.99500 * 359.97438 * 11 9 8 41 41 H 1.09008 * 110.40628 * 205.97710 * 16 14 12 42 42 H 1.08999 * 110.40640 * 328.40748 * 16 14 12 43 43 H 0.96997 * 120.00597 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.40948 * 158.37058 * 26 17 16 45 45 H 1.09000 * 110.40864 * 280.69082 * 26 17 16 46 46 H 1.08000 * 120.00382 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2681 2.0707 -1.1973 5 6 2.7238 3.3755 -1.1973 6 6 2.9547 4.0271 0.0001 7 6 2.7239 3.3757 1.1971 8 6 2.9750 4.0860 2.5022 9 6 4.3982 3.8493 2.9373 10 8 5.1362 3.1710 2.2545 11 7 4.8514 4.3923 4.0846 12 6 6.2351 4.1626 4.5072 13 1 6.7847 3.4184 3.9310 14 6 6.5416 4.2636 6.0028 15 1 5.7247 4.4059 6.7104 16 6 7.8353 3.6039 6.5267 17 7 8.8786 4.6423 6.3599 18 6 9.9038 4.9481 7.2146 19 1 9.8543 4.6411 8.2489 20 6 11.0065 5.6528 6.7518 21 7 11.8259 6.2282 7.6062 22 14 11.3277 5.7845 4.9163 23 1 10.5548 6.9235 4.3590 24 1 12.7771 6.0081 4.6823 25 1 10.9068 4.5267 4.2486 26 6 8.5612 5.2749 5.0583 27 6 7.0196 5.3650 5.0363 28 1 6.5619 6.3542 5.0212 29 6 2.2626 2.0722 1.1970 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0927 1.5600 -2.1326 36 1 2.9039 3.8848 -2.1325 37 1 3.3149 5.0452 0.0001 38 1 2.8079 5.1553 2.3719 39 1 2.2941 3.7019 3.2618 40 1 4.2614 4.9358 4.6301 41 1 7.7278 3.3388 7.5786 42 1 8.0789 2.7218 5.9345 43 1 12.5963 6.7209 7.2829 44 1 9.0013 6.2705 5.0022 45 1 8.9199 4.6547 4.2368 46 1 2.0830 1.5630 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960627876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:56 Heat of formation + Delta-G solvation = 20.716018 kcal Electronic energy + Delta-G solvation = -24947.730297 eV Core-core repulsion = 21416.739031 eV Total energy + Delta-G solvation = -3530.991266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35048 -40.51541 -39.58072 -36.19616 -35.30997 -34.44268 -33.38972 -32.51693 -30.38731 -29.45024 -28.78366 -27.39327 -24.79155 -23.83892 -22.96905 -22.22702 -21.87605 -21.18581 -20.79323 -18.97856 -18.09806 -17.90465 -17.35397 -17.02654 -16.77766 -15.96077 -15.78377 -15.59614 -15.45246 -15.09740 -14.72310 -14.59990 -14.48222 -14.29558 -14.00646 -13.80178 -13.77204 -13.44885 -13.16525 -12.99200 -12.84071 -12.67801 -12.58542 -12.43218 -12.14803 -12.11414 -11.76048 -11.69394 -11.62260 -11.54607 -11.11593 -10.93083 -10.80819 -9.75914 -9.67157 -9.48716 -9.17720 -8.20186 -5.50526 0.42636 0.52546 1.24586 1.35902 1.43253 1.56319 1.99212 2.36181 2.75480 2.88080 3.04516 3.23899 3.66434 3.70224 3.76426 3.84028 3.95778 3.97257 4.02253 4.24514 4.24953 4.30324 4.33618 4.40326 4.51351 4.58612 4.62754 4.65447 4.70796 4.71446 4.79899 4.81526 4.93382 5.03556 5.09931 5.14322 5.20849 5.22598 5.24375 5.39119 5.49593 5.55967 5.58956 5.67296 5.74427 6.07410 6.15590 6.55320 6.63807 7.26369 7.45007 8.09455 8.99663 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.002360 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.254503 B =11861.578690 C =12207.786655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.077 4.077 8 C -0.092 4.092 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.684 5.684 12 C 0.120 3.880 13 H 0.108 0.892 14 C -0.157 4.157 15 H 0.145 0.855 16 C 0.148 3.852 17 N -0.626 5.626 18 C -0.224 4.224 19 H 0.068 0.932 20 C -0.039 4.039 21 N -0.959 5.959 22 Si 0.946 3.054 23 H -0.271 1.271 24 H -0.307 1.307 25 H -0.269 1.269 26 C 0.123 3.877 27 C -0.180 4.180 28 H 0.133 0.867 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.421 0.579 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.136 -6.789 -15.944 33.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.131 4.131 9 C 0.304 3.696 10 O -0.458 6.458 11 N -0.335 5.335 12 C 0.013 3.987 13 H 0.126 0.874 14 C -0.178 4.178 15 H 0.163 0.837 16 C 0.023 3.977 17 N -0.352 5.352 18 C -0.352 4.352 19 H 0.086 0.914 20 C -0.234 4.234 21 N -0.606 5.606 22 Si 0.776 3.224 23 H -0.198 1.198 24 H -0.235 1.235 25 H -0.194 1.194 26 C -0.002 4.002 27 C -0.201 4.201 28 H 0.151 0.849 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.259 0.741 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -28.396 -7.180 -16.312 33.526 hybrid contribution 0.936 0.558 -0.258 1.120 sum -27.460 -6.621 -16.569 32.748 Atomic orbital electron populations 1.21711 0.93708 1.02386 1.02066 1.20582 0.96957 0.91607 1.03172 1.20141 0.98923 0.97084 0.93145 1.21276 1.00239 0.95163 0.98157 1.21373 0.99328 0.95301 0.98558 1.21235 1.00084 1.00793 0.92438 1.19509 0.99089 0.94730 0.94445 1.20728 0.91781 1.04390 0.96172 1.21238 0.90551 0.78072 0.79729 1.90739 1.59775 1.40484 1.54755 1.45194 1.11057 1.53153 1.24094 1.21372 0.84076 0.98574 0.94701 0.87431 1.24179 0.99697 1.01889 0.92025 0.83707 1.21327 0.86308 0.90286 0.99744 1.45668 1.31033 1.38059 1.20406 1.18613 0.94870 1.30949 0.90797 0.91399 1.25626 0.96561 0.99855 1.01317 1.69887 1.17650 1.37812 1.35255 0.85957 0.75459 0.78712 0.82298 1.19793 1.23544 1.19404 1.21645 0.93581 0.96924 0.88061 1.24163 0.93845 0.95967 1.06153 0.84936 1.21078 1.00111 0.94207 0.98260 0.91296 0.92602 0.92719 0.91092 0.90537 0.84777 0.84566 0.85413 0.85008 0.84854 0.74095 0.91431 0.94814 0.92798 0.92815 0.95356 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.78 16 2 C -0.09 -1.16 6.07 29.85 0.18 -0.98 16 3 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 5 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 6 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 7 C -0.08 -1.45 4.37 -19.86 -0.09 -1.53 16 8 C -0.09 -1.22 5.83 29.10 0.17 -1.05 16 9 C 0.52 11.49 7.82 87.66 0.69 12.17 16 10 O -0.58 -19.25 15.60 -3.05 -0.05 -19.30 16 11 N -0.68 -13.40 5.56 -442.55 -2.46 -15.87 16 12 C 0.12 3.36 5.98 44.99 0.27 3.63 16 13 H 0.11 3.66 7.40 -2.39 -0.02 3.65 16 14 C -0.16 -4.54 7.05 -9.94 -0.07 -4.61 16 15 H 0.15 3.25 8.14 -2.38 -0.02 3.23 16 16 C 0.15 5.64 7.04 86.53 0.61 6.25 16 17 N -0.63 -30.34 3.19 -688.05 -2.20 -32.54 16 18 C -0.22 -13.00 10.78 84.03 0.91 -12.09 16 19 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 20 C -0.04 -2.36 5.49 84.86 0.47 -1.90 16 21 N -0.96 -61.11 13.97 21.65 0.30 -60.81 16 22 Si 0.95 48.34 24.49 68.60 1.68 50.02 16 23 H -0.27 -13.05 6.36 99.48 0.63 -12.42 16 24 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 25 H -0.27 -13.47 6.33 99.48 0.63 -12.84 16 26 C 0.12 5.32 4.50 86.55 0.39 5.70 16 27 C -0.18 -5.75 7.05 -9.92 -0.07 -5.82 16 28 H 0.13 3.64 8.14 -2.38 -0.02 3.62 16 29 C -0.12 -2.24 9.36 22.27 0.21 -2.03 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 34 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.13 2.07 8.06 -2.92 -0.02 2.04 16 38 H 0.13 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.13 0.99 8.09 -2.38 -0.02 0.97 16 40 H 0.42 4.92 8.83 -92.70 -0.82 4.10 16 41 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.05 2.50 5.06 -2.39 -0.01 2.49 16 45 H 0.03 1.28 6.79 -2.39 -0.02 1.26 16 46 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -77.55 374.43 2.20 -75.34 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.00 Total: 14.30 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.92 Total: -11.15 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.36 Total: -109.22 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.68 Total: 50.02 kcal Total: -77.55 2.20 -75.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960627876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.061 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds