Wall clock time and date at job start Tue Mar 31 2020 10:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 119.99598 * 2 1 4 4 C 1.38237 * 119.99786 * 179.78610 * 3 2 1 5 5 C 1.38233 * 120.00187 * 0.44740 * 4 3 2 6 6 C 1.50699 * 120.00483 * 179.83035 * 5 4 3 7 7 H 1.08999 * 109.47226 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46939 * 299.97982 * 6 5 4 9 9 C 1.50704 * 109.46727 * 59.97714 * 6 5 4 10 10 O 1.21276 * 120.00171 * 359.97438 * 9 6 5 11 11 N 1.34780 * 119.99430 * 180.02562 * 9 6 5 12 12 C 1.46500 * 119.99357 * 180.02562 * 11 9 6 13 13 H 1.09001 * 115.51886 * 350.41166 * 12 11 9 14 14 C 1.53003 * 117.43886 * 204.99797 * 12 11 9 15 15 H 1.08993 * 119.53995 * 4.11241 * 14 12 11 16 16 C 1.54393 * 118.12099 * 159.21450 * 14 12 11 17 17 N 1.48143 * 104.61869 * 87.19066 * 16 14 12 18 18 C 1.36936 * 127.83846 * 140.41353 * 17 16 14 19 19 H 1.08005 * 119.99766 * 195.56960 * 18 17 16 20 20 C 1.38808 * 120.00170 * 15.57320 * 18 17 16 21 21 N 1.31616 * 119.99917 * 9.09486 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 189.10026 * 20 18 17 23 23 H 1.48499 * 109.47296 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47222 * 119.99694 * 22 20 18 25 25 H 1.48500 * 109.47379 * 239.99755 * 22 20 18 26 26 C 1.48147 * 104.32413 * 320.41406 * 17 16 14 27 27 C 1.53002 * 117.43939 * 135.75899 * 12 11 9 28 28 H 1.08997 * 119.54237 * 355.87441 * 27 12 11 29 29 C 1.38236 * 119.99592 * 359.81215 * 5 4 3 30 30 C 1.38230 * 120.00387 * 180.28158 * 2 1 3 31 31 H 1.08992 * 109.46940 * 269.72154 * 1 2 3 32 32 H 1.09002 * 109.47279 * 29.72453 * 1 2 3 33 33 H 1.09005 * 109.46937 * 149.72434 * 1 2 3 34 34 H 1.08006 * 120.00300 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.00163 * 180.27315 * 4 3 2 36 36 H 1.08997 * 109.47177 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47366 * 299.99652 * 8 6 5 38 38 H 1.08999 * 109.47536 * 59.99686 * 8 6 5 39 39 H 0.96993 * 120.00674 * 359.97438 * 11 9 6 40 40 H 1.09002 * 110.40401 * 205.97222 * 16 14 12 41 41 H 1.08996 * 110.40682 * 328.40075 * 16 14 12 42 42 H 0.97005 * 120.00411 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.41314 * 158.37216 * 26 17 16 44 44 H 1.08999 * 110.40786 * 280.68589 * 26 17 16 45 45 H 1.07999 * 119.99895 * 179.97438 * 29 5 4 46 46 H 1.08007 * 119.99929 * 359.97272 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0045 5 6 4.2718 0.0002 -0.0004 6 6 5.7787 0.0002 0.0006 7 1 6.1421 -1.0275 -0.0033 8 6 6.2895 0.7265 -1.2453 9 6 6.2802 0.7056 1.2343 10 8 5.4915 1.1636 2.0337 11 7 7.6051 0.8283 1.4487 12 6 8.0926 1.5136 2.6483 13 1 7.3341 2.0354 3.2319 14 6 9.4876 2.1387 2.5854 15 1 10.0437 2.1187 1.6482 16 6 9.8331 3.2509 3.5990 17 7 10.3361 2.5280 4.7902 18 6 11.3809 2.8753 5.6044 19 1 11.8033 2.1472 6.2811 20 6 11.8970 4.1631 5.5602 21 7 11.2753 5.0980 4.8734 22 14 13.4741 4.5692 6.4752 23 1 13.9730 3.3529 7.1657 24 1 14.4974 5.0462 5.5105 25 1 13.2054 5.6316 7.4774 26 6 9.4523 1.3442 4.9009 27 6 9.2447 0.8603 3.4144 28 1 9.6197 -0.1119 3.0947 29 6 3.5806 -1.1970 -0.0058 30 6 2.1983 -1.1971 -0.0059 31 1 -0.3633 -0.0050 1.0276 32 1 -0.3634 0.8924 -0.5096 33 1 -0.3633 -0.8875 -0.5181 34 1 1.6581 2.1325 0.0004 35 1 4.1205 2.1326 0.0089 36 1 7.3795 0.7270 -1.2444 37 1 5.9268 0.2164 -2.1376 38 1 5.9262 1.7542 -1.2414 39 1 8.2359 0.4623 0.8092 40 1 10.6067 3.9049 3.1966 41 1 8.9418 3.8255 3.8512 42 1 11.6361 5.9979 4.8422 43 1 9.9385 0.5597 5.4807 44 1 8.5023 1.6205 5.3583 45 1 4.1206 -2.1323 -0.0101 46 1 1.6583 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962319913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:08 Heat of formation + Delta-G solvation = 39.912302 kcal Electronic energy + Delta-G solvation = -25201.447153 eV Core-core repulsion = 21671.288301 eV Total energy + Delta-G solvation = -3530.158852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.42135 -39.18981 -38.12726 -34.76578 -34.47418 -32.68750 -31.36820 -30.98198 -30.08500 -27.02323 -26.89000 -25.76190 -24.36438 -22.86862 -22.03650 -20.99443 -20.45434 -19.72793 -19.29088 -17.10188 -16.84377 -16.69133 -15.93432 -15.53665 -15.15927 -14.72721 -14.62967 -14.18536 -13.89593 -13.69101 -13.57581 -13.44356 -13.27065 -12.78786 -12.73163 -12.50976 -12.32311 -12.22702 -11.88970 -11.78989 -11.48657 -11.45525 -11.11167 -11.00909 -10.97967 -10.85521 -10.34824 -10.19676 -10.13222 -9.76000 -9.67756 -9.21064 -8.96609 -8.74826 -8.60857 -8.30780 -6.87949 -5.80820 -3.15131 1.19676 1.34936 2.66040 3.12725 3.37331 3.43227 3.45786 3.70212 4.33040 4.35708 4.45498 4.55349 4.73570 4.80126 4.85605 4.94868 5.01669 5.17716 5.19683 5.32162 5.37250 5.37484 5.40303 5.44520 5.48736 5.57881 5.59652 5.63566 5.73772 5.84580 5.86629 5.95142 5.98974 6.15805 6.25373 6.30524 6.48754 6.51399 6.52146 6.68866 6.82413 6.88710 6.91328 7.34395 7.52317 7.60189 7.70797 8.19306 8.31351 9.09874 9.72586 10.49667 11.33619 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.002264 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.633031 B =12362.086261 C =12518.089142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.122 4.122 4 C -0.078 4.078 5 C -0.071 4.071 6 C -0.071 4.071 7 H 0.103 0.897 8 C -0.141 4.141 9 C 0.518 3.482 10 O -0.528 6.528 11 N -0.698 5.698 12 C 0.094 3.906 13 H 0.131 0.869 14 C -0.180 4.180 15 H 0.101 0.899 16 C 0.185 3.815 17 N -0.593 5.593 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.157 3.843 27 C -0.186 4.186 28 H 0.106 0.894 29 C -0.108 4.108 30 C -0.125 4.125 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.254 0.746 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 -12.438 -15.472 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.096 4.096 5 C -0.072 4.072 6 C -0.092 4.092 7 H 0.121 0.879 8 C -0.199 4.199 9 C 0.304 3.696 10 O -0.403 6.403 11 N -0.346 5.346 12 C -0.011 4.011 13 H 0.148 0.852 14 C -0.201 4.201 15 H 0.119 0.881 16 C 0.059 3.941 17 N -0.317 5.317 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.030 3.970 27 C -0.207 4.207 28 H 0.124 0.876 29 C -0.126 4.126 30 C -0.143 4.143 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.279 -11.886 -14.787 24.999 hybrid contribution 1.280 -0.025 0.088 1.284 sum -14.999 -11.911 -14.699 24.143 Atomic orbital electron populations 1.20784 0.91407 1.02522 1.02306 1.19909 0.95943 0.93291 0.99743 1.20996 0.94119 0.97486 1.01427 1.20913 0.93949 0.97661 0.97096 1.19267 0.93195 0.93640 1.01065 1.20294 0.93202 1.01406 0.94295 0.87901 1.21804 1.01262 1.01007 0.95791 1.20417 0.82186 0.79798 0.87232 1.90730 1.55005 1.47873 1.46726 1.45401 1.06698 1.58251 1.24283 1.21885 0.91811 0.99089 0.88356 0.85175 1.24631 0.96257 0.98440 1.00795 0.88147 1.21064 0.98108 0.90469 0.84420 1.45135 1.33800 1.23754 1.28963 1.19037 1.05797 0.94654 1.15921 0.90459 1.24909 0.99803 0.95233 1.00411 1.69906 1.39079 1.01876 1.45245 0.86032 0.82727 0.78009 0.78891 1.20354 1.21626 1.21667 1.21693 0.94000 0.90718 0.90557 1.25087 1.02060 0.96639 0.96959 0.87612 1.20961 0.94270 0.97112 1.00307 1.20914 0.93979 0.97404 1.02024 0.91216 0.91647 0.91727 0.86192 0.86209 0.91620 0.91230 0.91659 0.76857 0.89093 0.95629 0.93572 0.93173 0.95184 0.86219 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 4 C -0.08 -0.94 7.93 -39.58 -0.31 -1.25 16 5 C -0.07 -0.81 4.40 -104.63 -0.46 -1.27 16 6 C -0.07 -0.70 2.90 -92.92 -0.27 -0.97 16 7 H 0.10 0.81 7.88 -51.93 -0.41 0.40 16 8 C -0.14 -1.12 8.90 37.16 0.33 -0.79 16 9 C 0.52 7.18 7.02 -10.98 -0.08 7.10 16 10 O -0.53 -9.58 14.67 5.56 0.08 -9.50 16 11 N -0.70 -9.22 5.46 -53.80 -0.29 -9.51 16 12 C 0.09 1.60 5.92 -67.93 -0.40 1.20 16 13 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 14 C -0.18 -3.38 6.98 -89.21 -0.62 -4.00 16 15 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.19 4.48 5.70 -2.41 -0.01 4.46 16 17 N -0.59 -15.30 3.38 -166.73 -0.56 -15.86 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.09 7.85 -52.48 -0.41 1.67 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 21 N -0.91 -26.84 10.86 55.49 0.60 -26.24 16 22 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.16 3.37 7.10 -0.57 0.00 3.36 16 27 C -0.19 -3.32 7.34 -87.37 -0.64 -3.96 16 28 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 29 C -0.11 -1.10 9.67 -39.58 -0.38 -1.49 16 30 C -0.13 -1.22 9.70 -39.59 -0.38 -1.60 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.47 7.52 -52.49 -0.39 1.07 16 36 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 39 H 0.40 4.05 8.24 -40.82 -0.34 3.72 16 40 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.12 0.96 7.95 -52.49 -0.42 0.54 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -32.92 376.05 -10.91 -43.83 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.25 Total: 4.34 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -4.13 Total: -9.62 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.25 Total: -51.61 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.92 -10.91 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962319913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.744 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds