Wall clock time and date at job start Tue Mar 31 2020 10:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38233 * 119.99598 * 2 1 4 4 C 1.38237 * 119.99786 * 179.78610 * 3 2 1 5 5 C 1.38233 * 120.00187 * 0.44740 * 4 3 2 6 6 C 1.50699 * 120.00483 * 179.83035 * 5 4 3 7 7 H 1.08999 * 109.47226 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46939 * 299.97982 * 6 5 4 9 9 C 1.50704 * 109.46727 * 59.97714 * 6 5 4 10 10 O 1.21276 * 120.00171 * 359.97438 * 9 6 5 11 11 N 1.34780 * 119.99430 * 180.02562 * 9 6 5 12 12 C 1.46500 * 119.99357 * 180.02562 * 11 9 6 13 13 H 1.09001 * 115.51886 * 350.41166 * 12 11 9 14 14 C 1.53003 * 117.43886 * 204.99797 * 12 11 9 15 15 H 1.08993 * 119.53995 * 4.11241 * 14 12 11 16 16 C 1.54393 * 118.12099 * 159.21450 * 14 12 11 17 17 N 1.48143 * 104.61869 * 87.19066 * 16 14 12 18 18 C 1.36936 * 127.83846 * 140.41353 * 17 16 14 19 19 H 1.08005 * 119.99766 * 195.56960 * 18 17 16 20 20 C 1.38808 * 120.00170 * 15.57320 * 18 17 16 21 21 N 1.31616 * 119.99917 * 9.09486 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 189.10026 * 20 18 17 23 23 H 1.48499 * 109.47296 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47222 * 119.99694 * 22 20 18 25 25 H 1.48500 * 109.47379 * 239.99755 * 22 20 18 26 26 C 1.48147 * 104.32413 * 320.41406 * 17 16 14 27 27 C 1.53002 * 117.43939 * 135.75899 * 12 11 9 28 28 H 1.08997 * 119.54237 * 355.87441 * 27 12 11 29 29 C 1.38236 * 119.99592 * 359.81215 * 5 4 3 30 30 C 1.38230 * 120.00387 * 180.28158 * 2 1 3 31 31 H 1.08992 * 109.46940 * 269.72154 * 1 2 3 32 32 H 1.09002 * 109.47279 * 29.72453 * 1 2 3 33 33 H 1.09005 * 109.46937 * 149.72434 * 1 2 3 34 34 H 1.08006 * 120.00300 * 0.02562 * 3 2 1 35 35 H 1.08001 * 120.00163 * 180.27315 * 4 3 2 36 36 H 1.08997 * 109.47177 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47366 * 299.99652 * 8 6 5 38 38 H 1.08999 * 109.47536 * 59.99686 * 8 6 5 39 39 H 0.96993 * 120.00674 * 359.97438 * 11 9 6 40 40 H 1.09002 * 110.40401 * 205.97222 * 16 14 12 41 41 H 1.08996 * 110.40682 * 328.40075 * 16 14 12 42 42 H 0.97005 * 120.00411 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.41314 * 158.37216 * 26 17 16 44 44 H 1.08999 * 110.40786 * 280.68589 * 26 17 16 45 45 H 1.07999 * 119.99895 * 179.97438 * 29 5 4 46 46 H 1.08007 * 119.99929 * 359.97272 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0045 5 6 4.2718 0.0002 -0.0004 6 6 5.7787 0.0002 0.0006 7 1 6.1421 -1.0275 -0.0033 8 6 6.2895 0.7265 -1.2453 9 6 6.2802 0.7056 1.2343 10 8 5.4915 1.1636 2.0337 11 7 7.6051 0.8283 1.4487 12 6 8.0926 1.5136 2.6483 13 1 7.3341 2.0354 3.2319 14 6 9.4876 2.1387 2.5854 15 1 10.0437 2.1187 1.6482 16 6 9.8331 3.2509 3.5990 17 7 10.3361 2.5280 4.7902 18 6 11.3809 2.8753 5.6044 19 1 11.8033 2.1472 6.2811 20 6 11.8970 4.1631 5.5602 21 7 11.2753 5.0980 4.8734 22 14 13.4741 4.5692 6.4752 23 1 13.9730 3.3529 7.1657 24 1 14.4974 5.0462 5.5105 25 1 13.2054 5.6316 7.4774 26 6 9.4523 1.3442 4.9009 27 6 9.2447 0.8603 3.4144 28 1 9.6197 -0.1119 3.0947 29 6 3.5806 -1.1970 -0.0058 30 6 2.1983 -1.1971 -0.0059 31 1 -0.3633 -0.0050 1.0276 32 1 -0.3634 0.8924 -0.5096 33 1 -0.3633 -0.8875 -0.5181 34 1 1.6581 2.1325 0.0004 35 1 4.1205 2.1326 0.0089 36 1 7.3795 0.7270 -1.2444 37 1 5.9268 0.2164 -2.1376 38 1 5.9262 1.7542 -1.2414 39 1 8.2359 0.4623 0.8092 40 1 10.6067 3.9049 3.1966 41 1 8.9418 3.8255 3.8512 42 1 11.6361 5.9979 4.8422 43 1 9.9385 0.5597 5.4807 44 1 8.5023 1.6205 5.3583 45 1 4.1206 -2.1323 -0.0101 46 1 1.6583 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962319913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:07 Heat of formation + Delta-G solvation = 20.928525 kcal Electronic energy + Delta-G solvation = -25202.270351 eV Core-core repulsion = 21671.288301 eV Total energy + Delta-G solvation = -3530.982051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46707 -40.36465 -39.42375 -36.09783 -35.61093 -34.29109 -32.46062 -31.82864 -31.52233 -28.81681 -27.67494 -27.51462 -25.36519 -23.70994 -23.40554 -22.16665 -21.93321 -20.93978 -20.75646 -18.87280 -18.06974 -17.84152 -17.00950 -16.71516 -16.39820 -16.01255 -15.63992 -15.54389 -15.20531 -14.86215 -14.64718 -14.53271 -14.38875 -14.17759 -13.76902 -13.57922 -13.34588 -13.19082 -13.14570 -12.94652 -12.87228 -12.75198 -12.60005 -12.43060 -12.08505 -11.98746 -11.89927 -11.83481 -11.74989 -11.67997 -10.94159 -10.80805 -10.68489 -9.76383 -9.68689 -9.37316 -8.94837 -7.93568 -5.30828 0.41610 0.56151 1.46343 1.46975 1.55753 1.58431 1.99675 2.47306 2.85740 2.89807 3.27379 3.54401 3.60718 3.76023 3.82492 3.95144 3.99742 4.06866 4.10190 4.14502 4.22880 4.28344 4.32575 4.50818 4.57395 4.60609 4.79957 4.83093 4.83993 4.85308 4.87882 4.95268 4.96131 5.01335 5.21827 5.25709 5.26434 5.31939 5.40330 5.43995 5.52930 5.55561 5.62769 5.72362 5.74133 6.14534 6.16450 6.55030 6.98277 7.25259 7.65063 8.43663 9.20586 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.002264 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.633031 B =12362.086261 C =12518.089142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.101 4.101 5 C -0.088 4.088 6 C -0.059 4.059 7 H 0.135 0.865 8 C -0.138 4.138 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.682 5.682 12 C 0.114 3.886 13 H 0.099 0.901 14 C -0.179 4.179 15 H 0.127 0.873 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.148 3.852 27 C -0.164 4.164 28 H 0.142 0.858 29 C -0.114 4.114 30 C -0.132 4.132 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.418 0.582 40 H 0.059 0.941 41 H -0.007 1.007 42 H 0.250 0.750 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.145 0.855 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 -15.523 -16.954 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.158 4.158 4 C -0.119 4.119 5 C -0.089 4.089 6 C -0.080 4.080 7 H 0.153 0.847 8 C -0.196 4.196 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.332 5.332 12 C 0.007 3.993 13 H 0.117 0.883 14 C -0.200 4.200 15 H 0.145 0.855 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.187 1.187 24 H -0.215 1.215 25 H -0.220 1.220 26 C 0.022 3.978 27 C -0.186 4.186 28 H 0.160 0.840 29 C -0.131 4.131 30 C -0.149 4.149 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.078 0.922 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.163 0.837 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.073 -15.020 -16.304 27.382 hybrid contribution 1.085 0.941 0.585 1.551 sum -14.987 -14.079 -15.719 25.883 Atomic orbital electron populations 1.20825 0.89560 1.03689 1.02778 1.20270 0.97466 0.93052 0.98951 1.21207 0.94048 0.98541 1.02023 1.20973 0.94628 0.97712 0.98558 1.19489 0.94037 0.93766 1.01557 1.20327 0.92422 1.02626 0.92637 0.84714 1.21826 1.02292 1.00045 0.95417 1.21212 0.81633 0.78931 0.87813 1.90721 1.56199 1.49858 1.48688 1.45193 1.07165 1.57578 1.23281 1.21375 0.90244 0.98353 0.89348 0.88268 1.24307 0.98259 0.96720 1.00714 0.85496 1.20794 0.95609 0.91707 0.85588 1.45438 1.34120 1.25075 1.29464 1.19437 1.06302 0.94995 1.16101 0.89868 1.25797 1.03113 0.95172 1.01738 1.70110 1.40675 1.01981 1.46900 0.84948 0.78624 0.77896 0.77439 1.18708 1.21528 1.22032 1.21828 0.92833 0.89713 0.93433 1.25001 1.02121 0.97429 0.94007 0.83992 1.21304 0.94738 0.97606 0.99490 1.21294 0.94224 0.98262 1.01164 0.90972 0.91015 0.90096 0.85615 0.87794 0.89875 0.89409 0.93274 0.74427 0.92227 0.98946 0.94069 0.91941 0.96372 0.83712 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.10 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.14 -3.10 9.70 22.27 0.22 -2.88 16 4 C -0.10 -2.47 7.93 22.27 0.18 -2.29 16 5 C -0.09 -1.88 4.40 -19.87 -0.09 -1.97 16 6 C -0.06 -1.04 2.90 -12.29 -0.04 -1.07 16 7 H 0.14 1.53 7.88 -2.39 -0.02 1.51 16 8 C -0.14 -1.85 8.90 71.98 0.64 -1.21 16 9 C 0.52 13.63 7.02 87.66 0.62 14.25 16 10 O -0.58 -21.19 14.67 -3.02 -0.04 -21.24 16 11 N -0.68 -16.46 5.46 -442.52 -2.41 -18.87 16 12 C 0.11 3.77 5.92 44.99 0.27 4.04 16 13 H 0.10 4.01 7.40 -2.39 -0.02 4.00 16 14 C -0.18 -6.58 6.98 -9.88 -0.07 -6.65 16 15 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 16 C 0.19 9.49 5.70 86.54 0.49 9.98 16 17 N -0.62 -32.48 3.38 -681.41 -2.30 -34.79 16 18 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 19 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 20 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 21 N -0.95 -57.74 10.86 21.65 0.24 -57.51 16 22 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 C 0.15 6.31 7.10 87.73 0.62 6.94 16 27 C -0.16 -5.54 7.34 -8.69 -0.06 -5.61 16 28 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 29 C -0.11 -2.04 9.67 22.27 0.22 -1.83 16 30 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 33 H 0.08 0.77 8.09 -2.38 -0.02 0.75 16 34 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.10 2.75 7.52 -2.91 -0.02 2.73 16 36 H 0.08 0.82 7.56 -2.39 -0.02 0.80 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.82 7.39 -2.39 -0.02 0.81 16 39 H 0.42 6.86 8.24 -92.71 -0.76 6.10 16 40 H 0.06 3.34 6.51 -2.39 -0.02 3.32 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.15 1.77 7.95 -2.91 -0.02 1.75 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -75.32 376.05 2.84 -72.47 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.21 Total: 21.21 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.13 Total: -8.96 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.48 Total: -111.16 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.32 2.84 -72.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962319913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.402 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds