Wall clock time and date at job start Tue Mar 31 2020 10:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.85550 * 2 1 4 4 C 1.37953 * 120.14565 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.07167 * 179.97438 * 4 3 2 6 6 C 1.39573 * 119.85307 * 359.97438 * 4 3 2 7 7 C 1.47853 * 120.14364 * 179.97438 * 6 4 3 8 8 O 1.21545 * 119.99571 * 89.99854 * 7 6 4 9 9 N 1.34771 * 119.99709 * 270.00319 * 7 6 4 10 10 C 1.46501 * 119.99664 * 180.02562 * 9 7 6 11 11 H 1.09011 * 115.49427 * 9.61969 * 10 9 7 12 12 C 1.52995 * 117.44545 * 224.23448 * 10 9 7 13 13 H 1.08998 * 119.53852 * 4.12078 * 12 10 9 14 14 C 1.54394 * 118.12311 * 160.80696 * 12 10 9 15 15 N 1.48147 * 104.61513 * 87.19798 * 14 12 10 16 16 C 1.36936 * 127.83649 * 140.39516 * 15 14 12 17 17 H 1.08002 * 119.99632 * 195.57353 * 16 15 14 18 18 C 1.38805 * 120.00010 * 15.57852 * 16 15 14 19 19 N 1.31617 * 120.00516 * 9.09706 * 18 16 15 20 20 Si 1.86811 * 119.99879 * 189.09913 * 18 16 15 21 21 H 1.48493 * 109.47024 * 89.99886 * 20 18 16 22 22 H 1.48495 * 109.47130 * 209.99975 * 20 18 16 23 23 H 1.48505 * 109.46779 * 329.99635 * 20 18 16 24 24 C 1.48147 * 104.32323 * 320.40971 * 15 14 12 25 25 C 1.53004 * 117.44552 * 154.99545 * 10 9 7 26 26 H 1.08999 * 119.53450 * 355.88187 * 25 10 9 27 27 C 1.39574 * 119.71181 * 0.25124 * 6 4 3 28 28 C 1.50698 * 120.07362 * 179.72396 * 27 6 4 29 29 C 1.37957 * 119.85291 * 359.51718 * 27 6 4 30 30 H 1.09004 * 109.47406 * 89.99959 * 1 2 3 31 31 H 1.08999 * 109.47474 * 209.99906 * 1 2 3 32 32 H 1.09006 * 109.47006 * 330.00197 * 1 2 3 33 33 H 1.07999 * 119.92578 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47057 * 270.02445 * 5 4 3 35 35 H 1.08999 * 109.47267 * 30.02622 * 5 4 3 36 36 H 1.09001 * 109.46595 * 150.02371 * 5 4 3 37 37 H 0.96996 * 120.00512 * 359.97438 * 9 7 6 38 38 H 1.09001 * 110.40281 * 205.97602 * 14 12 10 39 39 H 1.08997 * 110.40495 * 328.40673 * 14 12 10 40 40 H 0.97000 * 120.00556 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.40805 * 280.80899 * 24 15 14 42 42 H 1.09003 * 110.40721 * 158.37289 * 24 15 14 43 43 H 1.09006 * 109.47090 * 90.00328 * 28 27 6 44 44 H 1.09003 * 109.47194 * 210.00084 * 28 27 6 45 45 H 1.08996 * 109.47471 * 330.00204 * 28 27 6 46 46 H 1.07998 * 119.93228 * 180.23104 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.3238 2.5150 -0.0001 6 6 4.2761 0.0000 0.0016 7 6 5.7547 0.0000 0.0016 8 8 6.3623 0.0009 1.0543 9 7 6.4285 -0.0010 -1.1656 10 6 7.8935 -0.0016 -1.1655 11 1 8.3626 -0.1656 -0.1953 12 6 8.5990 0.9447 -2.1389 13 1 8.0076 1.6301 -2.7459 14 6 10.0758 1.3021 -1.8649 15 7 10.8499 0.2273 -2.5286 16 6 12.0167 0.3462 -3.2353 17 1 12.3452 -0.4598 -3.8748 18 6 12.7774 1.5024 -3.1296 19 7 12.4776 2.4068 -2.2215 20 14 14.2267 1.7751 -4.2764 21 1 13.7661 2.4866 -5.4956 22 1 15.2571 2.5917 -3.5862 23 1 14.8088 0.4635 -4.6587 24 6 10.0749 -1.0053 -2.2544 25 6 8.5985 -0.5766 -2.3957 26 1 8.0065 -1.0244 -3.1939 27 6 3.5752 -1.2070 -0.0032 28 6 4.3237 -2.5149 -0.0083 29 6 2.1957 -1.2000 0.0012 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6522 2.1332 -0.0004 34 1 4.5043 2.8298 -1.0278 35 1 3.7319 3.2726 0.5134 36 1 5.2767 2.3884 0.5139 37 1 5.9435 -0.0021 -2.0056 38 1 10.3196 2.2708 -2.3011 39 1 10.2732 1.3064 -0.7930 40 1 13.0090 3.2149 -2.1479 41 1 10.2722 -1.3613 -1.2433 42 1 10.3181 -1.7773 -2.9845 43 1 4.5042 -2.8344 1.0182 44 1 3.7318 -3.2703 -0.5252 45 1 5.2767 -2.3863 -0.5216 46 1 1.6521 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962489405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:11 Heat of formation + Delta-G solvation = 34.994808 kcal Electronic energy + Delta-G solvation = -25605.609486 eV Core-core repulsion = 22075.237395 eV Total energy + Delta-G solvation = -3530.372091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60200 -39.16971 -38.02511 -34.45216 -33.84954 -33.79018 -32.51836 -30.26757 -28.21906 -27.67144 -27.14711 -26.97210 -25.57823 -22.76088 -21.30983 -21.04652 -20.45897 -19.91553 -19.28330 -17.61273 -16.86976 -16.46136 -16.33027 -15.27164 -14.74796 -14.59525 -14.43690 -14.03716 -13.81947 -13.54255 -13.43713 -13.37739 -13.26365 -13.21588 -12.86600 -12.77538 -12.72588 -12.22364 -11.96022 -11.63121 -11.57767 -11.53857 -11.42401 -11.22517 -11.00244 -10.83841 -10.41877 -10.19900 -10.17002 -9.85823 -9.73338 -9.18976 -8.83489 -8.79041 -8.74915 -8.33784 -6.87518 -5.79749 -3.14464 0.89109 1.10618 2.58332 3.09381 3.37911 3.40342 3.43450 3.45575 4.28969 4.44940 4.46705 4.47607 4.50559 4.67868 4.98525 5.01272 5.14933 5.18444 5.24705 5.27367 5.30718 5.37437 5.38829 5.42687 5.47839 5.52629 5.56286 5.62475 5.69006 5.82627 5.88045 5.89583 6.03692 6.10539 6.19199 6.23407 6.26212 6.32468 6.51375 6.67480 6.68770 6.80523 6.88152 7.36014 7.53308 7.56066 7.71461 8.20230 8.24667 9.10497 9.73248 10.50128 11.34496 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.002575 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790400 B =10872.901721 C =11322.726271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 C -0.130 4.130 4 C -0.040 4.040 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.570 3.430 8 O -0.529 6.529 9 N -0.691 5.691 10 C 0.095 3.905 11 H 0.132 0.868 12 C -0.180 4.180 13 H 0.102 0.898 14 C 0.185 3.815 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.156 3.844 25 C -0.182 4.182 26 H 0.103 0.897 27 C -0.042 4.042 28 C -0.123 4.123 29 C -0.131 4.131 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.255 0.745 41 H 0.027 0.973 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.732 -4.998 2.584 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.040 4.040 5 C -0.182 4.182 6 C -0.135 4.135 7 C 0.356 3.644 8 O -0.406 6.406 9 N -0.339 5.339 10 C -0.011 4.011 11 H 0.150 0.850 12 C -0.201 4.201 13 H 0.120 0.880 14 C 0.059 3.941 15 N -0.316 5.316 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.029 3.971 25 C -0.204 4.204 26 H 0.121 0.879 27 C -0.042 4.042 28 C -0.179 4.179 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.026 -4.842 3.304 24.731 hybrid contribution 0.359 0.232 -1.081 1.163 sum -23.667 -4.610 2.223 24.215 Atomic orbital electron populations 1.20826 0.90964 1.02945 1.02495 1.20019 0.96149 0.92981 0.97483 1.20817 0.92980 0.97803 1.03240 1.19891 0.93640 0.94138 0.96376 1.20923 1.00642 0.93566 1.03035 1.19677 0.92778 0.93693 1.07356 1.18183 0.86669 0.75603 0.83971 1.90814 1.69451 1.49080 1.31207 1.45454 1.06373 1.73839 1.08196 1.21883 0.78133 1.04142 0.96901 0.85046 1.24731 1.00388 0.92729 1.02269 0.88030 1.21055 0.82424 0.94864 0.95746 1.45182 1.24113 1.00744 1.61591 1.18991 0.96132 1.02310 1.18130 0.90506 1.24909 0.98610 0.98210 0.98548 1.69897 1.41400 1.10604 1.34149 0.86103 0.81744 0.77810 0.79997 1.21516 1.21636 1.20525 1.21110 0.87038 0.90862 0.98045 1.24325 0.98740 0.98533 0.98760 0.87888 1.19868 0.93649 0.94067 0.96648 1.20899 1.00200 0.93639 1.03182 1.20799 0.92956 0.97779 1.03353 0.90927 0.91392 0.91374 0.85569 0.90442 0.90889 0.90782 0.76659 0.89091 0.95566 0.93505 0.95484 0.92946 0.90404 0.90941 0.91128 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.00 0.36 -0.31 16 2 C -0.07 -0.58 5.89 -104.53 -0.62 -1.19 16 3 C -0.13 -1.23 9.34 -39.64 -0.37 -1.60 16 4 C -0.04 -0.45 5.91 -104.23 -0.62 -1.07 16 5 C -0.13 -1.34 9.62 36.01 0.35 -0.99 16 6 C -0.13 -1.68 5.63 -104.97 -0.59 -2.27 16 7 C 0.57 8.65 4.19 -12.33 -0.05 8.60 16 8 O -0.53 -10.19 16.67 5.33 0.09 -10.10 16 9 N -0.69 -9.68 5.56 -54.75 -0.30 -9.99 16 10 C 0.10 1.62 5.98 -67.93 -0.41 1.21 16 11 H 0.13 2.55 7.40 -51.92 -0.38 2.16 16 12 C -0.18 -3.42 7.06 -89.22 -0.63 -4.05 16 13 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 14 C 0.19 4.49 5.70 -2.41 -0.01 4.48 16 15 N -0.59 -15.22 3.38 -168.86 -0.57 -15.79 16 16 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 17 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 19 N -0.91 -26.89 10.86 55.49 0.60 -26.29 16 20 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.16 3.28 7.04 -2.41 -0.02 3.26 16 25 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 26 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 27 C -0.04 -0.46 5.91 -104.23 -0.62 -1.08 16 28 C -0.12 -1.22 9.62 36.00 0.35 -0.87 16 29 C -0.13 -1.21 9.34 -39.64 -0.37 -1.58 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 37 H 0.40 4.64 8.81 -40.82 -0.36 4.28 16 38 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.07 0.78 7.08 -51.93 -0.37 0.42 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -32.48 378.01 -10.91 -43.39 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.27 Total: 4.23 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -4.12 Total: -8.04 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.27 Total: -52.07 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -10.91 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962489405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.382 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds