Wall clock time and date at job start Tue Mar 31 2020 10:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.85550 * 2 1 4 4 C 1.37953 * 120.14565 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.07167 * 179.97438 * 4 3 2 6 6 C 1.39573 * 119.85307 * 359.97438 * 4 3 2 7 7 C 1.47853 * 120.14364 * 179.97438 * 6 4 3 8 8 O 1.21545 * 119.99571 * 89.99854 * 7 6 4 9 9 N 1.34771 * 119.99709 * 270.00319 * 7 6 4 10 10 C 1.46501 * 119.99664 * 180.02562 * 9 7 6 11 11 H 1.09011 * 115.49427 * 9.61969 * 10 9 7 12 12 C 1.52995 * 117.44545 * 224.23448 * 10 9 7 13 13 H 1.08998 * 119.53852 * 4.12078 * 12 10 9 14 14 C 1.54394 * 118.12311 * 160.80696 * 12 10 9 15 15 N 1.48147 * 104.61513 * 87.19798 * 14 12 10 16 16 C 1.36936 * 127.83649 * 140.39516 * 15 14 12 17 17 H 1.08002 * 119.99632 * 195.57353 * 16 15 14 18 18 C 1.38805 * 120.00010 * 15.57852 * 16 15 14 19 19 N 1.31617 * 120.00516 * 9.09706 * 18 16 15 20 20 Si 1.86811 * 119.99879 * 189.09913 * 18 16 15 21 21 H 1.48493 * 109.47024 * 89.99886 * 20 18 16 22 22 H 1.48495 * 109.47130 * 209.99975 * 20 18 16 23 23 H 1.48505 * 109.46779 * 329.99635 * 20 18 16 24 24 C 1.48147 * 104.32323 * 320.40971 * 15 14 12 25 25 C 1.53004 * 117.44552 * 154.99545 * 10 9 7 26 26 H 1.08999 * 119.53450 * 355.88187 * 25 10 9 27 27 C 1.39574 * 119.71181 * 0.25124 * 6 4 3 28 28 C 1.50698 * 120.07362 * 179.72396 * 27 6 4 29 29 C 1.37957 * 119.85291 * 359.51718 * 27 6 4 30 30 H 1.09004 * 109.47406 * 89.99959 * 1 2 3 31 31 H 1.08999 * 109.47474 * 209.99906 * 1 2 3 32 32 H 1.09006 * 109.47006 * 330.00197 * 1 2 3 33 33 H 1.07999 * 119.92578 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47057 * 270.02445 * 5 4 3 35 35 H 1.08999 * 109.47267 * 30.02622 * 5 4 3 36 36 H 1.09001 * 109.46595 * 150.02371 * 5 4 3 37 37 H 0.96996 * 120.00512 * 359.97438 * 9 7 6 38 38 H 1.09001 * 110.40281 * 205.97602 * 14 12 10 39 39 H 1.08997 * 110.40495 * 328.40673 * 14 12 10 40 40 H 0.97000 * 120.00556 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.40805 * 280.80899 * 24 15 14 42 42 H 1.09003 * 110.40721 * 158.37289 * 24 15 14 43 43 H 1.09006 * 109.47090 * 90.00328 * 28 27 6 44 44 H 1.09003 * 109.47194 * 210.00084 * 28 27 6 45 45 H 1.08996 * 109.47471 * 330.00204 * 28 27 6 46 46 H 1.07998 * 119.93228 * 180.23104 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0005 5 6 4.3238 2.5150 -0.0001 6 6 4.2761 0.0000 0.0016 7 6 5.7547 0.0000 0.0016 8 8 6.3623 0.0009 1.0543 9 7 6.4285 -0.0010 -1.1656 10 6 7.8935 -0.0016 -1.1655 11 1 8.3626 -0.1656 -0.1953 12 6 8.5990 0.9447 -2.1389 13 1 8.0076 1.6301 -2.7459 14 6 10.0758 1.3021 -1.8649 15 7 10.8499 0.2273 -2.5286 16 6 12.0167 0.3462 -3.2353 17 1 12.3452 -0.4598 -3.8748 18 6 12.7774 1.5024 -3.1296 19 7 12.4776 2.4068 -2.2215 20 14 14.2267 1.7751 -4.2764 21 1 13.7661 2.4866 -5.4956 22 1 15.2571 2.5917 -3.5862 23 1 14.8088 0.4635 -4.6587 24 6 10.0749 -1.0053 -2.2544 25 6 8.5985 -0.5766 -2.3957 26 1 8.0065 -1.0244 -3.1939 27 6 3.5752 -1.2070 -0.0032 28 6 4.3237 -2.5149 -0.0083 29 6 2.1957 -1.2000 0.0012 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6522 2.1332 -0.0004 34 1 4.5043 2.8298 -1.0278 35 1 3.7319 3.2726 0.5134 36 1 5.2767 2.3884 0.5139 37 1 5.9435 -0.0021 -2.0056 38 1 10.3196 2.2708 -2.3011 39 1 10.2732 1.3064 -0.7930 40 1 13.0090 3.2149 -2.1479 41 1 10.2722 -1.3613 -1.2433 42 1 10.3181 -1.7773 -2.9845 43 1 4.5042 -2.8344 1.0182 44 1 3.7318 -3.2703 -0.5252 45 1 5.2767 -2.3863 -0.5216 46 1 1.6521 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962489405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:10 Heat of formation + Delta-G solvation = 16.078105 kcal Electronic energy + Delta-G solvation = -25606.429775 eV Core-core repulsion = 22075.237395 eV Total energy + Delta-G solvation = -3531.192381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66296 -40.48413 -39.32549 -36.11460 -34.71162 -34.62206 -34.08976 -32.09040 -28.96653 -28.92268 -28.57676 -27.70739 -27.42340 -24.10522 -22.70302 -22.00435 -21.81596 -21.04025 -20.86757 -18.90680 -18.64664 -17.77986 -17.30093 -16.77606 -16.31546 -15.60114 -15.37320 -15.23111 -15.13475 -14.95772 -14.67346 -14.53007 -14.17488 -14.00530 -13.96901 -13.81036 -13.61828 -13.38426 -13.32219 -13.20731 -12.93053 -12.72283 -12.64387 -12.41532 -12.19113 -12.17071 -12.04857 -11.95774 -11.90350 -11.69582 -11.12537 -10.83814 -10.74117 -9.79616 -9.58265 -9.56867 -8.94774 -7.92761 -5.30398 0.09726 0.35769 1.37198 1.46319 1.48521 1.57571 1.90153 2.47552 2.61327 2.79599 3.27049 3.51298 3.62065 3.75280 3.76157 3.81318 3.88075 3.88860 4.10501 4.31838 4.34323 4.37321 4.45816 4.47606 4.58086 4.63560 4.66365 4.67816 4.76544 4.79471 4.86129 4.90102 4.95104 4.96821 5.06273 5.24730 5.26186 5.28963 5.37200 5.42144 5.43264 5.48600 5.49474 5.61230 5.61873 5.98377 6.14618 6.38785 6.98170 7.07191 7.65526 8.43837 9.21207 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.002575 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.790400 B =10872.901721 C =11322.726271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.052 4.052 5 C -0.123 4.123 6 C -0.158 4.158 7 C 0.576 3.424 8 O -0.578 6.578 9 N -0.675 5.675 10 C 0.115 3.885 11 H 0.105 0.895 12 C -0.184 4.184 13 H 0.122 0.878 14 C 0.190 3.810 15 N -0.616 5.616 16 C -0.240 4.240 17 H 0.085 0.915 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.983 3.017 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.149 3.851 25 C -0.156 4.156 26 H 0.141 0.859 27 C -0.051 4.051 28 C -0.122 4.122 29 C -0.131 4.131 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.416 0.584 38 H 0.058 0.942 39 H -0.007 1.007 40 H 0.250 0.750 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.963 -6.197 0.958 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.150 4.150 4 C -0.053 4.053 5 C -0.179 4.179 6 C -0.161 4.161 7 C 0.364 3.636 8 O -0.458 6.458 9 N -0.323 5.323 10 C 0.008 3.992 11 H 0.123 0.877 12 C -0.205 4.205 13 H 0.140 0.860 14 C 0.064 3.936 15 N -0.341 5.341 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.811 3.189 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.190 1.190 24 C 0.023 3.977 25 C -0.177 4.177 26 H 0.158 0.842 27 C -0.052 4.052 28 C -0.178 4.178 29 C -0.149 4.149 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.167 0.833 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.076 0.924 39 H 0.011 0.989 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.303 -6.076 1.646 28.020 hybrid contribution 1.284 0.564 -0.495 1.487 sum -26.019 -5.512 1.151 26.622 Atomic orbital electron populations 1.20901 0.88527 1.04065 1.03609 1.20439 0.97897 0.92427 0.95401 1.21099 0.92109 0.99317 1.02491 1.20029 0.94681 0.93602 0.96977 1.20908 0.99373 0.94274 1.03390 1.19567 0.90789 0.95242 1.10505 1.18641 0.87881 0.73900 0.83145 1.90785 1.70777 1.51269 1.32953 1.45250 1.04810 1.73272 1.09005 1.21414 0.79824 1.02570 0.95429 0.87741 1.24401 0.97761 0.94197 1.04169 0.86033 1.20754 0.85910 0.93546 0.93390 1.45487 1.24355 1.02701 1.61508 1.19418 0.96890 1.02491 1.18081 0.89692 1.25806 1.01649 0.98138 1.00244 1.70110 1.42627 1.10964 1.36035 0.85010 0.78156 0.77985 0.77754 1.20994 1.22252 1.19005 1.21267 0.88623 0.89779 0.98029 1.24236 0.97120 0.96712 0.99613 0.84157 1.20055 0.94655 0.93640 0.96816 1.20916 0.99874 0.94095 1.02946 1.21118 0.92163 0.99257 1.02364 0.89634 0.90240 0.90402 0.83302 0.89589 0.88942 0.94009 0.74704 0.92351 0.98881 0.94104 0.96254 0.91322 0.91061 0.88232 0.92705 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 71.23 0.71 -0.14 16 2 C -0.06 -0.87 5.89 -19.81 -0.12 -0.98 16 3 C -0.13 -2.14 9.34 22.23 0.21 -1.94 16 4 C -0.05 -1.13 5.91 -19.61 -0.12 -1.24 16 5 C -0.12 -2.57 9.62 71.24 0.69 -1.89 16 6 C -0.16 -3.93 5.63 -20.09 -0.11 -4.05 16 7 C 0.58 17.78 4.19 86.79 0.36 18.15 16 8 O -0.58 -23.36 16.67 -3.86 -0.06 -23.43 16 9 N -0.67 -18.60 5.56 -445.40 -2.48 -21.07 16 10 C 0.11 3.93 5.98 44.99 0.27 4.19 16 11 H 0.10 4.26 7.40 -2.38 -0.02 4.25 16 12 C -0.18 -7.04 7.06 -9.89 -0.07 -7.11 16 13 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 14 C 0.19 9.70 5.70 86.54 0.49 10.19 16 15 N -0.62 -32.39 3.38 -688.14 -2.33 -34.72 16 16 C -0.24 -13.56 10.35 84.03 0.87 -12.69 16 17 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 18 C -0.06 -3.72 5.40 84.86 0.46 -3.26 16 19 N -0.95 -58.20 10.86 21.65 0.24 -57.97 16 20 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.15 6.22 7.04 86.53 0.61 6.83 16 25 C -0.16 -5.28 7.06 -9.89 -0.07 -5.35 16 26 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 27 C -0.05 -1.05 5.91 -19.61 -0.12 -1.16 16 28 C -0.12 -2.25 9.62 71.24 0.69 -1.57 16 29 C -0.13 -2.02 9.34 22.23 0.21 -1.82 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.46 16 31 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.08 0.46 8.08 -2.38 -0.02 0.44 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 36 H 0.04 1.14 7.08 -2.39 -0.02 1.12 16 37 H 0.42 8.90 8.81 -92.71 -0.82 8.09 16 38 H 0.06 3.33 6.51 -2.39 -0.02 3.32 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 44 H 0.10 1.24 8.09 -2.39 -0.02 1.22 16 45 H 0.05 1.17 7.08 -2.39 -0.02 1.15 16 46 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -74.46 378.01 2.52 -71.93 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.16 Total: 21.32 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.96 Total: -3.83 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.57 Total: -113.76 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.46 2.52 -71.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962489405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.011 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds