Wall clock time and date at job start Tue Mar 31 2020 10:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00033 * 2 1 4 4 C 1.38210 * 120.00007 * 180.21118 * 3 2 1 5 5 C 1.38255 * 120.00066 * 359.85285 * 4 3 2 6 6 C 1.38209 * 120.00076 * 359.95417 * 5 4 3 7 7 C 1.38216 * 119.99970 * 179.80760 * 2 1 3 8 8 C 1.50691 * 120.00159 * 0.02562 * 7 2 1 9 9 H 1.09002 * 109.47455 * 353.90765 * 8 7 2 10 10 C 1.53001 * 109.47257 * 233.90886 * 8 7 2 11 11 C 1.50702 * 109.47564 * 113.90857 * 8 7 2 12 12 O 1.21288 * 119.99328 * 359.97438 * 11 8 7 13 13 N 1.34776 * 120.00433 * 180.27417 * 11 8 7 14 14 C 1.46496 * 120.00037 * 179.72356 * 13 11 8 15 15 H 1.08997 * 115.51772 * 9.58549 * 14 13 11 16 16 C 1.53002 * 117.44370 * 224.24248 * 14 13 11 17 17 H 1.09001 * 119.53734 * 4.12151 * 16 14 13 18 18 C 1.57692 * 116.11439 * 161.64031 * 16 14 13 19 19 N 1.48139 * 104.67517 * 87.30536 * 18 16 14 20 20 C 1.36940 * 127.83838 * 139.77770 * 19 18 16 21 21 H 1.07999 * 119.99544 * 344.69662 * 20 19 18 22 22 C 1.38810 * 119.99907 * 164.70264 * 20 19 18 23 23 N 1.31618 * 120.00337 * 350.74429 * 22 20 19 24 24 Si 1.86798 * 120.00025 * 170.75134 * 22 20 19 25 25 H 1.48503 * 109.47130 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47740 * 119.99384 * 24 22 20 27 27 H 1.48501 * 109.47314 * 239.99871 * 24 22 20 28 28 C 1.48146 * 104.32456 * 319.77710 * 19 18 16 29 29 C 1.53002 * 117.44234 * 155.00097 * 14 13 11 30 30 H 1.08995 * 119.53653 * 355.88488 * 29 14 13 31 31 H 1.09002 * 109.47310 * 264.40967 * 1 2 3 32 32 H 1.08997 * 109.47174 * 24.40682 * 1 2 3 33 33 H 1.09000 * 109.47029 * 144.40868 * 1 2 3 34 34 H 1.08008 * 119.99820 * 0.03645 * 3 2 1 35 35 H 1.08002 * 119.99909 * 179.82629 * 4 3 2 36 36 H 1.08006 * 120.00088 * 179.97438 * 5 4 3 37 37 H 1.08005 * 120.00312 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47371 * 179.97438 * 10 8 7 39 39 H 1.08996 * 109.47159 * 300.00158 * 10 8 7 40 40 H 1.09000 * 109.47339 * 60.00034 * 10 8 7 41 41 H 0.96996 * 119.99700 * 359.72721 * 13 11 8 42 42 H 1.09004 * 110.91755 * 328.23140 * 18 16 14 43 43 H 1.09000 * 109.94021 * 205.89239 * 18 16 14 44 44 H 0.96997 * 120.00501 * 180.02562 * 23 22 20 45 45 H 1.09004 * 110.40862 * 280.79756 * 28 19 18 46 46 H 1.09002 * 110.40688 * 158.36905 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0044 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0017 7 6 2.1980 -1.1970 0.0040 8 6 1.4446 -2.5020 0.0078 9 1 0.3779 -2.3055 0.1159 10 6 1.9251 -3.3649 1.1764 11 6 1.6926 -3.2291 -1.2887 12 8 2.4102 -2.7357 -2.1329 13 7 1.1122 -4.4247 -1.5126 14 6 1.3485 -5.1286 -2.7754 15 1 2.1263 -4.7051 -3.4107 16 6 0.1387 -5.7586 -3.4686 17 1 -0.8571 -5.6121 -3.0501 18 6 0.3169 -6.1054 -4.9966 19 7 0.8996 -7.4674 -5.0068 20 6 0.5995 -8.5032 -5.8508 21 1 -0.2973 -8.4676 -6.4515 22 6 1.4477 -9.5988 -5.9339 23 7 2.6249 -9.5658 -5.3462 24 14 0.9186 -11.1199 -6.8802 25 1 -0.4388 -10.9055 -7.4431 26 1 1.8782 -11.3747 -7.9845 27 1 0.8954 -12.2891 -5.9650 28 6 1.8807 -7.4546 -3.8968 29 6 1.1895 -6.6504 -2.7749 30 1 0.9764 -7.1681 -1.8397 31 1 -0.3634 -0.1001 1.0228 32 1 -0.3633 0.9358 -0.4246 33 1 -0.3633 -0.8357 -0.5981 34 1 1.6582 2.1327 0.0006 35 1 4.1203 2.1327 -0.0072 36 1 5.3517 0.0000 -0.0096 37 1 4.1206 -2.1323 -0.0032 38 1 1.3798 -4.3087 1.1794 39 1 2.9917 -3.5615 1.0684 40 1 1.7457 -2.8391 2.1142 41 1 0.5380 -4.8190 -0.8376 42 1 0.9925 -5.3994 -5.4796 43 1 -0.6530 -6.1032 -5.4939 44 1 3.2179 -10.3312 -5.4046 45 1 2.8005 -6.9594 -4.2082 46 1 2.0897 -8.4709 -3.5626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962723453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:12 Heat of formation + Delta-G solvation = 43.292285 kcal Electronic energy + Delta-G solvation = -25539.627903 eV Core-core repulsion = 22009.615618 eV Total energy + Delta-G solvation = -3530.012285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52528 -39.19603 -38.07516 -34.52631 -34.37610 -32.85719 -32.49088 -30.35838 -29.46168 -27.02867 -27.00448 -25.79478 -24.92260 -22.72776 -21.70349 -21.00204 -20.45213 -19.65519 -19.28868 -17.10404 -16.94125 -16.74821 -16.10788 -15.68874 -15.03831 -14.69342 -14.58637 -14.27662 -13.85458 -13.76756 -13.53192 -13.27010 -13.21348 -12.75495 -12.69789 -12.57499 -12.33127 -12.22666 -12.01783 -11.84097 -11.49344 -11.45612 -11.04447 -10.98853 -10.87589 -10.85492 -10.34880 -10.19632 -10.13212 -9.75891 -9.68129 -9.21501 -8.86752 -8.74820 -8.68940 -8.30812 -6.88117 -5.80717 -3.14919 1.21471 1.32185 2.66218 3.13390 3.37383 3.43280 3.45825 3.70352 4.32790 4.34338 4.45534 4.54847 4.74568 4.76510 4.89985 4.96754 5.03526 5.11376 5.17857 5.32151 5.36318 5.38991 5.40139 5.40835 5.50069 5.57858 5.61444 5.64218 5.73874 5.83900 5.86356 5.94429 6.00165 6.15809 6.25405 6.36714 6.42610 6.51531 6.52233 6.68735 6.82379 6.88618 6.91030 7.34451 7.52372 7.60169 7.70867 8.19321 8.31642 9.09912 9.72669 10.49613 11.33669 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.002424 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.936780 B =11548.154605 C =11709.226407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.063 4.063 8 C -0.076 4.076 9 H 0.107 0.893 10 C -0.141 4.141 11 C 0.518 3.482 12 O -0.528 6.528 13 N -0.698 5.698 14 C 0.094 3.906 15 H 0.131 0.869 16 C -0.186 4.186 17 H 0.106 0.894 18 C 0.158 3.842 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.185 3.815 29 C -0.180 4.180 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.030 0.970 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.026 0.974 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 18.388 16.675 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.102 4.102 7 C -0.064 4.064 8 C -0.098 4.098 9 H 0.125 0.875 10 C -0.199 4.199 11 C 0.304 3.696 12 O -0.403 6.403 13 N -0.347 5.347 14 C -0.011 4.011 15 H 0.148 0.852 16 C -0.208 4.208 17 H 0.124 0.876 18 C 0.030 3.970 19 N -0.316 5.316 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.561 5.561 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.059 3.941 29 C -0.201 4.201 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.231 0.769 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.258 18.492 15.933 24.514 hybrid contribution -0.531 -1.027 -0.074 1.158 sum -2.789 17.465 15.859 23.756 Atomic orbital electron populations 1.20855 0.91467 1.02977 1.02199 1.19708 0.95831 0.92599 0.99795 1.20940 0.94285 0.97133 1.01861 1.21099 0.94300 0.97954 1.00222 1.21089 0.99835 0.92456 1.01083 1.20917 0.93482 0.98168 0.97613 1.19111 0.93577 0.92606 1.01059 1.20392 1.01948 0.93409 0.94006 0.87475 1.21805 1.02385 0.99038 0.96658 1.20419 0.79905 0.80870 0.88428 1.90734 1.37108 1.66121 1.46313 1.45401 1.50203 1.20287 1.18771 1.21883 1.00451 0.92059 0.86752 0.85186 1.25088 0.93718 1.04275 0.97676 0.87617 1.21691 0.97094 0.88151 0.90021 1.45133 1.44963 1.07244 1.34283 1.19039 1.04129 0.95134 1.17121 0.90453 1.24902 0.95434 0.99531 1.00467 1.69904 1.07986 1.30237 1.47979 0.86035 0.77785 0.82811 0.79043 1.20361 1.21661 1.21627 1.21071 0.90045 0.98909 0.84074 1.24626 1.03751 0.90471 1.01241 0.88153 0.91085 0.91433 0.91338 0.86243 0.86295 0.86186 0.86256 0.91605 0.91632 0.91243 0.76881 0.95214 0.93155 0.93573 0.95644 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.13 36.00 0.33 -0.61 16 2 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.22 9.68 -39.58 -0.38 -1.60 16 4 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 5 C -0.13 -1.36 10.05 -39.59 -0.40 -1.75 16 6 C -0.08 -1.00 8.24 -39.58 -0.33 -1.32 16 7 C -0.06 -0.72 4.31 -104.63 -0.45 -1.17 16 8 C -0.08 -0.77 2.63 -92.93 -0.24 -1.02 16 9 H 0.11 0.88 5.73 -51.93 -0.30 0.58 16 10 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 11 C 0.52 7.22 7.05 -10.99 -0.08 7.14 16 12 O -0.53 -9.66 14.97 5.55 0.08 -9.57 16 13 N -0.70 -9.23 5.46 -53.81 -0.29 -9.52 16 14 C 0.09 1.60 5.92 -67.93 -0.40 1.20 16 15 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 16 C -0.19 -3.31 7.34 -87.38 -0.64 -3.95 16 17 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 18 C 0.16 3.36 7.10 -0.57 0.00 3.36 16 19 N -0.59 -15.26 3.38 -166.74 -0.56 -15.83 16 20 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 21 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 22 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 23 N -0.91 -26.81 10.86 55.49 0.60 -26.21 16 24 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 C 0.19 4.46 5.70 -2.41 -0.01 4.45 16 29 C -0.18 -3.37 6.98 -89.22 -0.62 -3.99 16 30 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 33 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.41 7.24 -52.48 -0.38 1.03 16 38 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 39 H 0.06 0.58 7.09 -51.93 -0.37 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.40 4.05 8.25 -40.82 -0.34 3.71 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.09 2.44 6.50 -51.93 -0.34 2.10 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -33.02 371.91 -10.79 -43.81 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.03 Total: 4.65 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.17 Total: -9.81 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.26 Total: -51.56 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.02 -10.79 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962723453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds