Wall clock time and date at job start Tue Mar 31 2020 10:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00033 * 2 1 4 4 C 1.38210 * 120.00007 * 180.21118 * 3 2 1 5 5 C 1.38255 * 120.00066 * 359.85285 * 4 3 2 6 6 C 1.38209 * 120.00076 * 359.95417 * 5 4 3 7 7 C 1.38216 * 119.99970 * 179.80760 * 2 1 3 8 8 C 1.50691 * 120.00159 * 0.02562 * 7 2 1 9 9 H 1.09002 * 109.47455 * 353.90765 * 8 7 2 10 10 C 1.53001 * 109.47257 * 233.90886 * 8 7 2 11 11 C 1.50702 * 109.47564 * 113.90857 * 8 7 2 12 12 O 1.21288 * 119.99328 * 359.97438 * 11 8 7 13 13 N 1.34776 * 120.00433 * 180.27417 * 11 8 7 14 14 C 1.46496 * 120.00037 * 179.72356 * 13 11 8 15 15 H 1.08997 * 115.51772 * 9.58549 * 14 13 11 16 16 C 1.53002 * 117.44370 * 224.24248 * 14 13 11 17 17 H 1.09001 * 119.53734 * 4.12151 * 16 14 13 18 18 C 1.57692 * 116.11439 * 161.64031 * 16 14 13 19 19 N 1.48139 * 104.67517 * 87.30536 * 18 16 14 20 20 C 1.36940 * 127.83838 * 139.77770 * 19 18 16 21 21 H 1.07999 * 119.99544 * 344.69662 * 20 19 18 22 22 C 1.38810 * 119.99907 * 164.70264 * 20 19 18 23 23 N 1.31618 * 120.00337 * 350.74429 * 22 20 19 24 24 Si 1.86798 * 120.00025 * 170.75134 * 22 20 19 25 25 H 1.48503 * 109.47130 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47740 * 119.99384 * 24 22 20 27 27 H 1.48501 * 109.47314 * 239.99871 * 24 22 20 28 28 C 1.48146 * 104.32456 * 319.77710 * 19 18 16 29 29 C 1.53002 * 117.44234 * 155.00097 * 14 13 11 30 30 H 1.08995 * 119.53653 * 355.88488 * 29 14 13 31 31 H 1.09002 * 109.47310 * 264.40967 * 1 2 3 32 32 H 1.08997 * 109.47174 * 24.40682 * 1 2 3 33 33 H 1.09000 * 109.47029 * 144.40868 * 1 2 3 34 34 H 1.08008 * 119.99820 * 0.03645 * 3 2 1 35 35 H 1.08002 * 119.99909 * 179.82629 * 4 3 2 36 36 H 1.08006 * 120.00088 * 179.97438 * 5 4 3 37 37 H 1.08005 * 120.00312 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47371 * 179.97438 * 10 8 7 39 39 H 1.08996 * 109.47159 * 300.00158 * 10 8 7 40 40 H 1.09000 * 109.47339 * 60.00034 * 10 8 7 41 41 H 0.96996 * 119.99700 * 359.72721 * 13 11 8 42 42 H 1.09004 * 110.91755 * 328.23140 * 18 16 14 43 43 H 1.09000 * 109.94021 * 205.89239 * 18 16 14 44 44 H 0.96997 * 120.00501 * 180.02562 * 23 22 20 45 45 H 1.09004 * 110.40862 * 280.79756 * 28 19 18 46 46 H 1.09002 * 110.40688 * 158.36905 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0044 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0017 7 6 2.1980 -1.1970 0.0040 8 6 1.4446 -2.5020 0.0078 9 1 0.3779 -2.3055 0.1159 10 6 1.9251 -3.3649 1.1764 11 6 1.6926 -3.2291 -1.2887 12 8 2.4102 -2.7357 -2.1329 13 7 1.1122 -4.4247 -1.5126 14 6 1.3485 -5.1286 -2.7754 15 1 2.1263 -4.7051 -3.4107 16 6 0.1387 -5.7586 -3.4686 17 1 -0.8571 -5.6121 -3.0501 18 6 0.3169 -6.1054 -4.9966 19 7 0.8996 -7.4674 -5.0068 20 6 0.5995 -8.5032 -5.8508 21 1 -0.2973 -8.4676 -6.4515 22 6 1.4477 -9.5988 -5.9339 23 7 2.6249 -9.5658 -5.3462 24 14 0.9186 -11.1199 -6.8802 25 1 -0.4388 -10.9055 -7.4431 26 1 1.8782 -11.3747 -7.9845 27 1 0.8954 -12.2891 -5.9650 28 6 1.8807 -7.4546 -3.8968 29 6 1.1895 -6.6504 -2.7749 30 1 0.9764 -7.1681 -1.8397 31 1 -0.3634 -0.1001 1.0228 32 1 -0.3633 0.9358 -0.4246 33 1 -0.3633 -0.8357 -0.5981 34 1 1.6582 2.1327 0.0006 35 1 4.1203 2.1327 -0.0072 36 1 5.3517 0.0000 -0.0096 37 1 4.1206 -2.1323 -0.0032 38 1 1.3798 -4.3087 1.1794 39 1 2.9917 -3.5615 1.0684 40 1 1.7457 -2.8391 2.1142 41 1 0.5380 -4.8190 -0.8376 42 1 0.9925 -5.3994 -5.4796 43 1 -0.6530 -6.1032 -5.4939 44 1 3.2179 -10.3312 -5.4046 45 1 2.8005 -6.9594 -4.2082 46 1 2.0897 -8.4709 -3.5626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962723453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:11 Heat of formation + Delta-G solvation = 24.099191 kcal Electronic energy + Delta-G solvation = -25540.460178 eV Core-core repulsion = 22009.615618 eV Total energy + Delta-G solvation = -3530.844560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54066 -40.41137 -39.37948 -36.08783 -35.33888 -34.19284 -33.50273 -32.10237 -30.30632 -28.81182 -27.71297 -27.59567 -25.85712 -23.96017 -22.86530 -22.10911 -21.92799 -20.93003 -20.68614 -18.86848 -18.07927 -17.89058 -17.22156 -16.74093 -16.53967 -15.95959 -15.63277 -15.47883 -15.23597 -14.87690 -14.64649 -14.56158 -14.42130 -13.93857 -13.77382 -13.46418 -13.34634 -13.26138 -13.18483 -12.97300 -12.87409 -12.75056 -12.70487 -12.51211 -12.08444 -11.98547 -11.89006 -11.79771 -11.68209 -11.59535 -10.94260 -10.81390 -10.69134 -9.69848 -9.65589 -9.45097 -8.94636 -7.93144 -5.30257 0.43302 0.53664 1.46688 1.47252 1.54925 1.58679 1.99726 2.47619 2.85865 2.89958 3.27711 3.53618 3.60392 3.75487 3.82611 3.94797 3.98153 4.06602 4.07101 4.18464 4.23656 4.28781 4.31342 4.47403 4.50994 4.64814 4.76316 4.80143 4.84875 4.87161 4.88539 4.94623 4.96323 5.01930 5.18241 5.26035 5.26953 5.33890 5.40567 5.44157 5.54016 5.61682 5.63217 5.65454 5.74529 6.14843 6.16414 6.54292 6.98635 7.24557 7.65481 8.43953 9.20941 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.002424 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.936780 B =11548.154605 C =11709.226407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.082 4.082 8 C -0.065 4.065 9 H 0.135 0.865 10 C -0.139 4.139 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.682 5.682 14 C 0.114 3.886 15 H 0.099 0.901 16 C -0.164 4.164 17 H 0.143 0.857 18 C 0.148 3.852 19 N -0.617 5.617 20 C -0.240 4.240 21 H 0.084 0.916 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.983 3.017 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.188 3.812 29 C -0.178 4.178 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.418 0.582 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.250 0.750 45 H -0.008 1.008 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 19.518 18.415 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.161 4.161 6 C -0.124 4.124 7 C -0.082 4.082 8 C -0.085 4.085 9 H 0.153 0.847 10 C -0.197 4.197 11 C 0.305 3.695 12 O -0.455 6.455 13 N -0.332 5.332 14 C 0.006 3.994 15 H 0.117 0.883 16 C -0.185 4.185 17 H 0.160 0.840 18 C 0.022 3.978 19 N -0.340 5.340 20 C -0.369 4.369 21 H 0.101 0.899 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.187 1.187 26 H -0.220 1.220 27 H -0.215 1.215 28 C 0.062 3.938 29 C -0.199 4.199 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.256 0.744 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.010 0.990 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.933 19.643 17.713 26.906 hybrid contribution 0.358 -1.259 -0.654 1.463 sum -4.575 18.384 17.059 25.494 Atomic orbital electron populations 1.20912 0.89549 1.03432 1.03517 1.20091 0.97392 0.92391 0.99092 1.21313 0.94493 0.98051 1.01155 1.21424 0.94782 0.98454 0.99435 1.21333 1.00647 0.92685 1.01445 1.21026 0.94275 0.98229 0.98908 1.19334 0.93511 0.93681 1.01688 1.20414 1.03423 0.92627 0.92086 0.84750 1.21837 1.01687 0.99701 0.96442 1.21190 0.78572 0.80546 0.89198 1.90723 1.39174 1.67303 1.48259 1.45190 1.50345 1.19952 1.17723 1.21376 0.99251 0.90786 0.87952 0.88293 1.25004 0.95409 1.03318 0.94815 0.83964 1.21827 0.97011 0.86005 0.92951 1.45431 1.45357 1.08561 1.34685 1.19440 1.04243 0.95872 1.17304 0.89863 1.25784 0.95519 1.02555 1.01899 1.70107 1.09131 1.30810 1.49604 0.84954 0.77823 0.78772 0.77391 1.18732 1.22033 1.21532 1.20802 0.89531 0.97718 0.85704 1.24301 1.03937 0.91050 1.00640 0.85493 0.89046 0.90481 0.91569 0.83962 0.84107 0.85194 0.87406 0.89819 0.93075 0.89438 0.74446 0.96417 0.91905 0.94074 0.98976 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.13 71.23 0.65 -0.85 16 2 C -0.09 -1.70 5.88 -19.87 -0.12 -1.82 16 3 C -0.13 -2.35 9.68 22.27 0.22 -2.13 16 4 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 5 C -0.14 -3.06 10.05 22.27 0.22 -2.84 16 6 C -0.11 -2.56 8.24 22.27 0.18 -2.38 16 7 C -0.08 -1.78 4.31 -19.87 -0.09 -1.87 16 8 C -0.06 -1.17 2.63 -12.29 -0.03 -1.20 16 9 H 0.13 1.70 5.73 -2.39 -0.01 1.68 16 10 C -0.14 -1.89 8.84 71.98 0.64 -1.26 16 11 C 0.52 13.79 7.05 87.66 0.62 14.40 16 12 O -0.58 -21.37 14.97 -3.05 -0.05 -21.42 16 13 N -0.68 -16.52 5.46 -442.53 -2.42 -18.93 16 14 C 0.11 3.76 5.92 44.99 0.27 4.02 16 15 H 0.10 4.01 7.40 -2.39 -0.02 3.99 16 16 C -0.16 -5.52 7.34 -8.69 -0.06 -5.58 16 17 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 18 C 0.15 6.30 7.10 87.73 0.62 6.92 16 19 N -0.62 -32.36 3.38 -681.43 -2.30 -34.66 16 20 C -0.24 -13.55 10.35 84.03 0.87 -12.68 16 21 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 22 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 23 N -0.95 -57.62 10.86 21.65 0.24 -57.38 16 24 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 28 C 0.19 9.44 5.70 86.53 0.49 9.94 16 29 C -0.18 -6.54 6.98 -9.89 -0.07 -6.61 16 30 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.84 8.05 -2.39 -0.02 0.82 16 33 H 0.07 0.88 6.55 -2.39 -0.02 0.86 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.11 2.71 7.24 -2.91 -0.02 2.68 16 38 H 0.08 0.83 7.57 -2.39 -0.02 0.82 16 39 H 0.05 0.85 7.09 -2.39 -0.02 0.84 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.42 6.89 8.25 -92.71 -0.77 6.13 16 42 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 46 H 0.06 3.37 6.50 -2.39 -0.02 3.36 16 Total: -1.00 -75.30 371.91 2.81 -72.49 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.22 Total: 21.48 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 5.09 Total: -9.16 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.49 Total: -110.98 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.30 2.81 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962723453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.588 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds