Wall clock time and date at job start Tue Mar 31 2020 10:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 120.00192 * 2 1 4 4 C 1.38220 * 120.00040 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.38219 * 119.99807 * 359.77056 * 5 4 3 7 7 C 1.38210 * 119.99912 * 180.02562 * 2 1 3 8 8 C 1.50703 * 120.00070 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.46833 * 2.78401 * 8 7 2 10 10 C 1.52999 * 109.47445 * 122.78997 * 8 7 2 11 11 C 1.50704 * 109.46992 * 242.79142 * 8 7 2 12 12 O 1.21274 * 120.00240 * 359.97438 * 11 8 7 13 13 N 1.34781 * 119.99551 * 179.97438 * 11 8 7 14 14 C 1.46499 * 119.99751 * 179.97438 * 13 11 8 15 15 H 1.09008 * 115.51569 * 9.58212 * 14 13 11 16 16 C 1.53002 * 117.44541 * 224.24461 * 14 13 11 17 17 H 1.08999 * 119.53453 * 4.10833 * 16 14 13 18 18 C 1.54383 * 118.12468 * 160.81205 * 16 14 13 19 19 N 1.48144 * 104.62136 * 87.18643 * 18 16 14 20 20 C 1.36941 * 127.83995 * 140.39136 * 19 18 16 21 21 H 1.07993 * 119.99601 * 343.43672 * 20 19 18 22 22 C 1.38809 * 119.99976 * 163.43467 * 20 19 18 23 23 N 1.31621 * 120.00177 * 349.98092 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 169.98091 * 22 20 19 25 25 H 1.48507 * 109.46909 * 94.97981 * 24 22 20 26 26 H 1.48495 * 109.47091 * 214.97999 * 24 22 20 27 27 H 1.48500 * 109.47398 * 334.98041 * 24 22 20 28 28 C 1.48150 * 104.32306 * 320.41637 * 19 18 16 29 29 C 1.52994 * 117.44480 * 155.00072 * 14 13 11 30 30 H 1.09004 * 119.53591 * 355.87930 * 29 14 13 31 31 H 1.08997 * 109.47193 * 264.27481 * 1 2 3 32 32 H 1.09004 * 109.46508 * 24.27906 * 1 2 3 33 33 H 1.08999 * 109.46675 * 144.27179 * 1 2 3 34 34 H 1.08003 * 119.99833 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.99620 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00225 * 179.97438 * 5 4 3 37 37 H 1.08003 * 119.99633 * 180.25611 * 6 5 4 38 38 H 1.08994 * 109.47625 * 180.02562 * 10 8 7 39 39 H 1.09008 * 109.46747 * 300.00303 * 10 8 7 40 40 H 1.08997 * 109.47127 * 59.99712 * 10 8 7 41 41 H 0.96993 * 120.00241 * 0.02562 * 13 11 8 42 42 H 1.08997 * 110.40459 * 205.97403 * 18 16 14 43 43 H 1.09007 * 110.40544 * 328.40006 * 18 16 14 44 44 H 0.96994 * 120.00014 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.40139 * 280.79774 * 28 19 18 46 46 H 1.09003 * 110.40943 * 158.37039 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5806 -1.1970 0.0048 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.3739 -2.3034 -0.0500 10 6 1.8656 -3.3341 -1.2135 11 6 1.7565 -3.2622 1.2628 12 8 2.5162 -2.7909 2.0822 13 7 1.1911 -4.4659 1.4820 14 6 1.4948 -5.2051 2.7098 15 1 2.0520 -4.6514 3.4656 16 6 1.7824 -6.7021 2.5788 17 1 1.8210 -7.1573 1.5891 18 6 2.5293 -7.4035 3.7336 19 7 1.4621 -7.8080 4.6781 20 6 1.3692 -8.9729 5.3919 21 1 1.9681 -9.8269 5.1120 22 6 0.5054 -9.0561 6.4753 23 7 -0.0747 -7.9696 6.9394 24 14 0.1662 -10.7101 7.2745 25 1 1.0734 -10.8940 8.4357 26 1 -1.2444 -10.7567 7.7361 27 1 0.3999 -11.7943 6.2871 28 6 0.5177 -6.6665 4.6748 29 6 0.4561 -6.2162 3.1993 30 1 -0.4933 -6.3093 2.6719 31 1 -0.3633 -0.1025 1.0225 32 1 -0.3632 0.9368 -0.4226 33 1 -0.3632 -0.8343 -0.6001 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1326 0.0001 36 1 5.3518 -0.0001 0.0005 37 1 4.1206 -2.1323 0.0090 38 1 1.3203 -4.2779 -1.2138 39 1 1.6399 -2.7842 -2.1273 40 1 2.9361 -3.5327 -1.1640 41 1 0.5838 -4.8430 0.8265 42 1 3.0625 -8.2796 3.3647 43 1 3.2206 -6.7115 4.2149 44 1 -0.6786 -8.0278 7.6962 45 1 0.8948 -5.8595 5.3031 46 1 -0.4668 -6.9866 5.0160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962723456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:16 Heat of formation + Delta-G solvation = 42.491736 kcal Electronic energy + Delta-G solvation = -25538.802801 eV Core-core repulsion = 22008.755801 eV Total energy + Delta-G solvation = -3530.047000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53620 -39.24486 -38.15061 -34.53996 -34.38135 -32.84046 -32.50421 -30.35680 -29.46819 -27.15447 -27.02129 -25.81831 -24.89413 -22.75123 -21.72675 -21.01852 -20.44177 -19.65414 -19.26408 -17.13152 -16.97439 -16.74937 -16.11805 -15.64926 -15.04315 -14.71225 -14.59565 -14.27717 -13.89341 -13.71144 -13.54647 -13.23851 -13.20992 -12.80664 -12.74394 -12.58319 -12.35168 -12.19855 -12.01571 -11.85224 -11.52664 -11.48702 -11.05237 -10.98876 -10.86734 -10.83641 -10.39560 -10.19701 -10.16366 -9.75978 -9.67595 -9.19414 -8.86190 -8.73316 -8.69177 -8.32579 -6.86346 -5.81028 -3.14982 1.21474 1.32564 2.65535 3.12391 3.37750 3.43267 3.45429 3.70601 4.29347 4.33846 4.46456 4.54787 4.74284 4.76924 4.88281 4.95536 5.03531 5.10896 5.16141 5.32923 5.35617 5.37824 5.37980 5.44388 5.49511 5.56754 5.62374 5.63761 5.81739 5.83395 5.90546 5.94311 6.00607 6.14792 6.24188 6.36790 6.42636 6.52337 6.52902 6.69631 6.81626 6.90030 6.91123 7.33711 7.51546 7.59533 7.70369 8.19369 8.30898 9.09907 9.72906 10.50506 11.33852 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.002415 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.509167 B =11589.908005 C =11673.211015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.081 4.081 7 C -0.065 4.065 8 C -0.077 4.077 9 H 0.108 0.892 10 C -0.141 4.141 11 C 0.519 3.481 12 O -0.527 6.527 13 N -0.697 5.697 14 C 0.098 3.902 15 H 0.131 0.869 16 C -0.185 4.185 17 H 0.102 0.898 18 C 0.155 3.845 19 N -0.593 5.593 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.005 4.005 23 N -0.914 5.914 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.187 3.813 29 C -0.179 4.179 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.255 0.745 45 H 0.027 0.973 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 15.707 -19.411 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.099 4.099 7 C -0.065 4.065 8 C -0.098 4.098 9 H 0.126 0.874 10 C -0.198 4.198 11 C 0.305 3.695 12 O -0.403 6.403 13 N -0.346 5.346 14 C -0.008 4.008 15 H 0.148 0.852 16 C -0.206 4.206 17 H 0.120 0.880 18 C 0.029 3.971 19 N -0.316 5.316 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.560 5.560 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.061 3.939 29 C -0.201 4.201 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.127 15.913 -18.580 24.555 hybrid contribution -0.542 -1.032 0.107 1.171 sum 1.585 14.881 -18.473 23.774 Atomic orbital electron populations 1.20878 0.91441 1.02637 1.02645 1.19711 0.95851 0.92593 0.99745 1.20939 0.94281 0.97140 1.01920 1.21100 0.94303 0.97950 1.00177 1.21087 0.99817 0.92466 1.01208 1.20903 0.93461 0.98134 0.97411 1.19107 0.93587 0.92600 1.01229 1.20391 1.02025 0.93288 0.94136 0.87384 1.21801 1.02547 0.99279 0.96214 1.20395 0.80394 0.80957 0.87775 1.90730 1.35288 1.67757 1.46500 1.45382 1.47989 1.19286 1.21961 1.21838 1.02708 0.88173 0.88079 0.85167 1.24365 1.01457 0.94676 1.00132 0.87998 1.21113 0.91117 0.96002 0.88906 1.45175 1.20145 1.17271 1.49014 1.18982 1.22309 0.87876 1.06441 0.90575 1.24919 1.01070 0.97400 0.96858 1.69915 1.33553 1.25976 1.26526 0.86106 0.77420 0.83003 0.79239 1.21466 1.21560 1.20508 1.21005 0.97000 0.88995 0.86907 1.24674 0.92860 1.01206 1.01335 0.88010 0.90920 0.91482 0.91262 0.86232 0.86302 0.86215 0.86293 0.91647 0.91245 0.91691 0.76855 0.93030 0.95518 0.93535 0.95545 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.25 36.01 0.33 -0.62 16 2 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 6 C -0.08 -0.96 8.05 -39.58 -0.32 -1.28 16 7 C -0.06 -0.74 4.36 -104.62 -0.46 -1.20 16 8 C -0.08 -0.78 2.71 -92.92 -0.25 -1.03 16 9 H 0.11 0.89 5.56 -51.93 -0.29 0.60 16 10 C -0.14 -1.09 8.88 37.16 0.33 -0.76 16 11 C 0.52 7.19 7.04 -10.98 -0.08 7.12 16 12 O -0.53 -9.59 14.83 5.56 0.08 -9.51 16 13 N -0.70 -9.17 5.46 -53.80 -0.29 -9.47 16 14 C 0.10 1.65 5.97 -67.93 -0.41 1.25 16 15 H 0.13 2.55 7.40 -51.92 -0.38 2.16 16 16 C -0.18 -3.29 7.06 -89.22 -0.63 -3.92 16 17 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 18 C 0.16 3.32 7.04 -2.41 -0.02 3.30 16 19 N -0.59 -15.27 3.38 -168.86 -0.57 -15.84 16 20 C -0.23 -6.36 10.34 -15.06 -0.16 -6.52 16 21 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 22 C -0.01 -0.15 5.38 -17.43 -0.09 -0.24 16 23 N -0.91 -26.85 10.96 55.49 0.61 -26.24 16 24 Si 0.91 21.89 29.57 -169.99 -5.03 16.87 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.19 4.51 5.67 -2.41 -0.01 4.50 16 29 C -0.18 -3.36 7.05 -89.22 -0.63 -3.99 16 30 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.07 0.46 6.38 -51.93 -0.33 0.13 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.40 7.43 -52.48 -0.39 1.01 16 38 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 39 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.06 0.55 7.25 -51.93 -0.38 0.17 16 41 H 0.40 4.02 8.25 -40.82 -0.34 3.69 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 2.34 6.62 -51.93 -0.34 2.00 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.05 371.79 -10.81 -43.86 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.04 Total: 4.47 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -4.18 Total: -9.74 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.26 Total: -51.55 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.05 -10.81 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962723456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.354 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds