Wall clock time and date at job start Tue Mar 31 2020 10:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 120.00192 * 2 1 4 4 C 1.38220 * 120.00040 * 179.97438 * 3 2 1 5 5 C 1.38247 * 120.00081 * 0.02562 * 4 3 2 6 6 C 1.38219 * 119.99807 * 359.77056 * 5 4 3 7 7 C 1.38210 * 119.99912 * 180.02562 * 2 1 3 8 8 C 1.50703 * 120.00070 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.46833 * 2.78401 * 8 7 2 10 10 C 1.52999 * 109.47445 * 122.78997 * 8 7 2 11 11 C 1.50704 * 109.46992 * 242.79142 * 8 7 2 12 12 O 1.21274 * 120.00240 * 359.97438 * 11 8 7 13 13 N 1.34781 * 119.99551 * 179.97438 * 11 8 7 14 14 C 1.46499 * 119.99751 * 179.97438 * 13 11 8 15 15 H 1.09008 * 115.51569 * 9.58212 * 14 13 11 16 16 C 1.53002 * 117.44541 * 224.24461 * 14 13 11 17 17 H 1.08999 * 119.53453 * 4.10833 * 16 14 13 18 18 C 1.54383 * 118.12468 * 160.81205 * 16 14 13 19 19 N 1.48144 * 104.62136 * 87.18643 * 18 16 14 20 20 C 1.36941 * 127.83995 * 140.39136 * 19 18 16 21 21 H 1.07993 * 119.99601 * 343.43672 * 20 19 18 22 22 C 1.38809 * 119.99976 * 163.43467 * 20 19 18 23 23 N 1.31621 * 120.00177 * 349.98092 * 22 20 19 24 24 Si 1.86799 * 119.99857 * 169.98091 * 22 20 19 25 25 H 1.48507 * 109.46909 * 94.97981 * 24 22 20 26 26 H 1.48495 * 109.47091 * 214.97999 * 24 22 20 27 27 H 1.48500 * 109.47398 * 334.98041 * 24 22 20 28 28 C 1.48150 * 104.32306 * 320.41637 * 19 18 16 29 29 C 1.52994 * 117.44480 * 155.00072 * 14 13 11 30 30 H 1.09004 * 119.53591 * 355.87930 * 29 14 13 31 31 H 1.08997 * 109.47193 * 264.27481 * 1 2 3 32 32 H 1.09004 * 109.46508 * 24.27906 * 1 2 3 33 33 H 1.08999 * 109.46675 * 144.27179 * 1 2 3 34 34 H 1.08003 * 119.99833 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.99620 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00225 * 179.97438 * 5 4 3 37 37 H 1.08003 * 119.99633 * 180.25611 * 6 5 4 38 38 H 1.08994 * 109.47625 * 180.02562 * 10 8 7 39 39 H 1.09008 * 109.46747 * 300.00303 * 10 8 7 40 40 H 1.08997 * 109.47127 * 59.99712 * 10 8 7 41 41 H 0.96993 * 120.00241 * 0.02562 * 13 11 8 42 42 H 1.08997 * 110.40459 * 205.97403 * 18 16 14 43 43 H 1.09007 * 110.40544 * 328.40006 * 18 16 14 44 44 H 0.96994 * 120.00014 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.40139 * 280.79774 * 28 19 18 46 46 H 1.09003 * 110.40943 * 158.37039 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5806 -1.1970 0.0048 7 6 2.1981 -1.1969 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.3739 -2.3034 -0.0500 10 6 1.8656 -3.3341 -1.2135 11 6 1.7565 -3.2622 1.2628 12 8 2.5162 -2.7909 2.0822 13 7 1.1911 -4.4659 1.4820 14 6 1.4948 -5.2051 2.7098 15 1 2.0520 -4.6514 3.4656 16 6 1.7824 -6.7021 2.5788 17 1 1.8210 -7.1573 1.5891 18 6 2.5293 -7.4035 3.7336 19 7 1.4621 -7.8080 4.6781 20 6 1.3692 -8.9729 5.3919 21 1 1.9681 -9.8269 5.1120 22 6 0.5054 -9.0561 6.4753 23 7 -0.0747 -7.9696 6.9394 24 14 0.1662 -10.7101 7.2745 25 1 1.0734 -10.8940 8.4357 26 1 -1.2444 -10.7567 7.7361 27 1 0.3999 -11.7943 6.2871 28 6 0.5177 -6.6665 4.6748 29 6 0.4561 -6.2162 3.1993 30 1 -0.4933 -6.3093 2.6719 31 1 -0.3633 -0.1025 1.0225 32 1 -0.3632 0.9368 -0.4226 33 1 -0.3632 -0.8343 -0.6001 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1326 0.0001 36 1 5.3518 -0.0001 0.0005 37 1 4.1206 -2.1323 0.0090 38 1 1.3203 -4.2779 -1.2138 39 1 1.6399 -2.7842 -2.1273 40 1 2.9361 -3.5327 -1.1640 41 1 0.5838 -4.8430 0.8265 42 1 3.0625 -8.2796 3.3647 43 1 3.2206 -6.7115 4.2149 44 1 -0.6786 -8.0278 7.6962 45 1 0.8948 -5.8595 5.3031 46 1 -0.4668 -6.9866 5.0160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962723456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:15 Heat of formation + Delta-G solvation = 23.255266 kcal Electronic energy + Delta-G solvation = -25539.636957 eV Core-core repulsion = 22008.755801 eV Total energy + Delta-G solvation = -3530.881155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55703 -40.48321 -39.41787 -36.08259 -35.34158 -34.21894 -33.48608 -32.09340 -30.30975 -28.94468 -27.72324 -27.62076 -25.81291 -23.99206 -22.90079 -22.09373 -21.92836 -20.91772 -20.67216 -18.88034 -18.11031 -17.90436 -17.22629 -16.72705 -16.49812 -15.97722 -15.68631 -15.50329 -15.21315 -14.87129 -14.66600 -14.53793 -14.36861 -13.94482 -13.75437 -13.55178 -13.38603 -13.24388 -13.19412 -12.96621 -12.87613 -12.73792 -12.71438 -12.50178 -12.13074 -12.05237 -11.89323 -11.80293 -11.66564 -11.57792 -10.91364 -10.79721 -10.68149 -9.71034 -9.64821 -9.45706 -8.93320 -7.93866 -5.30754 0.43379 0.54075 1.46536 1.47787 1.54954 1.58222 1.99031 2.47774 2.83709 2.90044 3.27441 3.53293 3.59684 3.74499 3.83267 3.92779 3.99902 4.07103 4.13032 4.18266 4.22202 4.30140 4.37509 4.48398 4.49605 4.65824 4.77046 4.80073 4.84660 4.86208 4.89139 4.95425 4.96812 5.02438 5.18813 5.26260 5.27303 5.34301 5.39875 5.44234 5.54043 5.61509 5.61973 5.65654 5.75046 6.14588 6.16552 6.54337 6.98351 7.24523 7.65318 8.44363 9.20697 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.002415 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.509167 B =11589.908005 C =11673.211015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.083 4.083 8 C -0.066 4.066 9 H 0.133 0.867 10 C -0.138 4.138 11 C 0.518 3.482 12 O -0.576 6.576 13 N -0.681 5.681 14 C 0.118 3.882 15 H 0.100 0.900 16 C -0.166 4.166 17 H 0.138 0.862 18 C 0.147 3.853 19 N -0.616 5.616 20 C -0.243 4.243 21 H 0.083 0.917 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.983 3.017 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.265 1.265 28 C 0.190 3.810 29 C -0.177 4.177 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.418 0.582 42 H 0.064 0.936 43 H 0.014 0.986 44 H 0.250 0.750 45 H -0.007 1.007 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 15.741 -22.153 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.161 4.161 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.087 4.087 9 H 0.150 0.850 10 C -0.195 4.195 11 C 0.306 3.694 12 O -0.454 6.454 13 N -0.332 5.332 14 C 0.011 3.989 15 H 0.117 0.883 16 C -0.187 4.187 17 H 0.155 0.845 18 C 0.022 3.978 19 N -0.340 5.340 20 C -0.371 4.371 21 H 0.100 0.900 22 C -0.257 4.257 23 N -0.595 5.595 24 Si 0.810 3.190 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.190 1.190 28 C 0.064 3.936 29 C -0.198 4.198 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.256 0.744 42 H 0.082 0.918 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.011 0.989 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.276 15.943 -21.386 26.705 hybrid contribution -0.179 -0.940 0.988 1.375 sum 1.097 15.003 -20.398 25.345 Atomic orbital electron populations 1.20933 0.89666 1.04321 1.02644 1.20081 0.97324 0.92452 0.99208 1.21312 0.94540 0.98026 1.01229 1.21425 0.94737 0.98505 0.99433 1.21339 1.00669 0.92657 1.01450 1.21011 0.94179 0.98230 0.98638 1.19339 0.93581 0.93648 1.01761 1.20416 1.03230 0.92452 0.92607 0.84978 1.21830 1.02092 0.99983 0.95626 1.21163 0.79176 0.80657 0.88425 1.90720 1.37426 1.68837 1.48425 1.45170 1.48204 1.18928 1.20849 1.21326 1.00859 0.87799 0.88961 0.88258 1.24268 0.99352 0.94981 1.00132 0.84453 1.21249 0.90598 0.96646 0.89340 1.45486 1.21874 1.17050 1.49615 1.19397 1.22087 0.88912 1.06717 0.89957 1.25803 1.01224 1.00933 0.97696 1.70115 1.34326 1.28118 1.26991 0.85018 0.76750 0.79018 0.78223 1.21402 1.21773 1.18957 1.20739 0.94891 0.87813 0.90126 1.24351 0.94737 1.02906 0.97791 0.85242 0.91598 0.89795 0.89714 0.84056 0.84124 0.85114 0.87305 0.89721 0.89531 0.92836 0.74415 0.91775 0.96791 0.94054 0.98905 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.25 71.24 0.66 -0.93 16 2 C -0.09 -1.74 5.88 -19.87 -0.12 -1.86 16 3 C -0.13 -2.39 9.68 22.27 0.22 -2.18 16 4 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 5 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 6 C -0.10 -2.43 8.05 22.27 0.18 -2.25 16 7 C -0.08 -1.80 4.36 -19.87 -0.09 -1.88 16 8 C -0.07 -1.19 2.71 -12.28 -0.03 -1.22 16 9 H 0.13 1.72 5.56 -2.39 -0.01 1.71 16 10 C -0.14 -1.74 8.88 71.98 0.64 -1.10 16 11 C 0.52 13.71 7.04 87.66 0.62 14.32 16 12 O -0.58 -21.19 14.83 -3.01 -0.04 -21.24 16 13 N -0.68 -16.37 5.46 -442.53 -2.41 -18.79 16 14 C 0.12 3.89 5.97 44.99 0.27 4.15 16 15 H 0.10 4.01 7.40 -2.38 -0.02 3.99 16 16 C -0.17 -5.61 7.06 -9.89 -0.07 -5.68 16 17 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 18 C 0.15 6.28 7.04 86.53 0.61 6.89 16 19 N -0.62 -32.37 3.38 -688.15 -2.32 -34.69 16 20 C -0.24 -13.71 10.34 84.03 0.87 -12.84 16 21 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 22 C -0.06 -3.59 5.38 84.86 0.46 -3.13 16 23 N -0.95 -57.65 10.96 21.65 0.24 -57.42 16 24 Si 0.98 45.53 29.57 68.60 2.03 47.55 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.19 9.52 5.67 86.53 0.49 10.01 16 29 C -0.18 -6.46 7.05 -9.89 -0.07 -6.53 16 30 H 0.13 4.05 8.14 -2.38 -0.02 4.03 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.82 8.05 -2.38 -0.02 0.80 16 33 H 0.08 0.84 6.38 -2.39 -0.02 0.82 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.11 2.67 7.43 -2.91 -0.02 2.65 16 38 H 0.08 0.74 7.57 -2.39 -0.02 0.73 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.05 0.81 7.25 -2.39 -0.02 0.80 16 41 H 0.42 6.81 8.25 -92.71 -0.76 6.04 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.06 3.18 6.62 -2.39 -0.02 3.17 16 Total: -1.00 -75.30 371.79 2.78 -72.52 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.22 Total: 21.12 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.07 Total: -9.06 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.50 Total: -110.90 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.30 2.78 -72.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962723456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.778 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds