Wall clock time and date at job start Tue Mar 31 2020 10:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37976 * 120.07272 * 2 1 4 4 C 1.38343 * 120.14634 * 180.02562 * 3 2 1 5 5 C 1.38378 * 120.28943 * 359.97438 * 4 3 2 6 6 C 1.37939 * 120.14626 * 0.27694 * 5 4 3 7 7 C 1.39557 * 120.07502 * 180.02562 * 2 1 3 8 8 C 1.47848 * 120.14337 * 359.97438 * 7 2 1 9 9 O 1.21551 * 119.99851 * 6.03440 * 8 7 2 10 10 N 1.34777 * 119.99996 * 186.03093 * 8 7 2 11 11 C 1.46504 * 119.99822 * 180.02562 * 10 8 7 12 12 C 1.53957 * 113.57495 * 252.71809 * 11 10 8 13 13 C 1.52907 * 86.77789 * 220.66601 * 12 11 10 14 14 C 1.52911 * 121.13189 * 150.62183 * 13 12 11 15 15 C 1.53955 * 86.78166 * 100.82096 * 14 13 12 16 16 N 1.46505 * 113.57859 * 139.33555 * 15 14 13 17 17 C 1.36935 * 119.99663 * 107.27972 * 16 15 14 18 18 H 1.08001 * 120.00548 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99747 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47232 * 59.99568 * 21 19 17 23 23 H 1.48502 * 109.47237 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47201 * 299.99509 * 21 19 17 25 25 C 1.52916 * 121.13522 * 259.17865 * 13 12 11 26 26 C 1.52903 * 88.04771 * 24.89952 * 13 12 11 27 27 H 1.09002 * 109.47226 * 96.55225 * 1 2 3 28 28 H 1.09005 * 109.47183 * 216.54540 * 1 2 3 29 29 H 1.08999 * 109.47505 * 336.54630 * 1 2 3 30 30 H 1.08003 * 119.92776 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.85353 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.93029 * 179.97438 * 5 4 3 33 33 H 1.08005 * 120.07325 * 179.72451 * 6 5 4 34 34 H 0.97000 * 120.00028 * 0.02562 * 10 8 7 35 35 H 1.08988 * 112.82615 * 23.90937 * 11 10 8 36 36 H 1.08997 * 113.66087 * 335.13885 * 12 11 10 37 37 H 1.09002 * 113.65523 * 106.19585 * 12 11 10 38 38 H 1.09007 * 113.66071 * 215.28984 * 14 13 12 39 39 H 1.08998 * 113.66683 * 346.34674 * 14 13 12 40 40 H 1.08998 * 113.57818 * 270.12551 * 15 14 13 41 41 H 0.96997 * 119.99647 * 287.27744 * 16 15 14 42 42 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.66059 * 13.65426 * 25 13 12 44 44 H 1.08998 * 113.65861 * 144.61817 * 25 13 12 45 45 H 1.08995 * 113.66712 * 220.63002 * 26 13 12 46 46 H 1.09008 * 113.66130 * 89.56889 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0018 -0.0005 6 6 3.6022 -1.1988 -0.0058 7 6 2.2063 -1.2077 -0.0005 8 6 1.4720 -2.4909 -0.0005 9 8 0.2615 -2.4984 -0.1107 10 7 2.1447 -3.6523 0.1216 11 6 1.4171 -4.9239 0.1210 12 6 1.3502 -5.5957 1.5047 13 6 1.5952 -6.9188 0.7785 14 6 2.3160 -8.0776 1.4683 15 6 0.9237 -8.6941 1.6958 16 7 0.8830 -10.1433 1.4851 17 6 0.7724 -10.9881 2.5571 18 1 0.7156 -10.5862 3.5580 19 6 0.7343 -12.3614 2.3576 20 7 0.8040 -12.8513 1.1380 21 14 0.5842 -13.5139 3.8199 22 1 -0.6743 -13.2228 4.5525 23 1 0.5644 -14.9198 3.3422 24 1 1.7426 -13.3154 4.7276 25 6 0.4452 -7.8812 0.4792 26 6 2.2693 -6.1209 -0.3382 27 1 -0.3634 -0.1173 -1.0210 28 1 -0.3634 -0.8256 0.6120 29 1 -0.3634 0.9427 0.4090 30 1 1.6584 2.1294 0.0004 31 1 4.1182 2.1331 -0.0001 32 1 5.3613 0.0100 -0.0014 33 1 4.1494 -2.1300 -0.0103 34 1 3.1107 -3.6463 0.2098 35 1 0.4516 -4.8583 -0.3803 36 1 2.1622 -5.3057 2.1714 37 1 0.3694 -5.5302 1.9757 38 1 2.9483 -8.6604 0.7984 39 1 2.8233 -7.7910 2.3895 40 1 0.4598 -8.3891 2.6338 41 1 0.9343 -10.5043 0.5863 42 1 0.7778 -13.8108 0.9985 43 1 -0.5418 -7.4376 0.6102 44 1 0.5509 -8.4075 -0.4695 45 1 2.0229 -6.4750 -1.3391 46 1 3.3398 -5.9786 -0.1892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963515329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:59 Heat of formation + Delta-G solvation = 41.598293 kcal Electronic energy + Delta-G solvation = -24974.935183 eV Core-core repulsion = 21444.849441 eV Total energy + Delta-G solvation = -3530.085742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85569 -39.96985 -38.37185 -35.93090 -33.90892 -32.88688 -32.44709 -31.11552 -29.47306 -27.32990 -25.77137 -25.24456 -24.60832 -23.85345 -22.65309 -21.49557 -20.71726 -20.01915 -18.13571 -17.65827 -16.97373 -16.54852 -16.03634 -15.43691 -15.38788 -15.27188 -14.93629 -14.68520 -14.14190 -13.92692 -13.59838 -13.46972 -13.41150 -12.80397 -12.57322 -12.43230 -12.34589 -12.26278 -12.11623 -12.05880 -11.65948 -11.46097 -11.28699 -10.97753 -10.87620 -10.68351 -10.34602 -10.08209 -9.80999 -9.74515 -9.70350 -9.41886 -9.32934 -9.16483 -8.95131 -8.83661 -6.93337 -5.76190 -3.04515 0.51787 0.96037 2.63274 2.99417 3.44685 3.49043 3.50059 3.50268 4.36760 4.38560 4.48337 4.58095 4.58901 4.64345 4.70946 4.79016 4.90507 4.93098 5.05455 5.29088 5.41191 5.43270 5.47537 5.52189 5.58307 5.60418 5.72342 5.80027 5.87343 5.92556 5.94349 5.97735 6.01107 6.03242 6.11775 6.20481 6.23716 6.29338 6.38547 6.44493 6.51811 6.52569 6.65887 6.95035 7.15744 7.35220 7.71071 8.04785 8.42728 9.53551 10.12519 10.46966 11.46241 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.036681 B = 0.002051 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.150323 B =13647.010095 C =13878.069708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.022 4.022 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.140 4.140 8 C 0.556 3.444 9 O -0.531 6.531 10 N -0.714 5.714 11 C 0.123 3.877 12 C -0.124 4.124 13 C -0.102 4.102 14 C -0.149 4.149 15 C 0.168 3.832 16 N -0.713 5.713 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.129 4.129 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.398 0.602 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 29.134 -4.084 30.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.023 4.023 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.143 4.143 8 C 0.344 3.656 9 O -0.409 6.409 10 N -0.365 5.365 11 C 0.019 3.981 12 C -0.163 4.163 13 C -0.103 4.103 14 C -0.190 4.190 15 C 0.057 3.943 16 N -0.351 5.351 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.168 4.168 26 C -0.169 4.169 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.233 0.767 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.918 28.965 -3.999 29.832 hybrid contribution 0.707 -0.747 0.482 1.136 sum 6.625 28.217 -3.517 29.197 Atomic orbital electron populations 1.21109 0.89923 1.03111 1.03775 1.20103 0.97006 0.91496 0.93726 1.21096 0.94300 0.97567 1.02152 1.21359 0.94287 0.98340 0.97001 1.21088 1.00229 0.92201 1.01922 1.21314 0.92948 0.98645 0.97179 1.19869 0.93632 0.93396 1.07414 1.18310 0.87212 0.83778 0.76310 1.90729 1.13646 1.87081 1.49490 1.46020 1.10625 1.05827 1.73985 1.22668 0.97186 0.80231 0.97990 1.23142 1.02456 0.94465 0.96198 1.22075 0.99165 0.92628 0.96431 1.23642 1.00373 0.95739 0.99218 1.21537 0.92878 0.84554 0.95380 1.42411 1.86533 0.99160 1.07023 1.19268 1.42376 0.87805 0.87908 0.91182 1.24764 1.02935 0.96869 0.96460 1.69649 1.57437 1.12041 1.19027 0.86262 0.77900 0.80176 0.81819 1.21257 1.21712 1.21279 1.23211 0.96075 0.96567 1.00905 1.23179 0.99164 0.94920 0.99595 0.90605 0.88458 0.92462 0.85394 0.85610 0.85437 0.85612 0.76673 0.86693 0.89889 0.90899 0.90303 0.92744 0.90808 0.78121 0.93457 0.92061 0.90027 0.90794 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.74 36.00 0.31 -0.87 16 2 C -0.02 -0.21 5.91 -104.23 -0.62 -0.83 16 3 C -0.13 -1.00 9.66 -39.64 -0.38 -1.38 16 4 C -0.09 -0.59 10.04 -39.49 -0.40 -0.99 16 5 C -0.14 -0.89 10.03 -39.64 -0.40 -1.29 16 6 C -0.08 -0.62 9.53 -39.19 -0.37 -1.00 16 7 C -0.14 -1.40 5.87 -104.97 -0.62 -2.01 16 8 C 0.56 6.58 7.70 -12.33 -0.09 6.48 16 9 O -0.53 -7.84 12.94 5.32 0.07 -7.77 16 10 N -0.71 -7.19 5.30 -53.79 -0.29 -7.48 16 11 C 0.12 1.43 4.24 -66.94 -0.28 1.15 16 12 C -0.12 -1.54 7.64 -26.28 -0.20 -1.74 16 13 C -0.10 -1.42 1.11 -154.71 -0.17 -1.59 16 14 C -0.15 -2.52 7.64 -26.28 -0.20 -2.72 16 15 C 0.17 3.34 4.48 -66.94 -0.30 3.04 16 16 N -0.71 -17.97 5.40 -52.47 -0.28 -18.26 16 17 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.13 -2.12 7.59 -26.28 -0.20 -2.32 16 26 C -0.13 -1.50 7.59 -26.29 -0.20 -1.70 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.15 5.85 -51.93 -0.30 0.84 16 29 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 30 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.13 0.68 6.46 -52.48 -0.34 0.34 16 34 H 0.40 2.98 6.80 -40.82 -0.28 2.70 16 35 H 0.12 1.53 7.46 -51.94 -0.39 1.14 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 41 H 0.38 10.26 7.92 -40.82 -0.32 9.94 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.83 8.12 -51.92 -0.42 0.41 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -32.13 374.99 -10.60 -42.73 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.09 Total: 10.41 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -4.37 Total: -15.19 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.16 Total: -53.28 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.07 Total: -7.77 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.13 -10.60 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963515329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.331 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds