Wall clock time and date at job start Tue Mar 31 2020 10:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38383 * 119.93140 * 2 1 4 4 C 1.38331 * 120.29425 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14453 * 359.97438 * 4 3 2 6 6 C 1.39556 * 119.85039 * 0.02562 * 5 4 3 7 7 C 1.47850 * 120.14204 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00167 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99798 * 359.97438 * 7 6 5 10 10 C 1.46498 * 119.99983 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.58380 * 205.00420 * 10 9 7 12 12 C 1.52905 * 86.78040 * 220.66109 * 11 10 9 13 13 C 1.52917 * 121.13340 * 150.61456 * 12 11 10 14 14 C 1.53957 * 86.77928 * 150.61497 * 13 12 11 15 15 N 1.46499 * 113.58030 * 220.66444 * 14 13 12 16 16 C 1.36934 * 119.99782 * 205.00320 * 15 14 13 17 17 H 1.07999 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99964 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47337 * 89.99817 * 20 18 16 22 22 H 1.48495 * 109.47308 * 210.00239 * 20 18 16 23 23 H 1.48505 * 109.46714 * 329.99624 * 20 18 16 24 24 C 1.52909 * 121.13655 * 259.17353 * 12 11 10 25 25 C 1.52910 * 88.04631 * 24.89586 * 12 11 10 26 26 C 1.37938 * 119.92603 * 180.28008 * 2 1 3 27 27 H 1.09003 * 109.47080 * 89.99694 * 1 2 3 28 28 H 1.08997 * 109.47208 * 209.99810 * 1 2 3 29 29 H 1.08997 * 109.46829 * 330.00223 * 1 2 3 30 30 H 1.08003 * 119.84964 * 0.04445 * 3 2 1 31 31 H 1.07998 * 119.92879 * 179.97438 * 4 3 2 32 32 H 1.08006 * 120.07361 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00247 * 0.02562 * 9 7 6 34 34 H 1.09009 * 112.87577 * 336.14188 * 10 9 7 35 35 H 1.08990 * 113.66623 * 106.18266 * 11 10 9 36 36 H 1.09008 * 113.65560 * 335.13415 * 11 10 9 37 37 H 1.08997 * 113.66031 * 265.08631 * 13 12 11 38 38 H 1.09002 * 113.66187 * 36.15037 * 13 12 11 39 39 H 1.09001 * 113.57949 * 89.86751 * 14 13 12 40 40 H 0.96996 * 119.99947 * 24.99948 * 15 14 13 41 41 H 0.97005 * 120.00007 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.66026 * 323.85782 * 24 12 11 43 43 H 1.08998 * 113.66179 * 94.82069 * 24 12 11 44 44 H 1.09006 * 113.66074 * 89.56978 * 25 12 11 45 45 H 1.08994 * 113.66448 * 220.62942 * 25 12 11 46 46 H 1.08007 * 120.07283 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2813 0.0192 -0.0005 6 6 3.5910 -1.1937 -0.0005 7 6 4.3351 -2.4713 -0.0011 8 8 3.7314 -3.5262 -0.0016 9 7 5.6829 -2.4662 -0.0022 10 6 6.4202 -3.7321 -0.0033 11 6 7.8356 -3.6211 0.5920 12 6 8.2905 -4.5437 -0.5393 13 6 9.7107 -4.4654 -1.1007 14 6 9.5730 -5.9647 -1.4226 15 7 10.7855 -6.7379 -1.1430 16 6 11.0209 -7.9083 -1.8136 17 1 10.3129 -8.2612 -2.5489 18 6 12.1700 -8.6407 -1.5491 19 7 13.0330 -8.2105 -0.6534 20 14 12.4916 -10.2370 -2.4645 21 1 13.2580 -9.9513 -3.7038 22 1 13.2747 -11.1549 -1.5988 23 1 11.1976 -10.8740 -2.8183 24 6 8.5245 -6.0353 -0.2975 25 6 7.0913 -4.0528 -1.3512 26 6 2.1952 -1.1954 -0.0058 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6539 2.1325 0.0007 31 1 4.1137 2.1474 -0.0009 32 1 5.3613 0.0274 -0.0005 33 1 6.1648 -1.6243 -0.0022 34 1 5.8401 -4.5608 0.4030 35 1 7.9295 -4.0650 1.5830 36 1 8.2569 -2.6174 0.5343 37 1 9.7973 -3.8343 -1.9851 38 1 10.4676 -4.2476 -0.3472 39 1 9.1634 -6.1621 -2.4132 40 1 11.4215 -6.4207 -0.4829 41 1 13.8363 -8.7221 -0.4688 42 1 8.9479 -6.2585 0.6817 43 1 7.6630 -6.6580 -0.5389 44 1 7.3034 -3.1705 -1.9551 45 1 6.5906 -4.8417 -1.9125 46 1 1.6551 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963525564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:04 Heat of formation + Delta-G solvation = 35.700296 kcal Electronic energy + Delta-G solvation = -24668.198940 eV Core-core repulsion = 21137.857442 eV Total energy + Delta-G solvation = -3530.341498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77863 -39.92173 -38.52194 -35.88234 -33.95260 -33.16213 -32.11579 -31.31306 -29.49836 -27.33411 -25.76934 -25.18670 -24.94880 -23.86419 -22.22147 -22.05854 -20.46816 -20.03812 -18.01265 -17.61020 -17.03071 -16.67770 -16.25986 -15.42383 -15.29906 -15.05068 -14.89432 -14.65761 -14.17849 -14.04198 -13.97631 -13.54439 -13.37378 -12.82868 -12.65912 -12.62559 -12.53256 -12.30183 -12.02406 -11.88219 -11.61744 -11.47882 -11.27207 -11.17785 -10.84620 -10.74237 -10.32580 -10.09682 -9.97305 -9.78271 -9.67446 -9.40695 -9.35969 -9.17278 -9.03016 -8.83878 -6.93196 -5.76136 -3.04393 0.49377 0.93610 2.60421 2.97314 3.44603 3.49994 3.50827 3.51626 4.32100 4.34139 4.44107 4.58047 4.59247 4.67747 4.71678 4.80786 4.85689 4.89810 4.92637 5.17094 5.19473 5.32293 5.40396 5.46601 5.54335 5.57042 5.65865 5.71167 5.81732 5.91022 5.92228 5.95210 5.96386 5.99291 6.10025 6.12134 6.21311 6.26787 6.38000 6.43442 6.46683 6.53536 6.67110 6.95335 7.15826 7.34114 7.72252 8.03029 8.42815 9.53841 10.12628 10.47042 11.46353 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041216 B = 0.001950 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.183752 B =14354.377370 C =14725.637162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.129 4.129 7 C 0.556 3.444 8 O -0.536 6.536 9 N -0.713 5.713 10 C 0.123 3.877 11 C -0.131 4.131 12 C -0.101 4.101 13 C -0.135 4.135 14 C 0.168 3.832 15 N -0.713 5.713 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.142 4.142 25 C -0.125 4.125 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.398 0.602 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.802 22.656 2.680 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.116 4.116 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.132 4.132 7 C 0.343 3.657 8 O -0.414 6.414 9 N -0.364 5.364 10 C 0.019 3.981 11 C -0.169 4.169 12 C -0.102 4.102 13 C -0.175 4.175 14 C 0.056 3.944 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.183 4.183 25 C -0.163 4.163 26 C -0.080 4.080 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.188 21.688 2.569 31.133 hybrid contribution 0.781 -0.265 -0.208 0.850 sum -21.407 21.423 2.361 30.377 Atomic orbital electron populations 1.20814 0.90613 1.03106 1.02666 1.19939 0.96549 0.92791 1.00247 1.21262 0.94345 0.97703 0.98322 1.21097 0.94282 0.98051 1.00702 1.21313 0.99819 0.91838 0.98194 1.20013 0.94443 0.93036 1.05685 1.18330 0.82390 0.88759 0.76190 1.90778 1.68493 1.32526 1.49614 1.45997 1.05892 1.09841 1.74640 1.22663 0.91210 0.86424 0.97819 1.23184 0.94079 1.00321 0.99292 1.22091 0.94973 0.97137 0.96027 1.23268 0.94515 0.99629 1.00054 1.21537 0.88030 0.89222 0.95569 1.42415 1.21305 1.24053 1.47338 1.19322 1.03715 0.98071 1.16204 0.91102 1.24759 0.97346 0.99325 0.99583 1.69662 1.12427 1.39989 1.36085 0.86189 0.77746 0.83361 0.78911 1.21741 1.21789 1.20731 1.23604 1.00782 0.91502 1.02400 1.23147 0.95733 1.01176 0.96257 1.21192 0.92698 0.98464 0.95695 0.90893 0.91177 0.91337 0.85618 0.85318 0.85610 0.76610 0.86684 0.90732 0.89947 0.92279 0.90205 0.90796 0.78130 0.93524 0.90110 0.92503 0.89901 0.90848 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.10 -0.71 5.87 -104.68 -0.61 -1.33 16 3 C -0.10 -0.63 9.69 -39.49 -0.38 -1.01 16 4 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 5 C -0.09 -0.69 9.54 -39.18 -0.37 -1.07 16 6 C -0.13 -1.29 5.87 -104.97 -0.62 -1.90 16 7 C 0.56 6.85 7.77 -12.32 -0.10 6.76 16 8 O -0.54 -8.64 15.95 5.33 0.08 -8.56 16 9 N -0.71 -7.36 5.31 -53.79 -0.29 -7.64 16 10 C 0.12 1.48 4.24 -66.95 -0.28 1.19 16 11 C -0.13 -1.51 7.59 -26.28 -0.20 -1.71 16 12 C -0.10 -1.42 1.11 -154.71 -0.17 -1.59 16 13 C -0.14 -2.19 7.59 -26.28 -0.20 -2.39 16 14 C 0.17 3.35 4.48 -66.95 -0.30 3.05 16 15 N -0.71 -17.99 5.40 -52.47 -0.28 -18.28 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.14 -2.47 7.64 -26.28 -0.20 -2.67 16 25 C -0.12 -1.57 7.64 -26.28 -0.20 -1.77 16 26 C -0.06 -0.59 9.24 -39.19 -0.36 -0.95 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.13 0.65 6.41 -52.48 -0.34 0.32 16 33 H 0.40 2.97 6.76 -40.82 -0.28 2.69 16 34 H 0.12 1.61 7.47 -51.92 -0.39 1.22 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.81 8.12 -51.92 -0.42 0.39 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 39 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 40 H 0.38 10.25 7.92 -40.82 -0.32 9.93 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.14 1.36 7.65 -52.48 -0.40 0.96 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -32.94 380.34 -10.52 -43.46 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.18 Total: 9.59 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.29 Total: -14.26 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.16 Total: -53.49 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.94 -10.52 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963525564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.157 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds