Wall clock time and date at job start Tue Mar 31 2020 10:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38383 * 119.93140 * 2 1 4 4 C 1.38331 * 120.29425 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14453 * 359.97438 * 4 3 2 6 6 C 1.39556 * 119.85039 * 0.02562 * 5 4 3 7 7 C 1.47850 * 120.14204 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00167 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99798 * 359.97438 * 7 6 5 10 10 C 1.46498 * 119.99983 * 180.02562 * 9 7 6 11 11 C 1.53954 * 113.58380 * 205.00420 * 10 9 7 12 12 C 1.52905 * 86.78040 * 220.66109 * 11 10 9 13 13 C 1.52917 * 121.13340 * 150.61456 * 12 11 10 14 14 C 1.53957 * 86.77928 * 150.61497 * 13 12 11 15 15 N 1.46499 * 113.58030 * 220.66444 * 14 13 12 16 16 C 1.36934 * 119.99782 * 205.00320 * 15 14 13 17 17 H 1.07999 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99964 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99878 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00317 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47337 * 89.99817 * 20 18 16 22 22 H 1.48495 * 109.47308 * 210.00239 * 20 18 16 23 23 H 1.48505 * 109.46714 * 329.99624 * 20 18 16 24 24 C 1.52909 * 121.13655 * 259.17353 * 12 11 10 25 25 C 1.52910 * 88.04631 * 24.89586 * 12 11 10 26 26 C 1.37938 * 119.92603 * 180.28008 * 2 1 3 27 27 H 1.09003 * 109.47080 * 89.99694 * 1 2 3 28 28 H 1.08997 * 109.47208 * 209.99810 * 1 2 3 29 29 H 1.08997 * 109.46829 * 330.00223 * 1 2 3 30 30 H 1.08003 * 119.84964 * 0.04445 * 3 2 1 31 31 H 1.07998 * 119.92879 * 179.97438 * 4 3 2 32 32 H 1.08006 * 120.07361 * 180.02562 * 5 4 3 33 33 H 0.97003 * 120.00247 * 0.02562 * 9 7 6 34 34 H 1.09009 * 112.87577 * 336.14188 * 10 9 7 35 35 H 1.08990 * 113.66623 * 106.18266 * 11 10 9 36 36 H 1.09008 * 113.65560 * 335.13415 * 11 10 9 37 37 H 1.08997 * 113.66031 * 265.08631 * 13 12 11 38 38 H 1.09002 * 113.66187 * 36.15037 * 13 12 11 39 39 H 1.09001 * 113.57949 * 89.86751 * 14 13 12 40 40 H 0.96996 * 119.99947 * 24.99948 * 15 14 13 41 41 H 0.97005 * 120.00007 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.66026 * 323.85782 * 24 12 11 43 43 H 1.08998 * 113.66179 * 94.82069 * 24 12 11 44 44 H 1.09006 * 113.66074 * 89.56978 * 25 12 11 45 45 H 1.08994 * 113.66448 * 220.62942 * 25 12 11 46 46 H 1.08007 * 120.07283 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2813 0.0192 -0.0005 6 6 3.5910 -1.1937 -0.0005 7 6 4.3351 -2.4713 -0.0011 8 8 3.7314 -3.5262 -0.0016 9 7 5.6829 -2.4662 -0.0022 10 6 6.4202 -3.7321 -0.0033 11 6 7.8356 -3.6211 0.5920 12 6 8.2905 -4.5437 -0.5393 13 6 9.7107 -4.4654 -1.1007 14 6 9.5730 -5.9647 -1.4226 15 7 10.7855 -6.7379 -1.1430 16 6 11.0209 -7.9083 -1.8136 17 1 10.3129 -8.2612 -2.5489 18 6 12.1700 -8.6407 -1.5491 19 7 13.0330 -8.2105 -0.6534 20 14 12.4916 -10.2370 -2.4645 21 1 13.2580 -9.9513 -3.7038 22 1 13.2747 -11.1549 -1.5988 23 1 11.1976 -10.8740 -2.8183 24 6 8.5245 -6.0353 -0.2975 25 6 7.0913 -4.0528 -1.3512 26 6 2.1952 -1.1954 -0.0058 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6539 2.1325 0.0007 31 1 4.1137 2.1474 -0.0009 32 1 5.3613 0.0274 -0.0005 33 1 6.1648 -1.6243 -0.0022 34 1 5.8401 -4.5608 0.4030 35 1 7.9295 -4.0650 1.5830 36 1 8.2569 -2.6174 0.5343 37 1 9.7973 -3.8343 -1.9851 38 1 10.4676 -4.2476 -0.3472 39 1 9.1634 -6.1621 -2.4132 40 1 11.4215 -6.4207 -0.4829 41 1 13.8363 -8.7221 -0.4688 42 1 8.9479 -6.2585 0.6817 43 1 7.6630 -6.6580 -0.5389 44 1 7.3034 -3.1705 -1.9551 45 1 6.5906 -4.8417 -1.9125 46 1 1.6551 -2.1308 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963525564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:03 Heat of formation + Delta-G solvation = 16.065173 kcal Electronic energy + Delta-G solvation = -24669.050383 eV Core-core repulsion = 21137.857442 eV Total energy + Delta-G solvation = -3531.192941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79478 -40.84759 -39.35348 -37.25223 -35.35042 -34.23371 -33.19298 -32.05674 -31.28840 -27.82764 -26.78466 -26.58168 -26.29065 -25.34058 -23.22591 -22.77519 -21.51488 -21.26090 -19.43618 -18.73466 -18.46424 -17.57810 -16.95396 -16.88273 -16.20139 -16.08808 -15.96825 -15.72604 -15.64625 -15.17011 -14.78873 -14.57507 -14.45103 -14.02141 -13.78468 -13.65324 -13.20833 -13.08698 -13.04952 -12.99139 -12.89776 -12.83790 -12.54551 -12.38788 -12.34500 -12.15210 -12.00221 -11.84827 -11.32003 -11.08503 -11.02861 -10.85385 -10.70854 -10.16851 -9.87124 -9.66363 -8.97374 -7.95076 -5.22841 -0.14498 0.38990 1.46502 1.47943 1.56453 1.81598 2.11162 2.56088 2.86381 3.36087 3.48103 3.53755 3.61241 3.71547 3.82380 3.85484 3.97112 3.99265 4.17627 4.28227 4.32811 4.37815 4.40066 4.46381 4.61500 4.71803 4.78378 4.81359 4.82068 4.89595 4.93810 4.99016 5.01077 5.04608 5.08177 5.11530 5.24153 5.25771 5.33097 5.43586 5.44068 5.54474 5.58557 5.61247 5.70251 5.96453 6.27769 6.51528 7.16546 7.33461 8.11564 8.34568 9.28134 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041216 B = 0.001950 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.183752 B =14354.377370 C =14725.637162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.102 4.102 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.091 4.091 6 C -0.151 4.151 7 C 0.552 3.448 8 O -0.587 6.587 9 N -0.698 5.698 10 C 0.127 3.873 11 C -0.115 4.115 12 C -0.089 4.089 13 C -0.121 4.121 14 C 0.146 3.854 15 N -0.728 5.728 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.272 1.272 24 C -0.140 4.140 25 C -0.119 4.119 26 C -0.085 4.085 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.562 25.859 2.275 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.113 4.113 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.154 4.154 7 C 0.342 3.658 8 O -0.468 6.468 9 N -0.349 5.349 10 C 0.022 3.978 11 C -0.153 4.153 12 C -0.090 4.090 13 C -0.159 4.159 14 C 0.036 3.964 15 N -0.365 5.365 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.180 4.180 25 C -0.157 4.157 26 C -0.104 4.104 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.168 0.832 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.124 0.876 45 H 0.078 0.922 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.980 24.946 2.147 33.986 hybrid contribution 0.915 -1.176 -0.094 1.493 sum -22.065 23.770 2.053 32.498 Atomic orbital electron populations 1.20861 0.89293 1.03774 1.03249 1.20195 0.97680 0.92503 0.99857 1.21668 0.94826 0.98200 0.96579 1.21509 0.94432 0.98791 0.99207 1.21588 1.01080 0.91093 0.97191 1.19931 0.94501 0.92831 1.08168 1.18786 0.82816 0.89089 0.75145 1.90748 1.69508 1.34447 1.52100 1.45800 1.05336 1.10007 1.73728 1.22394 0.91344 0.86651 0.97453 1.23158 0.92991 1.01095 0.98085 1.21877 0.94313 0.94970 0.97846 1.23097 0.95674 0.96483 1.00682 1.21918 0.86914 0.91474 0.96053 1.42585 1.22796 1.24047 1.47101 1.19699 1.03422 0.98874 1.15669 0.90861 1.25553 0.97564 1.02762 1.00995 1.69811 1.12881 1.41331 1.37935 0.85160 0.77709 0.79486 0.77540 1.21289 1.22172 1.19701 1.23409 0.99550 0.94548 1.00522 1.23178 0.94518 1.01569 0.96485 1.21220 0.93014 0.98769 0.97390 0.90295 0.91698 0.89510 0.82824 0.82238 0.83226 0.74543 0.89147 0.90837 0.86842 0.90596 0.90536 0.91351 0.79376 0.94040 0.91474 0.92958 0.87618 0.92186 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.10 -1.40 5.87 -19.90 -0.12 -1.52 16 3 C -0.09 -0.92 9.69 22.33 0.22 -0.70 16 4 C -0.12 -1.09 10.03 22.23 0.22 -0.86 16 5 C -0.09 -1.10 9.54 22.53 0.21 -0.89 16 6 C -0.15 -2.93 5.87 -20.09 -0.12 -3.04 16 7 C 0.55 13.59 7.77 86.79 0.67 14.27 16 8 O -0.59 -19.84 15.95 -3.86 -0.06 -19.90 16 9 N -0.70 -13.19 5.31 -442.37 -2.35 -15.54 16 10 C 0.13 2.89 4.24 45.63 0.19 3.08 16 11 C -0.12 -2.39 7.59 30.88 0.23 -2.16 16 12 C -0.09 -2.37 1.11 -52.31 -0.06 -2.42 16 13 C -0.12 -3.72 7.59 30.89 0.23 -3.49 16 14 C 0.15 5.83 4.48 45.63 0.20 6.04 16 15 N -0.73 -37.40 5.40 -319.92 -1.73 -39.13 16 16 C -0.24 -13.90 9.97 84.03 0.84 -13.07 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 19 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 20 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 C -0.14 -4.91 7.64 30.88 0.24 -4.67 16 25 C -0.12 -2.80 7.64 30.88 0.24 -2.56 16 26 C -0.08 -1.66 9.24 22.52 0.21 -1.45 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.15 0.95 6.41 -2.91 -0.02 0.94 16 33 H 0.42 4.82 6.76 -92.71 -0.63 4.19 16 34 H 0.09 2.58 7.47 -2.38 -0.02 2.56 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.73 8.12 -2.38 -0.02 1.71 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 39 H 0.07 2.78 8.10 -2.39 -0.02 2.76 16 40 H 0.37 20.47 7.92 -92.71 -0.73 19.73 16 41 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 46 H 0.12 2.59 7.65 -2.91 -0.02 2.57 16 Total: -1.00 -74.22 380.34 2.40 -71.82 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.37 Total: 31.22 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.60 Total: -17.79 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -3.79 Total: -114.34 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.22 2.40 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963525564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.885 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds