Wall clock time and date at job start Tue Mar 31 2020 10:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.85591 * 2 1 4 4 C 1.37957 * 120.14198 * 179.97438 * 3 2 1 5 5 C 1.39574 * 119.85596 * 0.02818 * 4 3 2 6 6 C 1.47846 * 120.14213 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99557 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72375 * 8 6 5 10 10 C 1.53957 * 113.57957 * 252.99774 * 9 8 6 11 11 C 1.52909 * 86.78261 * 220.66471 * 10 9 8 12 12 C 1.52910 * 121.13874 * 150.61652 * 11 10 9 13 13 C 1.53956 * 86.77947 * 100.82130 * 12 11 10 14 14 N 1.46504 * 113.57528 * 139.34258 * 13 12 11 15 15 C 1.36931 * 120.00484 * 107.27940 * 14 13 12 16 16 H 1.08001 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00293 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47244 * 90.00073 * 19 17 15 21 21 H 1.48498 * 109.47224 * 210.00102 * 19 17 15 22 22 H 1.48499 * 109.47482 * 330.00033 * 19 17 15 23 23 C 1.52912 * 121.13664 * 259.18100 * 11 10 9 24 24 C 1.52912 * 88.04175 * 24.89887 * 11 10 9 25 25 C 1.39575 * 119.71160 * 0.24914 * 5 4 3 26 26 C 1.37955 * 119.84970 * 359.46993 * 25 5 4 27 27 H 1.08997 * 109.47585 * 89.99267 * 1 2 3 28 28 H 1.08996 * 109.47572 * 209.99936 * 1 2 3 29 29 H 1.09006 * 109.47105 * 329.99826 * 1 2 3 30 30 H 1.07995 * 119.92728 * 359.97438 * 3 2 1 31 31 H 1.08008 * 120.06795 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.08997 * 112.82421 * 24.19022 * 9 8 6 34 34 H 1.08991 * 113.66598 * 335.13724 * 10 9 8 35 35 H 1.09002 * 113.66075 * 106.19555 * 10 9 8 36 36 H 1.08993 * 113.66359 * 215.29369 * 12 11 10 37 37 H 1.08999 * 113.65667 * 346.35285 * 12 11 10 38 38 H 1.09001 * 113.57868 * 270.12472 * 13 12 11 39 39 H 0.96998 * 119.99287 * 287.27140 * 14 13 12 40 40 H 0.97006 * 119.99449 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.66198 * 13.65107 * 23 11 10 42 42 H 1.09000 * 113.66352 * 144.61666 * 23 11 10 43 43 H 1.09006 * 113.66019 * 220.63175 * 24 11 10 44 44 H 1.08998 * 113.74643 * 89.58592 * 24 11 10 45 45 H 1.08001 * 120.07522 * 179.73028 * 25 5 4 46 46 H 1.08007 * 119.92738 * 180.27729 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2762 -0.0002 0.0005 6 6 5.7547 -0.0002 0.0005 7 8 6.3624 1.0525 0.0001 8 7 6.4284 -1.1674 0.0009 9 6 7.8934 -1.1675 -0.0052 10 6 8.5036 -1.5839 -1.3559 11 6 9.5340 -2.3745 -0.5489 12 6 10.1792 -3.6402 -1.1144 13 6 11.4043 -2.7662 -1.4391 14 7 12.6836 -3.4255 -1.1650 15 6 13.4671 -3.8577 -2.2015 16 1 13.1418 -3.7130 -3.2211 17 6 14.6795 -4.4819 -1.9418 18 7 15.4322 -4.8977 -2.9382 19 14 15.2424 -4.7316 -0.1783 20 1 14.7458 -6.0396 0.3194 21 1 16.7263 -4.7128 -0.1250 22 1 14.7028 -3.6409 0.6728 23 6 10.9416 -1.8264 -0.3110 24 6 8.5117 -2.4475 0.5859 25 6 3.5752 -1.2071 -0.0054 26 6 2.1957 -1.2000 0.0000 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6523 2.1332 -0.0004 31 1 4.1118 2.1443 0.0010 32 1 5.9435 -2.0075 0.0009 33 1 8.3180 -0.2499 0.4021 34 1 7.8460 -2.2101 -1.9586 35 1 8.9315 -0.7532 -1.9173 36 1 10.3743 -4.4051 -0.3629 37 1 9.6743 -4.0312 -1.9978 38 1 11.3655 -2.3115 -2.4290 39 1 12.9756 -3.5557 -0.2492 40 1 16.2796 -5.3336 -2.7566 41 1 11.0458 -0.7686 -0.5524 42 1 11.3504 -2.0803 0.6671 43 1 8.9460 -2.3067 1.5757 44 1 7.8556 -3.3161 0.5304 45 1 4.1116 -2.1445 -0.0099 46 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965886617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:08 Heat of formation + Delta-G solvation = 39.732773 kcal Electronic energy + Delta-G solvation = -24674.083087 eV Core-core repulsion = 21143.916450 eV Total energy + Delta-G solvation = -3530.166637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83174 -39.98493 -38.59518 -36.01507 -33.94655 -33.22149 -32.14368 -31.28896 -30.13406 -27.86207 -25.84095 -25.35274 -24.33090 -23.19886 -23.09540 -21.79811 -20.57820 -20.18679 -18.39664 -17.84686 -17.25513 -16.65359 -15.73585 -15.47656 -15.42782 -15.20554 -14.95026 -14.81461 -14.18748 -14.06848 -14.02216 -13.85923 -13.46660 -12.73689 -12.72425 -12.65257 -12.46666 -12.40721 -12.22852 -12.03421 -11.81983 -11.66340 -11.45435 -11.12568 -11.05883 -10.75084 -10.31962 -10.21229 -9.99735 -9.86709 -9.67074 -9.45261 -9.43146 -9.25561 -9.01918 -8.87390 -7.24725 -5.77015 -3.12094 0.45080 0.94265 2.56615 2.94759 3.37606 3.40480 3.45441 3.48871 4.26055 4.30448 4.44255 4.51647 4.56599 4.58961 4.59947 4.70235 4.81306 4.83367 4.91402 5.09202 5.19190 5.26405 5.27070 5.38829 5.48156 5.53837 5.58190 5.62042 5.66661 5.77871 5.81957 5.85125 5.86622 5.95276 6.01767 6.08038 6.09734 6.13274 6.24561 6.31905 6.42541 6.48093 6.56662 6.80515 7.01441 7.30263 7.99948 8.00293 8.42992 9.21116 9.93852 10.14120 11.41339 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041276 B = 0.001983 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.205618 B =14116.470996 C =14259.610129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.140 4.140 6 C 0.557 3.443 7 O -0.538 6.538 8 N -0.714 5.714 9 C 0.123 3.877 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.148 4.148 13 C 0.174 3.826 14 N -0.738 5.738 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.082 4.082 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.399 0.601 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.587 8.621 8.426 33.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.143 4.143 6 C 0.345 3.655 7 O -0.415 6.415 8 N -0.365 5.365 9 C 0.018 3.982 10 C -0.163 4.163 11 C -0.103 4.103 12 C -0.189 4.189 13 C 0.063 3.937 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.581 5.581 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.171 4.171 24 C -0.168 4.168 25 C -0.101 4.101 26 C -0.147 4.147 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.234 0.766 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.144 0.856 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -30.982 9.316 8.188 33.373 hybrid contribution 0.265 -0.791 1.219 1.477 sum -30.718 8.526 9.408 33.238 Atomic orbital electron populations 1.20874 0.90825 1.03158 1.02739 1.20177 0.96426 0.93186 0.96545 1.21060 0.93859 0.97910 1.01958 1.21301 0.93850 0.97866 0.94448 1.19999 0.92987 0.94525 1.06802 1.18332 0.87052 0.84079 0.76083 1.90777 1.69857 1.31183 1.49722 1.45988 1.07543 1.08181 1.74743 1.22669 0.77863 0.99827 0.97793 1.23149 0.97067 0.99780 0.96254 1.22063 0.92903 0.99058 0.96268 1.23604 0.99307 0.95828 1.00153 1.21529 0.84509 0.91392 0.96282 1.42766 1.19753 1.69991 1.05232 1.19153 0.99003 1.30814 0.88667 0.89154 1.24693 0.97050 1.00726 0.96733 1.69707 1.13571 1.45321 1.29525 0.86544 0.77971 0.77994 0.86003 1.21109 1.21734 1.20307 1.23237 0.93145 0.99891 1.00816 1.23182 0.98007 0.96611 0.99043 1.21307 0.94548 0.97009 0.97196 1.20997 0.93848 0.97903 1.01973 0.90689 0.91210 0.91211 0.85323 0.84571 0.76598 0.86700 0.89712 0.90745 0.90387 0.92240 0.89936 0.80515 0.93077 0.91681 0.90245 0.90842 0.89801 0.85569 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.00 36.00 0.36 -0.10 16 2 C -0.06 -0.40 5.89 -104.53 -0.62 -1.02 16 3 C -0.13 -0.93 9.68 -39.64 -0.38 -1.31 16 4 C -0.06 -0.51 9.60 -39.19 -0.38 -0.89 16 5 C -0.14 -1.35 5.87 -104.97 -0.62 -1.97 16 6 C 0.56 6.63 7.77 -12.33 -0.10 6.53 16 7 O -0.54 -8.40 15.95 5.32 0.08 -8.31 16 8 N -0.71 -7.03 5.31 -53.79 -0.29 -7.32 16 9 C 0.12 1.39 4.24 -66.95 -0.28 1.10 16 10 C -0.12 -1.49 7.64 -26.28 -0.20 -1.69 16 11 C -0.10 -1.34 1.11 -154.71 -0.17 -1.51 16 12 C -0.15 -2.37 7.64 -26.28 -0.20 -2.57 16 13 C 0.17 3.31 4.48 -66.95 -0.30 3.01 16 14 N -0.74 -17.44 5.20 -52.47 -0.27 -17.71 16 15 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 18 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 19 Si 0.88 22.16 27.73 -169.99 -4.71 17.44 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 23 C -0.13 -2.05 7.59 -26.28 -0.20 -2.24 16 24 C -0.13 -1.40 7.59 -26.28 -0.20 -1.60 16 25 C -0.08 -0.59 9.54 -39.19 -0.37 -0.97 16 26 C -0.13 -0.82 9.68 -39.64 -0.38 -1.20 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.21 8.08 -51.93 -0.42 -0.20 16 29 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.14 1.28 7.65 -52.48 -0.40 0.88 16 32 H 0.40 2.83 6.76 -40.82 -0.28 2.55 16 33 H 0.12 1.50 7.47 -51.93 -0.39 1.11 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 39 H 0.36 8.39 5.79 -40.82 -0.24 8.16 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.13 0.63 6.41 -52.49 -0.34 0.29 16 46 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -33.85 377.22 -10.16 -44.01 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.14 Total: 8.41 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -4.29 Total: -13.57 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.22 Total: -53.67 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.85 -10.16 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965886617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.742 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds