Wall clock time and date at job start Tue Mar 31 2020 10:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.85591 * 2 1 4 4 C 1.37957 * 120.14198 * 179.97438 * 3 2 1 5 5 C 1.39574 * 119.85596 * 0.02818 * 4 3 2 6 6 C 1.47846 * 120.14213 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99557 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72375 * 8 6 5 10 10 C 1.53957 * 113.57957 * 252.99774 * 9 8 6 11 11 C 1.52909 * 86.78261 * 220.66471 * 10 9 8 12 12 C 1.52910 * 121.13874 * 150.61652 * 11 10 9 13 13 C 1.53956 * 86.77947 * 100.82130 * 12 11 10 14 14 N 1.46504 * 113.57528 * 139.34258 * 13 12 11 15 15 C 1.36931 * 120.00484 * 107.27940 * 14 13 12 16 16 H 1.08001 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00293 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47244 * 90.00073 * 19 17 15 21 21 H 1.48498 * 109.47224 * 210.00102 * 19 17 15 22 22 H 1.48499 * 109.47482 * 330.00033 * 19 17 15 23 23 C 1.52912 * 121.13664 * 259.18100 * 11 10 9 24 24 C 1.52912 * 88.04175 * 24.89887 * 11 10 9 25 25 C 1.39575 * 119.71160 * 0.24914 * 5 4 3 26 26 C 1.37955 * 119.84970 * 359.46993 * 25 5 4 27 27 H 1.08997 * 109.47585 * 89.99267 * 1 2 3 28 28 H 1.08996 * 109.47572 * 209.99936 * 1 2 3 29 29 H 1.09006 * 109.47105 * 329.99826 * 1 2 3 30 30 H 1.07995 * 119.92728 * 359.97438 * 3 2 1 31 31 H 1.08008 * 120.06795 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.08997 * 112.82421 * 24.19022 * 9 8 6 34 34 H 1.08991 * 113.66598 * 335.13724 * 10 9 8 35 35 H 1.09002 * 113.66075 * 106.19555 * 10 9 8 36 36 H 1.08993 * 113.66359 * 215.29369 * 12 11 10 37 37 H 1.08999 * 113.65667 * 346.35285 * 12 11 10 38 38 H 1.09001 * 113.57868 * 270.12472 * 13 12 11 39 39 H 0.96998 * 119.99287 * 287.27140 * 14 13 12 40 40 H 0.97006 * 119.99449 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.66198 * 13.65107 * 23 11 10 42 42 H 1.09000 * 113.66352 * 144.61666 * 23 11 10 43 43 H 1.09006 * 113.66019 * 220.63175 * 24 11 10 44 44 H 1.08998 * 113.74643 * 89.58592 * 24 11 10 45 45 H 1.08001 * 120.07522 * 179.73028 * 25 5 4 46 46 H 1.08007 * 119.92738 * 180.27729 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2762 -0.0002 0.0005 6 6 5.7547 -0.0002 0.0005 7 8 6.3624 1.0525 0.0001 8 7 6.4284 -1.1674 0.0009 9 6 7.8934 -1.1675 -0.0052 10 6 8.5036 -1.5839 -1.3559 11 6 9.5340 -2.3745 -0.5489 12 6 10.1792 -3.6402 -1.1144 13 6 11.4043 -2.7662 -1.4391 14 7 12.6836 -3.4255 -1.1650 15 6 13.4671 -3.8577 -2.2015 16 1 13.1418 -3.7130 -3.2211 17 6 14.6795 -4.4819 -1.9418 18 7 15.4322 -4.8977 -2.9382 19 14 15.2424 -4.7316 -0.1783 20 1 14.7458 -6.0396 0.3194 21 1 16.7263 -4.7128 -0.1250 22 1 14.7028 -3.6409 0.6728 23 6 10.9416 -1.8264 -0.3110 24 6 8.5117 -2.4475 0.5859 25 6 3.5752 -1.2071 -0.0054 26 6 2.1957 -1.2000 0.0000 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6523 2.1332 -0.0004 31 1 4.1118 2.1443 0.0010 32 1 5.9435 -2.0075 0.0009 33 1 8.3180 -0.2499 0.4021 34 1 7.8460 -2.2101 -1.9586 35 1 8.9315 -0.7532 -1.9173 36 1 10.3743 -4.4051 -0.3629 37 1 9.6743 -4.0312 -1.9978 38 1 11.3655 -2.3115 -2.4290 39 1 12.9756 -3.5557 -0.2492 40 1 16.2796 -5.3336 -2.7566 41 1 11.0458 -0.7686 -0.5524 42 1 11.3504 -2.0803 0.6671 43 1 8.9460 -2.3067 1.5757 44 1 7.8556 -3.3161 0.5304 45 1 4.1116 -2.1445 -0.0099 46 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965886617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:07 Heat of formation + Delta-G solvation = 18.881187 kcal Electronic energy + Delta-G solvation = -24674.987279 eV Core-core repulsion = 21143.916450 eV Total energy + Delta-G solvation = -3531.070830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80439 -40.85498 -39.38377 -37.34499 -35.36019 -34.20521 -33.33202 -32.10839 -31.70127 -28.38947 -26.78646 -26.66650 -25.93629 -24.35410 -23.63451 -22.81991 -21.59846 -21.35416 -19.85700 -19.01592 -18.57005 -17.53919 -16.96011 -16.35636 -16.20100 -16.16938 -15.95980 -15.81432 -15.70972 -15.16138 -14.67883 -14.62067 -14.51855 -14.34663 -13.74022 -13.65835 -13.56942 -13.41644 -13.02571 -12.99163 -12.90414 -12.84254 -12.55405 -12.40099 -12.21130 -12.02077 -11.94124 -11.86365 -11.50379 -11.07790 -11.04367 -10.84900 -10.74579 -10.11954 -9.96833 -9.63461 -9.26171 -8.02368 -5.35050 -0.16647 0.40814 1.37806 1.41486 1.48876 1.80621 2.13300 2.48721 2.85841 3.27558 3.44652 3.47913 3.61321 3.69697 3.80126 3.84487 3.88086 3.99621 4.03694 4.08174 4.29139 4.37783 4.42711 4.48409 4.58246 4.74889 4.78726 4.80413 4.81792 4.86745 4.93052 4.96808 5.03417 5.07111 5.08086 5.11057 5.23770 5.25905 5.31931 5.39460 5.46866 5.58895 5.60361 5.62210 5.78584 5.95145 6.23156 6.52072 7.08292 7.17313 7.85927 8.05557 9.19322 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.041276 B = 0.001983 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.205618 B =14116.470996 C =14259.610129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.075 4.075 5 C -0.164 4.164 6 C 0.554 3.446 7 O -0.586 6.586 8 N -0.700 5.700 9 C 0.127 3.873 10 C -0.123 4.123 11 C -0.090 4.090 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.742 5.742 15 C -0.234 4.234 16 H 0.054 0.946 17 C -0.067 4.067 18 N -0.985 5.985 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.297 1.297 22 H -0.252 1.252 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.078 4.078 26 C -0.132 4.132 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.120 0.880 32 H 0.415 0.585 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.150 0.850 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.790 7.656 10.742 37.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.094 4.094 5 C -0.167 4.167 6 C 0.343 3.657 7 O -0.468 6.468 8 N -0.351 5.351 9 C 0.022 3.978 10 C -0.162 4.162 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.039 3.961 14 N -0.384 5.384 15 C -0.365 4.365 16 H 0.072 0.928 17 C -0.258 4.258 18 N -0.636 5.636 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.177 1.177 23 C -0.162 4.162 24 C -0.151 4.151 25 C -0.097 4.097 26 C -0.150 4.150 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.253 0.747 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -34.268 8.349 10.526 36.808 hybrid contribution 1.124 -0.438 0.377 1.264 sum -33.145 7.911 10.903 35.777 Atomic orbital electron populations 1.20940 0.88839 1.04202 1.03543 1.20566 0.97930 0.92865 0.94854 1.21276 0.93056 0.99316 1.01716 1.21344 0.94928 0.97416 0.95737 1.19931 0.91644 0.95799 1.09291 1.18748 0.88092 0.83746 0.75094 1.90747 1.70954 1.32896 1.52173 1.45817 1.06940 1.08503 1.73800 1.22439 0.78701 0.99503 0.97184 1.23196 0.96927 0.99389 0.96688 1.21876 0.92495 0.96864 0.97905 1.23408 0.97477 0.96478 1.00390 1.21902 0.83781 0.93373 0.97070 1.42746 1.20881 1.70579 1.04174 1.19117 0.99340 1.29570 0.88501 0.92760 1.25546 0.97385 1.01305 1.01582 1.69898 1.14199 1.47214 1.32257 0.85364 0.76861 0.78812 0.80471 1.20229 1.22395 1.17650 1.23129 0.94440 0.99216 0.99414 1.23142 0.96846 0.96925 0.98188 1.21563 0.95179 0.96852 0.96103 1.21374 0.93608 0.99040 1.00933 0.89845 0.89928 0.90501 0.83712 0.86151 0.74667 0.88621 0.88264 0.92104 0.90323 0.92070 0.91699 0.79985 0.93401 0.91475 0.89542 0.90048 0.87245 0.83214 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.00 71.24 0.71 0.17 16 2 C -0.06 -0.63 5.89 -19.81 -0.12 -0.75 16 3 C -0.14 -1.78 9.68 22.23 0.22 -1.56 16 4 C -0.08 -1.39 9.60 22.53 0.22 -1.18 16 5 C -0.16 -3.04 5.87 -20.09 -0.12 -3.16 16 6 C 0.55 13.00 7.77 86.79 0.67 13.68 16 7 O -0.59 -18.97 15.95 -3.88 -0.06 -19.03 16 8 N -0.70 -12.44 5.31 -442.38 -2.35 -14.79 16 9 C 0.13 2.63 4.24 45.63 0.19 2.83 16 10 C -0.12 -2.78 7.64 30.89 0.24 -2.54 16 11 C -0.09 -2.19 1.11 -52.31 -0.06 -2.25 16 12 C -0.14 -4.16 7.64 30.89 0.24 -3.93 16 13 C 0.15 5.57 4.48 45.63 0.20 5.78 16 14 N -0.74 -34.89 5.20 -319.92 -1.66 -36.56 16 15 C -0.23 -13.56 10.45 84.03 0.88 -12.69 16 16 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 18 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16 19 Si 0.96 45.84 27.73 68.60 1.90 47.74 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 22 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 23 C -0.12 -3.65 7.59 30.88 0.23 -3.42 16 24 C -0.11 -2.05 7.59 30.89 0.23 -1.81 16 25 C -0.08 -0.94 9.54 22.53 0.21 -0.72 16 26 C -0.13 -1.25 9.68 22.23 0.22 -1.04 16 27 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16 29 H 0.08 0.27 8.08 -2.38 -0.02 0.25 16 30 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.12 2.49 7.65 -2.91 -0.02 2.47 16 32 H 0.41 4.52 6.76 -92.71 -0.63 3.90 16 33 H 0.10 2.44 7.47 -2.39 -0.02 2.42 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 2.64 8.10 -2.39 -0.02 2.62 16 39 H 0.37 16.39 5.79 -92.71 -0.54 15.86 16 40 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 43 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.11 1.50 8.12 -2.39 -0.02 1.48 16 45 H 0.15 0.94 6.41 -2.91 -0.02 0.92 16 46 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -76.76 377.22 2.54 -74.22 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.23 Total: 28.22 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.64 Total: -16.13 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -3.71 Total: -115.02 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -76.76 2.54 -74.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965886617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.101 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds