Wall clock time and date at job start Tue Mar 31 2020 10:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38383 * 119.92936 * 2 1 4 4 C 1.38343 * 120.29702 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.14176 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.07313 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49388 * 3.55300 * 6 5 4 8 8 C 1.52997 * 117.49435 * 294.93069 * 6 5 4 9 9 C 1.39560 * 119.85585 * 0.03983 * 5 4 3 10 10 C 1.47841 * 120.14400 * 179.97438 * 9 5 4 11 11 O 1.21555 * 119.99853 * 311.72688 * 10 9 5 12 12 N 1.34782 * 120.00249 * 131.73274 * 10 9 5 13 13 C 1.47025 * 125.64686 * 4.87098 * 12 10 9 14 14 C 1.54321 * 107.27138 * 181.02362 * 13 12 10 15 15 C 1.55159 * 102.93865 * 22.19501 * 14 13 12 16 16 H 1.09004 * 111.00538 * 82.57330 * 15 14 13 17 17 N 1.46500 * 110.99980 * 206.42029 * 15 14 13 18 18 C 1.36938 * 120.00152 * 273.54563 * 17 15 14 19 19 H 1.07996 * 120.00023 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99822 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47029 * 90.00214 * 22 20 18 24 24 H 1.48501 * 109.47429 * 209.99970 * 22 20 18 25 25 H 1.48497 * 109.47169 * 330.00250 * 22 20 18 26 26 C 1.47418 * 125.65062 * 184.56655 * 12 10 9 27 27 C 1.37940 * 119.93032 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46842 * 270.01646 * 1 2 3 29 29 H 1.08996 * 109.47074 * 30.02341 * 1 2 3 30 30 H 1.09004 * 109.47191 * 150.01995 * 1 2 3 31 31 H 1.08001 * 119.85139 * 359.96459 * 3 2 1 32 32 H 1.08000 * 119.92818 * 180.02562 * 4 3 2 33 33 H 1.08996 * 115.55077 * 149.26074 * 6 5 4 34 34 H 1.08992 * 117.50247 * 359.97438 * 7 6 5 35 35 H 1.09002 * 117.49641 * 145.02536 * 7 6 5 36 36 H 1.09004 * 117.49699 * 214.97470 * 8 6 5 37 37 H 1.08999 * 117.50268 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.88370 * 300.44711 * 13 12 10 39 39 H 1.08996 * 109.87861 * 61.60758 * 13 12 10 40 40 H 1.08995 * 110.71763 * 140.55676 * 14 13 12 41 41 H 1.09001 * 110.72108 * 263.65643 * 14 13 12 42 42 H 0.97002 * 120.00140 * 93.55201 * 17 15 14 43 43 H 0.97005 * 119.99908 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.36911 * 274.74941 * 26 12 10 45 45 H 1.09008 * 110.36797 * 37.06646 * 26 12 10 46 46 H 1.07999 * 120.07434 * 359.74088 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0016 6 6 5.7882 0.0309 0.0028 7 6 6.4841 1.3909 0.0868 8 6 6.4911 0.6078 -1.2277 9 6 3.5911 -1.1936 0.0013 10 6 4.3353 -2.4711 0.0019 11 8 5.2471 -2.6436 -0.7832 12 7 4.0026 -3.4444 0.8728 13 6 2.8642 -3.4099 1.8026 14 6 2.8954 -4.7222 2.6140 15 6 4.3756 -5.1710 2.4920 16 1 5.0012 -4.6570 3.2218 17 7 4.4967 -6.6244 2.6307 18 6 4.6144 -7.1861 3.8740 19 1 4.6175 -6.5577 4.7524 20 6 4.7296 -8.5632 4.0054 21 7 4.7263 -9.3290 2.9350 22 14 4.8894 -9.3295 5.7015 23 1 3.5382 -9.6414 6.2330 24 1 5.6848 -10.5800 5.6069 25 1 5.5720 -8.3764 6.6130 26 6 4.7162 -4.7227 1.0465 27 6 2.1952 -1.1954 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6538 2.1325 -0.0006 32 1 4.1136 2.1476 0.0009 33 1 6.2644 -0.8105 0.5061 34 1 5.8521 2.2772 0.1408 35 1 7.4185 1.4444 0.6457 36 1 7.4300 0.1462 -1.5335 37 1 5.8637 0.9794 -2.0378 38 1 2.9596 -2.5565 2.4739 39 1 1.9310 -3.3419 1.2435 40 1 2.6330 -4.5378 3.6557 41 1 2.2275 -5.4632 2.1748 42 1 4.4936 -7.1889 1.8419 43 1 4.8072 -10.2913 3.0268 44 1 4.3595 -5.4575 0.3248 45 1 5.7909 -4.5749 0.9389 46 1 1.6553 -2.1308 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969451407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:32 Heat of formation + Delta-G solvation = 30.887671 kcal Electronic energy + Delta-G solvation = -25889.120765 eV Core-core repulsion = 22358.570575 eV Total energy + Delta-G solvation = -3530.550190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63019 -39.00531 -37.26704 -36.99248 -34.16221 -32.62103 -31.87449 -30.97130 -29.55059 -27.76455 -27.34212 -24.60567 -23.53983 -23.10015 -22.48575 -22.12908 -20.60240 -20.07883 -18.99725 -17.37572 -17.17012 -16.77246 -15.99091 -15.63131 -15.57357 -14.78839 -14.47667 -14.17419 -14.11069 -13.94616 -13.77601 -13.52973 -13.22353 -12.79709 -12.71598 -12.53093 -12.33260 -12.28935 -12.00116 -11.77191 -11.58209 -11.46032 -11.19285 -11.13882 -10.87029 -10.71684 -10.68202 -10.49748 -10.31948 -10.07279 -9.80629 -9.68035 -9.11076 -8.97354 -8.58460 -8.39599 -7.06670 -5.83943 -3.14683 0.85613 1.11269 2.78255 3.10055 3.39814 3.44654 3.45816 3.47104 3.88939 4.34500 4.45401 4.53093 4.60859 4.64368 4.75942 4.89520 4.96325 5.04239 5.05976 5.17626 5.26643 5.35037 5.36021 5.36911 5.50421 5.54089 5.55093 5.61754 5.71010 5.72461 5.76796 5.88409 5.91784 5.96593 5.97590 6.13108 6.14324 6.22685 6.30693 6.36733 6.37176 6.54767 6.59278 6.70826 6.89617 7.63883 7.68949 8.27356 8.33531 9.45088 9.98908 10.33954 11.38240 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003018 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.678191 B = 9274.269677 C =10161.469023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.100 4.100 4 C -0.124 4.124 5 C -0.009 4.009 6 C -0.114 4.114 7 C -0.181 4.181 8 C -0.155 4.155 9 C -0.108 4.108 10 C 0.571 3.429 11 O -0.532 6.532 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.155 4.155 15 C 0.172 3.828 16 H 0.063 0.937 17 N -0.715 5.715 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.100 3.900 27 C -0.088 4.088 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 23.662 -6.183 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.142 4.142 5 C -0.010 4.010 6 C -0.132 4.132 7 C -0.218 4.218 8 C -0.192 4.192 9 C -0.111 4.111 10 C 0.359 3.641 11 O -0.409 6.409 12 N -0.341 5.341 13 C -0.023 4.023 14 C -0.196 4.196 15 C 0.061 3.939 16 H 0.081 0.919 17 N -0.355 5.355 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.023 4.023 27 C -0.106 4.106 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.563 23.533 -6.470 25.032 hybrid contribution -0.093 -0.746 0.705 1.031 sum -5.656 22.787 -5.765 24.176 Atomic orbital electron populations 1.20786 0.90758 1.02898 1.02562 1.19832 0.96302 0.92771 1.00765 1.21130 0.93944 0.97586 0.99162 1.20962 0.94028 0.97502 1.01701 1.19074 0.93592 0.91630 0.96663 1.20963 0.90302 0.97920 1.04022 1.23105 1.02527 0.94704 1.01476 1.22909 1.02249 1.02736 0.91314 1.19690 0.93644 0.92943 1.04872 1.17909 0.83356 0.82638 0.80213 1.90791 1.30782 1.80756 1.38590 1.48385 1.30242 1.17882 1.37557 1.22235 0.88433 0.99937 0.91723 1.23428 1.02040 0.94617 0.99544 1.21335 0.92903 0.87192 0.92518 0.91866 1.42258 1.87299 0.99192 1.06795 1.19204 1.42959 0.90280 0.85104 0.90975 1.24772 1.02462 0.96177 0.97215 1.69664 1.56753 1.04182 1.27154 0.86171 0.77550 0.78779 0.83540 1.21629 1.21715 1.20669 1.22590 0.97221 0.83734 0.98711 1.21264 0.92534 0.98371 0.98424 0.90935 0.91499 0.91386 0.85747 0.85360 0.86768 0.88514 0.88407 0.88327 0.88776 0.91788 0.91951 0.90698 0.90491 0.77915 0.93339 0.91179 0.90547 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.10 -0.93 5.87 -104.68 -0.61 -1.54 16 3 C -0.10 -0.90 9.69 -39.49 -0.38 -1.28 16 4 C -0.12 -1.24 9.36 -39.64 -0.37 -1.61 16 5 C -0.01 -0.11 5.62 -104.22 -0.59 -0.69 16 6 C -0.11 -1.41 4.83 -91.77 -0.44 -1.85 16 7 C -0.18 -1.68 9.87 -26.73 -0.26 -1.94 16 8 C -0.16 -1.66 10.21 -26.73 -0.27 -1.94 16 9 C -0.11 -1.49 5.40 -104.97 -0.57 -2.06 16 10 C 0.57 9.41 6.64 -12.33 -0.08 9.33 16 11 O -0.53 -10.34 15.97 5.32 0.08 -10.25 16 12 N -0.61 -9.69 3.32 -171.50 -0.57 -10.26 16 13 C 0.10 1.37 5.67 -3.06 -0.02 1.35 16 14 C -0.16 -2.52 6.64 -24.90 -0.17 -2.69 16 15 C 0.17 3.32 3.70 -65.66 -0.24 3.08 16 16 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 17 N -0.71 -17.32 5.28 -51.24 -0.27 -17.59 16 18 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.10 1.80 6.51 -2.42 -0.02 1.78 16 27 C -0.09 -1.01 8.18 -39.18 -0.32 -1.33 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.13 1.00 5.94 -52.49 -0.31 0.69 16 33 H 0.11 1.65 7.17 -51.93 -0.37 1.28 16 34 H 0.10 0.74 6.10 -51.93 -0.32 0.42 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.74 6.02 -51.93 -0.31 0.43 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.39 10.00 7.71 -40.82 -0.31 9.68 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 45 H 0.08 1.42 8.08 -51.92 -0.42 1.00 16 46 H 0.13 1.40 6.00 -52.49 -0.32 1.09 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -31.31 372.71 -10.64 -41.94 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.97 Total: 9.38 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -4.23 Total: -8.88 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.12 Total: -54.65 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.31 -10.64 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969451407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.830 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds