Wall clock time and date at job start Tue Mar 31 2020 10:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38383 * 119.92936 * 2 1 4 4 C 1.38343 * 120.29702 * 179.97438 * 3 2 1 5 5 C 1.37975 * 120.14176 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.07313 * 180.02562 * 5 4 3 7 7 C 1.52998 * 117.49388 * 3.55300 * 6 5 4 8 8 C 1.52997 * 117.49435 * 294.93069 * 6 5 4 9 9 C 1.39560 * 119.85585 * 0.03983 * 5 4 3 10 10 C 1.47841 * 120.14400 * 179.97438 * 9 5 4 11 11 O 1.21555 * 119.99853 * 311.72688 * 10 9 5 12 12 N 1.34782 * 120.00249 * 131.73274 * 10 9 5 13 13 C 1.47025 * 125.64686 * 4.87098 * 12 10 9 14 14 C 1.54321 * 107.27138 * 181.02362 * 13 12 10 15 15 C 1.55159 * 102.93865 * 22.19501 * 14 13 12 16 16 H 1.09004 * 111.00538 * 82.57330 * 15 14 13 17 17 N 1.46500 * 110.99980 * 206.42029 * 15 14 13 18 18 C 1.36938 * 120.00152 * 273.54563 * 17 15 14 19 19 H 1.07996 * 120.00023 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99822 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47029 * 90.00214 * 22 20 18 24 24 H 1.48501 * 109.47429 * 209.99970 * 22 20 18 25 25 H 1.48497 * 109.47169 * 330.00250 * 22 20 18 26 26 C 1.47418 * 125.65062 * 184.56655 * 12 10 9 27 27 C 1.37940 * 119.93032 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46842 * 270.01646 * 1 2 3 29 29 H 1.08996 * 109.47074 * 30.02341 * 1 2 3 30 30 H 1.09004 * 109.47191 * 150.01995 * 1 2 3 31 31 H 1.08001 * 119.85139 * 359.96459 * 3 2 1 32 32 H 1.08000 * 119.92818 * 180.02562 * 4 3 2 33 33 H 1.08996 * 115.55077 * 149.26074 * 6 5 4 34 34 H 1.08992 * 117.50247 * 359.97438 * 7 6 5 35 35 H 1.09002 * 117.49641 * 145.02536 * 7 6 5 36 36 H 1.09004 * 117.49699 * 214.97470 * 8 6 5 37 37 H 1.08999 * 117.50268 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.88370 * 300.44711 * 13 12 10 39 39 H 1.08996 * 109.87861 * 61.60758 * 13 12 10 40 40 H 1.08995 * 110.71763 * 140.55676 * 14 13 12 41 41 H 1.09001 * 110.72108 * 263.65643 * 14 13 12 42 42 H 0.97002 * 120.00140 * 93.55201 * 17 15 14 43 43 H 0.97005 * 119.99908 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.36911 * 274.74941 * 26 12 10 45 45 H 1.09008 * 110.36797 * 37.06646 * 26 12 10 46 46 H 1.07999 * 120.07434 * 359.74088 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0016 6 6 5.7882 0.0309 0.0028 7 6 6.4841 1.3909 0.0868 8 6 6.4911 0.6078 -1.2277 9 6 3.5911 -1.1936 0.0013 10 6 4.3353 -2.4711 0.0019 11 8 5.2471 -2.6436 -0.7832 12 7 4.0026 -3.4444 0.8728 13 6 2.8642 -3.4099 1.8026 14 6 2.8954 -4.7222 2.6140 15 6 4.3756 -5.1710 2.4920 16 1 5.0012 -4.6570 3.2218 17 7 4.4967 -6.6244 2.6307 18 6 4.6144 -7.1861 3.8740 19 1 4.6175 -6.5577 4.7524 20 6 4.7296 -8.5632 4.0054 21 7 4.7263 -9.3290 2.9350 22 14 4.8894 -9.3295 5.7015 23 1 3.5382 -9.6414 6.2330 24 1 5.6848 -10.5800 5.6069 25 1 5.5720 -8.3764 6.6130 26 6 4.7162 -4.7227 1.0465 27 6 2.1952 -1.1954 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6538 2.1325 -0.0006 32 1 4.1136 2.1476 0.0009 33 1 6.2644 -0.8105 0.5061 34 1 5.8521 2.2772 0.1408 35 1 7.4185 1.4444 0.6457 36 1 7.4300 0.1462 -1.5335 37 1 5.8637 0.9794 -2.0378 38 1 2.9596 -2.5565 2.4739 39 1 1.9310 -3.3419 1.2435 40 1 2.6330 -4.5378 3.6557 41 1 2.2275 -5.4632 2.1748 42 1 4.4936 -7.1889 1.8419 43 1 4.8072 -10.2913 3.0268 44 1 4.3595 -5.4575 0.3248 45 1 5.7909 -4.5749 0.9389 46 1 1.6553 -2.1308 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969451407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:31 Heat of formation + Delta-G solvation = 13.594982 kcal Electronic energy + Delta-G solvation = -25889.870632 eV Core-core repulsion = 22358.570575 eV Total energy + Delta-G solvation = -3531.300057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69633 -40.11718 -38.59610 -37.88372 -35.96392 -33.63263 -33.18492 -32.16002 -31.03052 -29.29744 -28.03731 -26.07546 -25.02884 -24.05099 -23.43756 -23.09639 -21.75196 -21.43702 -20.08486 -19.30821 -18.36748 -17.77014 -17.22926 -16.81236 -16.69143 -16.22365 -15.62599 -15.50733 -15.13812 -15.00998 -14.78896 -14.67391 -14.55805 -14.41170 -13.92966 -13.53289 -13.27376 -13.14959 -13.09477 -13.01499 -12.91141 -12.69374 -12.48863 -12.37560 -12.31064 -12.15653 -11.97812 -11.77352 -11.64957 -11.49975 -11.33489 -10.96403 -10.93956 -9.97152 -9.73199 -9.34751 -9.07313 -7.96270 -5.27049 -0.01729 0.33368 1.48659 1.50337 1.58086 1.59420 1.86969 2.56030 2.60146 3.05080 3.30653 3.41319 3.56705 3.65098 3.76852 3.86941 3.93727 3.98866 4.06287 4.10904 4.15510 4.21679 4.26965 4.36947 4.45589 4.49965 4.60877 4.64130 4.74554 4.78151 4.87313 4.91591 4.91903 4.95043 4.99606 5.06529 5.16869 5.19100 5.20637 5.31465 5.35449 5.38259 5.51790 5.54691 5.59394 5.96272 6.23999 6.41754 6.99003 7.30955 8.01138 8.26149 9.27049 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003018 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.678191 B = 9274.269677 C =10161.469023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.090 4.090 4 C -0.122 4.122 5 C -0.023 4.023 6 C -0.140 4.140 7 C -0.153 4.153 8 C -0.162 4.162 9 C -0.135 4.135 10 C 0.569 3.431 11 O -0.573 6.573 12 N -0.608 5.608 13 C 0.108 3.892 14 C -0.143 4.143 15 C 0.168 3.832 16 H 0.060 0.940 17 N -0.729 5.729 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.975 3.025 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.109 3.891 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 27.186 -5.201 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.108 4.108 4 C -0.140 4.140 5 C -0.024 4.024 6 C -0.159 4.159 7 C -0.189 4.189 8 C -0.199 4.199 9 C -0.138 4.138 10 C 0.359 3.641 11 O -0.454 6.454 12 N -0.341 5.341 13 C -0.014 4.014 14 C -0.183 4.183 15 C 0.058 3.942 16 H 0.078 0.922 17 N -0.368 5.368 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.193 1.193 26 C -0.015 4.015 27 C -0.113 4.113 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.668 27.121 -5.462 28.709 hybrid contribution 0.556 -1.726 0.347 1.846 sum -7.112 25.396 -5.115 26.864 Atomic orbital electron populations 1.20850 0.88621 1.03882 1.03532 1.20173 0.97802 0.92181 0.99419 1.21570 0.93644 0.98763 0.96841 1.21242 0.94707 0.97290 1.00762 1.19224 0.93518 0.92230 0.97412 1.20877 0.90888 0.98738 1.05352 1.23219 1.02511 0.93722 0.99464 1.22952 1.01864 1.03221 0.91862 1.19566 0.94528 0.91595 1.08151 1.18508 0.82902 0.83446 0.79238 1.90751 1.32781 1.81584 1.40258 1.48431 1.30604 1.17016 1.38023 1.22299 0.88594 0.98938 0.91523 1.23220 0.98822 0.95544 1.00742 1.21453 0.95090 0.84663 0.93023 0.92178 1.42399 1.87701 1.01065 1.05661 1.19598 1.40914 0.90586 0.86204 0.90108 1.25588 1.03407 0.96867 1.00688 1.69827 1.58915 1.03970 1.29246 0.85124 0.77426 0.77547 0.79537 1.21150 1.22537 1.19321 1.22284 0.96602 0.84820 0.97744 1.21349 0.91534 0.99597 0.98795 0.89839 0.89699 0.91334 0.82283 0.82914 0.90238 0.86015 0.87641 0.89097 0.88126 0.89923 0.89400 0.89526 0.91477 0.79337 0.93968 0.92233 0.92145 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.23 0.71 -0.39 16 2 C -0.10 -1.50 5.87 -19.90 -0.12 -1.62 16 3 C -0.09 -1.23 9.69 22.33 0.22 -1.02 16 4 C -0.12 -2.04 9.36 22.23 0.21 -1.83 16 5 C -0.02 -0.55 5.62 -19.61 -0.11 -0.66 16 6 C -0.14 -3.50 4.83 -11.54 -0.06 -3.55 16 7 C -0.15 -2.56 9.87 30.60 0.30 -2.26 16 8 C -0.16 -3.44 10.21 30.60 0.31 -3.13 16 9 C -0.14 -3.66 5.40 -20.09 -0.11 -3.77 16 10 C 0.57 19.42 6.64 86.78 0.58 20.00 16 11 O -0.57 -23.74 15.97 -3.89 -0.06 -23.80 16 12 N -0.61 -19.80 3.32 -814.77 -2.71 -22.51 16 13 C 0.11 2.83 5.67 86.73 0.49 3.32 16 14 C -0.14 -4.53 6.64 31.78 0.21 -4.32 16 15 C 0.17 6.59 3.70 46.46 0.17 6.76 16 16 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 17 N -0.73 -36.27 5.28 -316.02 -1.67 -37.94 16 18 C -0.24 -13.07 9.98 84.03 0.84 -12.23 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.97 -58.95 13.06 21.65 0.28 -58.66 16 22 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.11 4.12 6.51 86.93 0.57 4.69 16 27 C -0.09 -2.00 8.18 22.53 0.18 -1.82 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.07 0.69 8.08 -2.38 -0.02 0.67 16 31 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.71 5.94 -2.91 -0.02 1.69 16 33 H 0.08 2.49 7.17 -2.39 -0.02 2.47 16 34 H 0.12 1.41 6.10 -2.39 -0.01 1.39 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 1.90 6.02 -2.39 -0.01 1.89 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.37 20.23 7.71 -92.71 -0.71 19.51 16 43 H 0.25 14.87 8.31 -92.70 -0.77 14.09 16 44 H 0.06 2.35 8.00 -2.39 -0.02 2.33 16 45 H 0.06 2.43 8.08 -2.38 -0.02 2.41 16 46 H 0.13 2.62 6.00 -2.91 -0.02 2.60 16 Total: -1.00 -70.72 372.71 3.01 -67.70 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.28 Total: 33.30 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.87 Total: -5.48 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -4.09 Total: -119.12 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.72 3.01 -67.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969451407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.300 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds