Wall clock time and date at job start Tue Mar 31 2020 11:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32685 * 1 3 3 C 1.47667 * 119.99800 * 2 1 4 4 C 1.39715 * 119.99733 * 179.97438 * 3 2 1 5 5 C 1.37603 * 120.00562 * 180.02562 * 4 3 2 6 6 C 1.39742 * 119.99592 * 359.97208 * 5 4 3 7 7 C 1.47689 * 120.00183 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99957 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99673 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99941 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88201 * 322.57647 * 10 9 7 12 12 C 1.54907 * 111.00214 * 86.45493 * 10 9 7 13 13 N 1.47420 * 104.83524 * 81.10542 * 12 10 9 14 14 C 1.36932 * 125.65088 * 204.09015 * 13 12 10 15 15 H 1.08001 * 120.00072 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00288 * 0.04266 * 14 13 12 17 17 N 1.31619 * 119.99512 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00603 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46783 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47258 * 119.99537 * 18 16 14 21 21 H 1.48498 * 109.47021 * 240.00276 * 18 16 14 22 22 C 1.47026 * 108.70428 * 24.12518 * 13 12 10 23 23 C 1.54330 * 107.26840 * 358.94103 * 22 13 12 24 24 C 1.53005 * 110.71673 * 96.16971 * 23 22 13 25 25 C 1.52994 * 110.71826 * 219.44364 * 23 22 13 26 26 C 1.39743 * 119.99214 * 0.25830 * 6 5 4 27 27 C 1.37607 * 119.99443 * 359.51041 * 26 6 5 28 28 H 1.07999 * 119.99568 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99989 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.00208 * 179.97438 * 2 1 3 31 31 H 1.08005 * 119.99782 * 359.97235 * 4 3 2 32 32 H 1.08004 * 119.99943 * 179.97438 * 5 4 3 33 33 H 0.97001 * 120.00721 * 0.02562 * 9 7 6 34 34 H 1.08997 * 110.36783 * 322.26262 * 12 10 9 35 35 H 1.08999 * 110.36448 * 199.94003 * 12 10 9 36 36 H 0.97003 * 120.00403 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88351 * 118.35702 * 22 13 12 38 38 H 1.08998 * 109.88379 * 239.52492 * 22 13 12 39 39 H 1.08998 * 109.47047 * 61.45324 * 24 23 22 40 40 H 1.09000 * 109.46907 * 181.45365 * 24 23 22 41 41 H 1.09001 * 109.47302 * 301.45440 * 24 23 22 42 42 H 1.08994 * 109.47458 * 58.54762 * 25 23 22 43 43 H 1.09010 * 109.46817 * 178.55144 * 25 23 22 44 44 H 1.09000 * 109.47214 * 298.54123 * 25 23 22 45 45 H 1.08002 * 120.00153 * 179.72160 * 26 6 5 46 46 H 1.08002 * 119.99617 * 180.23456 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4623 1.2788 0.0005 5 6 4.1504 2.4704 0.0011 6 6 3.4518 3.6807 0.0005 7 6 4.1902 4.9597 0.0016 8 8 5.4060 4.9597 0.0026 9 7 3.5163 6.1268 0.0016 10 6 4.2488 7.3956 0.0021 11 1 5.1432 7.3276 0.6214 12 6 4.6044 7.8320 -1.4410 13 7 3.3756 8.4604 -1.9590 14 6 3.0357 8.5791 -3.2801 15 1 2.1089 9.0588 -3.5583 16 6 3.8823 8.0828 -4.2619 17 7 5.0113 7.4975 -3.9229 18 14 3.4184 8.2441 -6.0642 19 1 2.1084 8.9343 -6.1782 20 1 4.4573 9.0327 -6.7741 21 1 3.3202 6.8932 -6.6729 22 6 2.5756 8.9392 -0.8221 23 6 3.3389 8.5638 0.4656 24 6 4.1805 9.7425 0.9591 25 6 2.3692 8.0962 1.5527 26 6 2.0543 3.6805 0.0048 27 6 1.3665 2.4887 -0.0005 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8669 -0.9353 0.0004 31 1 4.0023 0.3435 0.0014 32 1 5.2305 2.4703 0.0019 33 1 2.5463 6.1269 0.0012 34 1 4.8706 6.9646 -2.0449 35 1 5.4225 8.5522 -1.4288 36 1 5.6032 7.1509 -4.6089 37 1 2.4579 10.0212 -0.8812 38 1 1.5980 8.4571 -0.8275 39 1 3.5267 10.5821 1.1949 40 1 4.7299 9.4475 1.8530 41 1 4.8843 10.0375 0.1808 42 1 1.8038 7.2377 1.1906 43 1 2.9309 7.8123 2.4428 44 1 1.6823 8.9058 1.7996 45 1 1.5142 4.6158 0.0089 46 1 0.2865 2.4886 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975078200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:10 Heat of formation + Delta-G solvation = 16.801606 kcal Electronic energy + Delta-G solvation = -26489.496015 eV Core-core repulsion = 22958.335007 eV Total energy + Delta-G solvation = -3531.161007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49017 -40.19149 -39.01469 -35.72256 -35.15759 -34.52039 -32.61752 -32.05907 -30.78615 -29.58546 -28.03731 -27.41877 -25.68595 -24.57771 -23.67246 -22.47002 -21.47652 -20.59410 -20.24101 -18.86245 -18.71431 -17.58476 -17.07335 -16.59483 -16.12974 -15.96183 -15.79119 -15.56546 -15.30562 -15.10980 -14.67524 -14.45878 -14.17455 -14.11181 -13.82151 -13.66955 -13.64873 -13.20126 -13.07337 -13.02328 -12.88164 -12.65244 -12.57978 -12.23679 -12.07009 -11.81091 -11.79514 -11.77326 -11.44812 -11.37084 -11.30625 -10.99128 -10.76959 -10.02379 -10.00556 -9.18955 -8.85326 -7.75994 -5.21514 -0.42204 0.40018 1.32036 1.43164 1.44318 1.54676 2.07957 2.25852 2.47933 2.97709 3.33645 3.54121 3.65088 3.69750 3.77070 3.91207 3.94811 3.96462 4.06242 4.34407 4.34542 4.40039 4.46818 4.50955 4.69464 4.76844 4.82730 4.87144 4.91537 4.94884 5.02259 5.02756 5.09284 5.19422 5.24040 5.28663 5.32353 5.34548 5.37614 5.48092 5.52222 5.66338 5.68125 5.82561 5.83028 5.93108 6.30789 6.58901 7.08366 7.26195 7.78629 8.42464 9.24599 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004326 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.457326 B = 6470.741584 C = 7724.818851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C -0.036 4.036 4 C -0.121 4.121 5 C -0.075 4.075 6 C -0.154 4.154 7 C 0.548 3.452 8 O -0.587 6.587 9 N -0.688 5.688 10 C 0.135 3.865 11 H 0.078 0.922 12 C 0.154 3.846 13 N -0.618 5.618 14 C -0.232 4.232 15 H 0.086 0.914 16 C -0.069 4.069 17 N -0.949 5.949 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.295 1.295 21 H -0.296 1.296 22 C 0.138 3.862 23 C -0.073 4.073 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.082 4.082 27 C -0.126 4.126 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.122 0.878 33 H 0.406 0.594 34 H 0.067 0.933 35 H -0.015 1.015 36 H 0.242 0.758 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.139 0.861 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 -10.919 13.919 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.036 4.036 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.157 4.157 7 C 0.338 3.662 8 O -0.469 6.469 9 N -0.338 5.338 10 C 0.029 3.971 11 H 0.096 0.904 12 C 0.028 3.972 13 N -0.343 5.343 14 C -0.361 4.361 15 H 0.104 0.896 16 C -0.262 4.262 17 N -0.599 5.599 18 Si 0.805 3.195 19 H -0.185 1.185 20 H -0.223 1.223 21 H -0.223 1.223 22 C 0.013 3.987 23 C -0.074 4.074 24 C -0.184 4.184 25 C -0.183 4.183 26 C -0.100 4.100 27 C -0.143 4.143 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.003 0.997 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.157 0.843 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.957 -10.900 13.731 20.674 hybrid contribution 0.371 0.422 -1.538 1.638 sum -10.586 -10.478 12.193 19.248 Atomic orbital electron populations 1.24763 0.95275 1.03767 0.95426 1.21933 0.95855 0.95126 1.03130 1.19657 0.93313 0.94457 0.96214 1.21459 0.93812 0.97957 1.00617 1.21260 1.00542 0.91597 0.96024 1.20022 0.94822 0.92684 1.08197 1.18742 0.87019 0.84936 0.75545 1.90714 1.15457 1.88283 1.52444 1.45626 1.10400 1.04641 1.73151 1.22196 0.94879 0.82880 0.97131 0.90392 1.21933 0.87320 0.96502 0.91470 1.44687 1.20440 1.67835 1.01382 1.19495 1.03535 1.31038 0.82016 0.89610 1.25641 0.96913 1.01412 1.02203 1.70141 1.12950 1.45358 1.31487 0.85026 0.77713 0.76741 0.79982 1.18468 1.22283 1.22350 1.21661 0.93908 0.96865 0.86270 1.21834 0.95940 0.94338 0.95303 1.21695 0.99454 0.96794 1.00458 1.21707 0.98242 1.01632 0.96698 1.21392 0.91956 0.99894 0.96782 1.21527 1.01423 0.90783 1.00600 0.85516 0.87348 0.84669 0.82838 0.85966 0.75550 0.91473 0.99691 0.94863 0.95423 0.94608 0.90131 0.91042 0.94822 0.92440 0.91377 0.90103 0.84323 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 14.15 66.65 0.94 -0.78 16 2 C -0.14 -2.07 9.90 23.59 0.23 -1.84 16 3 C -0.04 -0.74 5.87 -20.07 -0.12 -0.86 16 4 C -0.12 -2.78 9.76 22.48 0.22 -2.56 16 5 C -0.08 -2.27 9.57 22.48 0.22 -2.06 16 6 C -0.15 -5.06 5.88 -20.05 -0.12 -5.18 16 7 C 0.55 22.17 7.77 86.74 0.67 22.84 16 8 O -0.59 -28.57 16.08 -3.95 -0.06 -28.64 16 9 N -0.69 -25.40 4.63 -438.97 -2.03 -27.43 16 10 C 0.14 5.46 2.56 46.38 0.12 5.58 16 11 H 0.08 3.26 7.63 -2.39 -0.02 3.25 16 12 C 0.15 8.14 5.26 86.86 0.46 8.60 16 13 N -0.62 -31.74 3.39 -691.99 -2.35 -34.09 16 14 C -0.23 -13.06 10.27 84.03 0.86 -12.20 16 15 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 16 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 17 N -0.95 -60.14 10.09 21.65 0.22 -59.92 16 18 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 22 C 0.14 5.36 6.41 86.73 0.56 5.92 16 23 C -0.07 -2.33 0.81 -50.99 -0.04 -2.37 16 24 C -0.13 -3.66 8.44 71.98 0.61 -3.05 16 25 C -0.13 -2.85 8.16 71.98 0.59 -2.26 16 26 C -0.08 -2.10 9.52 22.48 0.21 -1.88 16 27 C -0.13 -2.61 9.38 22.48 0.21 -2.40 16 28 H 0.13 0.87 8.06 -2.91 -0.02 0.85 16 29 H 0.11 1.08 6.02 -2.91 -0.02 1.06 16 30 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.12 3.93 7.64 -2.91 -0.02 3.90 16 33 H 0.41 12.74 4.84 -92.71 -0.45 12.30 16 34 H 0.07 4.22 5.87 -2.39 -0.01 4.20 16 35 H -0.01 -0.85 7.71 -2.39 -0.02 -0.87 16 36 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.03 1.07 7.84 -2.39 -0.02 1.05 16 38 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.03 1.17 7.44 -2.39 -0.02 1.15 16 42 H 0.06 1.24 6.21 -2.39 -0.01 1.22 16 43 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.14 3.06 6.38 -2.91 -0.02 3.05 16 46 H 0.16 2.27 6.15 -2.91 -0.02 2.25 16 Total: -1.00 -77.53 368.70 4.43 -73.10 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.53 Total: 25.94 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 6.09 Total: 1.90 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.16 Total: -121.44 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.64 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.53 4.43 -73.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975078200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.905 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds