Wall clock time and date at job start Tue Mar 31 2020 11:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47665 * 120.00198 * 2 1 4 4 C 1.39715 * 120.00007 * 179.97438 * 3 2 1 5 5 C 1.37594 * 120.00664 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99535 * 359.97438 * 5 4 3 7 7 C 1.47682 * 120.00589 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99752 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00290 * 180.27273 * 7 6 5 10 10 C 1.46505 * 120.00095 * 179.72293 * 9 7 6 11 11 H 1.09000 * 110.64095 * 34.30098 * 10 9 7 12 12 C 1.54324 * 110.71897 * 271.15976 * 10 9 7 13 13 N 1.47487 * 107.03437 * 263.78909 * 12 10 9 14 14 C 1.36943 * 125.59439 * 181.00731 * 13 12 10 15 15 H 1.07991 * 120.00122 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99758 * 0.02562 * 14 13 12 17 17 N 1.31627 * 120.00179 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99942 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46910 * 120.00089 * 18 16 14 21 21 H 1.48502 * 109.47360 * 239.99892 * 18 16 14 22 22 C 1.47424 * 108.76251 * 1.02555 * 13 12 10 23 23 C 1.54912 * 104.82929 * 335.89662 * 22 13 12 24 24 C 1.53006 * 111.00238 * 278.93182 * 23 22 13 25 25 C 1.53001 * 111.00411 * 155.08344 * 23 22 13 26 26 C 1.39743 * 119.99140 * 0.25438 * 6 5 4 27 27 C 1.37603 * 119.99646 * 359.49064 * 26 6 5 28 28 H 1.08000 * 119.99533 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99966 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.99435 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00579 * 179.97438 * 5 4 3 33 33 H 0.97000 * 120.00112 * 359.72728 * 9 7 6 34 34 H 1.08999 * 109.88733 * 23.24579 * 12 10 9 35 35 H 1.08995 * 109.88200 * 144.41328 * 12 10 9 36 36 H 0.96990 * 120.00064 * 180.02562 * 17 16 14 37 37 H 1.08995 * 110.36754 * 217.05647 * 22 13 12 38 38 H 1.09006 * 110.45938 * 94.77486 * 22 13 12 39 39 H 1.08991 * 109.47115 * 172.19733 * 24 23 22 40 40 H 1.09003 * 109.46779 * 292.20187 * 24 23 22 41 41 H 1.09001 * 109.46845 * 52.19322 * 24 23 22 42 42 H 1.08997 * 109.46975 * 307.80060 * 25 23 22 43 43 H 1.08998 * 109.47186 * 67.80194 * 25 23 22 44 44 H 1.08995 * 109.46720 * 187.79942 * 25 23 22 45 45 H 1.08001 * 120.00039 * 179.74739 * 26 6 5 46 46 H 1.08001 * 119.99604 * 180.22858 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4624 1.2787 0.0005 5 6 4.1505 2.4702 0.0000 6 6 3.4519 3.6805 -0.0016 7 6 4.1902 4.9595 -0.0016 8 8 5.4061 4.9595 0.0003 9 7 3.5164 6.1267 0.0024 10 6 4.2489 7.3955 0.0085 11 1 5.1715 7.3093 -0.5655 12 6 4.5454 7.8477 1.4539 13 7 3.4851 8.7994 1.8350 14 6 3.3918 9.4496 3.0366 15 1 2.5735 10.1299 3.2203 16 6 4.3492 9.2342 4.0184 17 7 5.3463 8.4046 3.7946 18 14 4.2217 10.1206 5.6577 19 1 3.0174 10.9895 5.6582 20 1 4.1124 9.1232 6.7525 21 1 5.4335 10.9533 5.8658 22 6 2.5424 8.9346 0.7096 23 6 3.3634 8.5432 -0.5445 24 6 4.2217 9.7149 -1.0257 25 6 2.4492 8.0401 -1.6634 26 6 2.0544 3.6804 0.0027 27 6 1.3666 2.4887 -0.0021 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8668 -0.9353 0.0004 31 1 4.0022 0.3433 0.0014 32 1 5.2305 2.4702 0.0008 33 1 2.5464 6.1267 0.0012 34 1 4.5319 6.9866 2.1220 35 1 5.5181 8.3376 1.4968 36 1 6.0150 8.2538 4.4807 37 1 2.1935 9.9640 0.6285 38 1 1.6978 8.2573 0.8365 39 1 4.8887 9.3753 -1.8180 40 1 3.5759 10.5053 -1.4081 41 1 4.8118 10.0987 -0.1935 42 1 1.8008 7.2538 -1.2770 43 1 1.8396 8.8648 -2.0330 44 1 3.0558 7.6436 -2.4775 45 1 1.5144 4.6157 0.0055 46 1 0.2866 2.4886 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975078203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:15 Heat of formation + Delta-G solvation = 35.012385 kcal Electronic energy + Delta-G solvation = -26273.426449 eV Core-core repulsion = 22743.055120 eV Total energy + Delta-G solvation = -3530.371329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19191 -38.97198 -37.62834 -34.33743 -33.87016 -33.05141 -31.12238 -30.66943 -29.80574 -27.96509 -26.79502 -25.62119 -24.45034 -23.12767 -22.76682 -20.90932 -20.05359 -19.64249 -18.91214 -17.62560 -16.71554 -16.42822 -15.69686 -15.05201 -14.93918 -14.79183 -14.35173 -14.10874 -13.86937 -13.83914 -13.46149 -13.36075 -13.23035 -12.87831 -12.51888 -12.37383 -12.03031 -11.96839 -11.66258 -11.48315 -11.36258 -11.07032 -11.02999 -10.97765 -10.77887 -10.52967 -10.37726 -10.22387 -9.99270 -9.85157 -9.63343 -9.54507 -9.11391 -8.62625 -8.52175 -8.29703 -6.80803 -5.66827 -3.01783 0.48514 1.30252 2.11506 3.22530 3.41604 3.46575 3.49675 3.53515 3.98960 4.48082 4.51865 4.55793 4.76899 4.92575 4.96333 5.03663 5.21834 5.27389 5.28598 5.32190 5.49856 5.55423 5.62793 5.69515 5.81308 5.88305 5.92583 6.02792 6.04139 6.09679 6.17173 6.20019 6.24434 6.29747 6.35106 6.42015 6.53458 6.58974 6.61802 6.68332 6.73541 6.79113 6.96734 7.57855 7.66654 7.84436 7.95260 8.27136 8.61143 9.23529 9.84717 10.50145 11.43830 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003616 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.598940 B = 7742.481556 C = 8571.999291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.119 4.119 3 C -0.044 4.044 4 C -0.118 4.118 5 C -0.060 4.060 6 C -0.123 4.123 7 C 0.553 3.447 8 O -0.537 6.537 9 N -0.703 5.703 10 C 0.124 3.876 11 H 0.089 0.911 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.229 4.229 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.910 3.090 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.144 3.856 23 C -0.090 4.090 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.084 4.084 27 C -0.123 4.123 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.394 0.606 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.252 0.748 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -12.482 -12.243 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.045 4.045 4 C -0.136 4.136 5 C -0.079 4.079 6 C -0.126 4.126 7 C 0.340 3.660 8 O -0.415 6.415 9 N -0.354 5.354 10 C 0.019 3.981 11 H 0.107 0.893 12 C 0.050 3.950 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.565 5.565 18 Si 0.741 3.259 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.218 1.218 22 C 0.018 3.982 23 C -0.091 4.091 24 C -0.183 4.183 25 C -0.189 4.189 26 C -0.102 4.102 27 C -0.140 4.140 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.230 0.770 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.111 -12.424 -12.024 19.098 hybrid contribution -0.543 0.391 1.071 1.263 sum -8.655 -12.034 -10.953 18.431 Atomic orbital electron populations 1.24442 0.95693 1.02384 0.98829 1.21839 0.95252 0.95773 1.00857 1.19275 0.93426 0.93167 0.98597 1.21217 0.93128 0.98144 1.01092 1.21231 1.00981 0.90707 0.94980 1.20173 0.93643 0.94128 1.04629 1.18151 0.87338 0.83649 0.76886 1.90774 1.13304 1.87508 1.49959 1.45938 1.10018 1.05606 1.73867 1.22511 0.94270 0.80972 1.00357 0.89325 1.21609 0.92238 0.93234 0.87899 1.44559 1.25916 1.50412 1.12071 1.19063 1.08002 1.19412 0.89292 0.90456 1.24814 0.97406 0.99689 0.98483 1.69972 1.14487 1.38574 1.33424 0.86075 0.77200 0.78736 0.83905 1.20581 1.21853 1.21785 1.21616 0.91976 0.98063 0.86557 1.22017 0.96354 0.95332 0.95419 1.21597 0.99188 0.96478 1.01072 1.21676 0.98918 1.00449 0.97807 1.21249 0.93154 0.98421 0.97422 1.21189 0.99991 0.91491 1.01361 0.87713 0.87883 0.86275 0.85293 0.84416 0.76985 0.93290 0.92729 0.93753 0.94082 0.96858 0.93318 0.92872 0.91151 0.93224 0.92586 0.92793 0.85519 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.15 28.84 0.41 -0.84 16 2 C -0.12 -0.99 9.90 -37.62 -0.37 -1.37 16 3 C -0.04 -0.47 5.87 -104.95 -0.62 -1.09 16 4 C -0.12 -1.31 9.76 -39.26 -0.38 -1.69 16 5 C -0.06 -0.82 9.57 -39.25 -0.38 -1.19 16 6 C -0.12 -1.82 5.88 -104.91 -0.62 -2.44 16 7 C 0.55 10.04 7.77 -12.41 -0.10 9.94 16 8 O -0.54 -11.68 16.02 5.29 0.08 -11.60 16 9 N -0.70 -12.06 4.46 -53.02 -0.24 -12.30 16 10 C 0.12 2.39 2.54 -66.09 -0.17 2.22 16 11 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 12 C 0.18 4.35 4.82 -2.81 -0.01 4.34 16 13 N -0.60 -15.06 3.39 -169.70 -0.58 -15.64 16 14 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 18 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.14 2.84 6.14 -2.53 -0.02 2.83 16 23 C -0.09 -1.49 0.83 -152.36 -0.13 -1.61 16 24 C -0.13 -2.01 8.57 37.16 0.32 -1.69 16 25 C -0.13 -1.68 8.22 37.16 0.31 -1.38 16 26 C -0.08 -1.03 9.52 -39.25 -0.37 -1.40 16 27 C -0.12 -1.31 9.38 -39.26 -0.37 -1.68 16 28 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.10 0.68 6.02 -52.49 -0.32 0.37 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.14 1.89 7.64 -52.49 -0.40 1.49 16 33 H 0.39 5.82 5.03 -40.82 -0.21 5.62 16 34 H 0.05 1.40 7.41 -51.93 -0.38 1.02 16 35 H 0.05 1.53 7.39 -51.93 -0.38 1.14 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 42 H 0.05 0.59 6.43 -51.93 -0.33 0.25 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.13 1.35 6.38 -52.49 -0.34 1.01 16 46 H 0.13 1.07 6.15 -52.49 -0.32 0.75 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -33.01 370.54 -9.16 -42.17 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.82 Total: 5.28 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.74 Total: -3.86 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.24 Total: -54.91 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.01 -9.16 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975078203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.183 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds