Wall clock time and date at job start Tue Mar 31 2020 11:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47665 * 120.00198 * 2 1 4 4 C 1.39715 * 120.00007 * 179.97438 * 3 2 1 5 5 C 1.37594 * 120.00664 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99535 * 359.97438 * 5 4 3 7 7 C 1.47682 * 120.00589 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99752 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00290 * 180.27273 * 7 6 5 10 10 C 1.46505 * 120.00095 * 179.72293 * 9 7 6 11 11 H 1.09000 * 110.64095 * 34.30098 * 10 9 7 12 12 C 1.54324 * 110.71897 * 271.15976 * 10 9 7 13 13 N 1.47487 * 107.03437 * 263.78909 * 12 10 9 14 14 C 1.36943 * 125.59439 * 181.00731 * 13 12 10 15 15 H 1.07991 * 120.00122 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99758 * 0.02562 * 14 13 12 17 17 N 1.31627 * 120.00179 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99942 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46910 * 120.00089 * 18 16 14 21 21 H 1.48502 * 109.47360 * 239.99892 * 18 16 14 22 22 C 1.47424 * 108.76251 * 1.02555 * 13 12 10 23 23 C 1.54912 * 104.82929 * 335.89662 * 22 13 12 24 24 C 1.53006 * 111.00238 * 278.93182 * 23 22 13 25 25 C 1.53001 * 111.00411 * 155.08344 * 23 22 13 26 26 C 1.39743 * 119.99140 * 0.25438 * 6 5 4 27 27 C 1.37603 * 119.99646 * 359.49064 * 26 6 5 28 28 H 1.08000 * 119.99533 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99966 * 179.97438 * 2 1 3 31 31 H 1.08003 * 119.99435 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00579 * 179.97438 * 5 4 3 33 33 H 0.97000 * 120.00112 * 359.72728 * 9 7 6 34 34 H 1.08999 * 109.88733 * 23.24579 * 12 10 9 35 35 H 1.08995 * 109.88200 * 144.41328 * 12 10 9 36 36 H 0.96990 * 120.00064 * 180.02562 * 17 16 14 37 37 H 1.08995 * 110.36754 * 217.05647 * 22 13 12 38 38 H 1.09006 * 110.45938 * 94.77486 * 22 13 12 39 39 H 1.08991 * 109.47115 * 172.19733 * 24 23 22 40 40 H 1.09003 * 109.46779 * 292.20187 * 24 23 22 41 41 H 1.09001 * 109.46845 * 52.19322 * 24 23 22 42 42 H 1.08997 * 109.46975 * 307.80060 * 25 23 22 43 43 H 1.08998 * 109.47186 * 67.80194 * 25 23 22 44 44 H 1.08995 * 109.46720 * 187.79942 * 25 23 22 45 45 H 1.08001 * 120.00039 * 179.74739 * 26 6 5 46 46 H 1.08001 * 119.99604 * 180.22858 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4624 1.2787 0.0005 5 6 4.1505 2.4702 0.0000 6 6 3.4519 3.6805 -0.0016 7 6 4.1902 4.9595 -0.0016 8 8 5.4061 4.9595 0.0003 9 7 3.5164 6.1267 0.0024 10 6 4.2489 7.3955 0.0085 11 1 5.1715 7.3093 -0.5655 12 6 4.5454 7.8477 1.4539 13 7 3.4851 8.7994 1.8350 14 6 3.3918 9.4496 3.0366 15 1 2.5735 10.1299 3.2203 16 6 4.3492 9.2342 4.0184 17 7 5.3463 8.4046 3.7946 18 14 4.2217 10.1206 5.6577 19 1 3.0174 10.9895 5.6582 20 1 4.1124 9.1232 6.7525 21 1 5.4335 10.9533 5.8658 22 6 2.5424 8.9346 0.7096 23 6 3.3634 8.5432 -0.5445 24 6 4.2217 9.7149 -1.0257 25 6 2.4492 8.0401 -1.6634 26 6 2.0544 3.6804 0.0027 27 6 1.3666 2.4887 -0.0021 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8668 -0.9353 0.0004 31 1 4.0022 0.3433 0.0014 32 1 5.2305 2.4702 0.0008 33 1 2.5464 6.1267 0.0012 34 1 4.5319 6.9866 2.1220 35 1 5.5181 8.3376 1.4968 36 1 6.0150 8.2538 4.4807 37 1 2.1935 9.9640 0.6285 38 1 1.6978 8.2573 0.8365 39 1 4.8887 9.3753 -1.8180 40 1 3.5759 10.5053 -1.4081 41 1 4.8118 10.0987 -0.1935 42 1 1.8008 7.2538 -1.2770 43 1 1.8396 8.8648 -2.0330 44 1 3.0558 7.6436 -2.4775 45 1 1.5144 4.6157 0.0055 46 1 0.2866 2.4886 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975078203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:14 Heat of formation + Delta-G solvation = 15.108544 kcal Electronic energy + Delta-G solvation = -26274.289544 eV Core-core repulsion = 22743.055120 eV Total energy + Delta-G solvation = -3531.234424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52885 -40.19015 -39.03821 -35.73386 -35.16052 -34.51017 -32.60470 -32.07151 -30.80792 -29.54749 -28.06106 -27.42004 -25.72748 -24.59266 -23.67867 -22.42070 -21.56821 -20.60628 -20.27793 -18.87939 -18.69252 -17.58430 -17.00068 -16.63723 -16.11524 -15.96190 -15.85920 -15.58170 -15.37953 -15.13956 -14.79307 -14.40495 -14.14928 -14.07679 -13.78418 -13.74773 -13.45497 -13.22840 -13.13464 -12.96276 -12.84299 -12.72046 -12.59251 -12.24208 -12.07403 -11.86759 -11.81134 -11.76306 -11.53633 -11.32926 -11.31231 -11.03792 -10.75510 -10.05737 -10.02557 -9.19398 -8.89903 -7.83677 -5.20610 -0.43700 0.39631 1.30511 1.43494 1.44861 1.55285 2.05288 2.19339 2.48756 2.96441 3.34720 3.46289 3.63906 3.71448 3.76761 3.90353 3.94592 3.95896 4.06477 4.34009 4.34250 4.38620 4.46653 4.50920 4.66487 4.75567 4.84795 4.87509 4.94284 4.94770 5.02390 5.04018 5.11738 5.15920 5.23678 5.28244 5.33745 5.34956 5.36604 5.46214 5.55310 5.66636 5.70117 5.73420 5.82264 5.92469 6.16392 6.54284 7.06687 7.21641 7.76827 8.41754 9.25789 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003616 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.598940 B = 7742.481556 C = 8571.999291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.144 4.144 3 C -0.035 4.035 4 C -0.121 4.121 5 C -0.075 4.075 6 C -0.155 4.155 7 C 0.548 3.452 8 O -0.587 6.587 9 N -0.693 5.693 10 C 0.136 3.864 11 H 0.076 0.924 12 C 0.194 3.806 13 N -0.620 5.620 14 C -0.234 4.234 15 H 0.089 0.911 16 C -0.072 4.072 17 N -0.954 5.954 18 Si 0.978 3.022 19 H -0.259 1.259 20 H -0.297 1.297 21 H -0.295 1.295 22 C 0.138 3.862 23 C -0.074 4.074 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.080 4.080 27 C -0.126 4.126 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.122 0.878 33 H 0.408 0.592 34 H -0.002 1.002 35 H 0.006 0.994 36 H 0.242 0.758 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -13.400 -13.776 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.035 4.035 4 C -0.139 4.139 5 C -0.094 4.094 6 C -0.158 4.158 7 C 0.338 3.662 8 O -0.469 6.469 9 N -0.344 5.344 10 C 0.030 3.970 11 H 0.094 0.906 12 C 0.067 3.933 13 N -0.346 5.346 14 C -0.363 4.363 15 H 0.107 0.893 16 C -0.265 4.265 17 N -0.604 5.604 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.224 1.224 21 H -0.223 1.223 22 C 0.014 3.986 23 C -0.076 4.076 24 C -0.181 4.181 25 C -0.182 4.182 26 C -0.099 4.099 27 C -0.143 4.143 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.171 0.829 32 H 0.140 0.860 33 H 0.247 0.753 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.160 0.840 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.274 -13.328 -13.593 22.651 hybrid contribution 0.610 0.570 1.534 1.747 sum -11.664 -12.758 -12.059 21.077 Atomic orbital electron populations 1.24768 0.95273 1.03792 0.95320 1.21932 0.95862 0.95165 1.03196 1.19665 0.93300 0.94486 0.96075 1.21455 0.93822 0.97973 1.00644 1.21263 1.00561 0.91601 0.95940 1.19978 0.94825 0.92444 1.08522 1.18800 0.87020 0.84948 0.75456 1.90735 1.15571 1.88268 1.52299 1.45743 1.10546 1.04632 1.73497 1.22123 0.95296 0.83055 0.96530 0.90562 1.21149 0.90622 0.90992 0.90499 1.44800 1.26905 1.50028 1.12906 1.19528 1.07671 1.18864 0.90246 0.89347 1.25700 0.97473 1.01007 1.02273 1.70252 1.15438 1.40648 1.34041 0.85007 0.77543 0.77488 0.79297 1.18344 1.22422 1.22259 1.21895 0.91740 0.99071 0.85935 1.21997 0.95912 0.94039 0.95611 1.21597 0.99486 0.96961 1.00095 1.21657 0.98517 1.01755 0.96231 1.21413 0.91851 0.99994 0.96638 1.21538 1.01472 0.90754 1.00558 0.85594 0.87249 0.84760 0.82919 0.85971 0.75321 0.98330 0.97547 0.94849 0.93102 0.95075 0.91684 0.90078 0.95117 0.91894 0.90006 0.91807 0.83985 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 14.15 66.65 0.94 -0.56 16 2 C -0.14 -1.89 9.90 23.59 0.23 -1.66 16 3 C -0.03 -0.66 5.87 -20.07 -0.12 -0.77 16 4 C -0.12 -2.58 9.76 22.47 0.22 -2.36 16 5 C -0.07 -2.11 9.57 22.48 0.22 -1.89 16 6 C -0.15 -4.71 5.88 -20.05 -0.12 -4.82 16 7 C 0.55 21.00 7.77 86.74 0.67 21.68 16 8 O -0.59 -27.67 16.02 -3.98 -0.06 -27.73 16 9 N -0.69 -24.23 4.46 -439.92 -1.96 -26.19 16 10 C 0.14 5.45 2.54 46.18 0.12 5.56 16 11 H 0.08 3.26 7.53 -2.39 -0.02 3.24 16 12 C 0.19 10.29 4.82 86.64 0.42 10.71 16 13 N -0.62 -31.84 3.39 -690.81 -2.34 -34.19 16 14 C -0.23 -13.21 10.28 84.03 0.86 -12.34 16 15 H 0.09 4.69 7.83 -2.92 -0.02 4.66 16 16 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 17 N -0.95 -61.02 10.31 21.65 0.22 -60.80 16 18 Si 0.98 47.26 29.55 68.60 2.03 49.28 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 C 0.14 5.27 6.14 86.86 0.53 5.81 16 23 C -0.07 -2.37 0.83 -50.79 -0.04 -2.41 16 24 C -0.12 -3.83 8.57 71.98 0.62 -3.21 16 25 C -0.12 -2.73 8.22 71.98 0.59 -2.14 16 26 C -0.08 -1.86 9.52 22.48 0.21 -1.64 16 27 C -0.13 -2.34 9.38 22.48 0.21 -2.13 16 28 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.11 0.92 6.02 -2.91 -0.02 0.90 16 30 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.12 3.70 7.64 -2.91 -0.02 3.68 16 33 H 0.41 11.64 5.03 -92.71 -0.47 11.17 16 34 H 0.00 -0.09 7.41 -2.39 -0.02 -0.11 16 35 H 0.01 0.39 7.39 -2.39 -0.02 0.37 16 36 H 0.24 15.23 8.31 -92.72 -0.77 14.46 16 37 H 0.05 1.86 8.05 -2.39 -0.02 1.84 16 38 H 0.03 1.11 7.98 -2.38 -0.02 1.09 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 42 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.14 2.69 6.38 -2.91 -0.02 2.68 16 46 H 0.16 1.94 6.15 -2.91 -0.02 1.93 16 Total: -1.00 -79.00 370.54 4.43 -74.57 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.51 Total: 21.01 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.04 Total: 4.04 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -4.08 Total: -121.17 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -79.00 4.43 -74.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975078203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.680 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds