Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37957 * 120.07389 * 2 1 4 4 C 1.38362 * 120.14417 * 180.27848 * 3 2 1 5 5 C 1.38360 * 120.29414 * 359.73690 * 4 3 2 6 6 C 1.37953 * 120.14412 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.07352 * 179.97438 * 6 5 4 8 8 C 1.39577 * 119.85281 * 359.97438 * 6 5 4 9 9 C 1.47849 * 120.14321 * 179.97438 * 8 6 5 10 10 O 1.21557 * 119.99720 * 90.00182 * 9 8 6 11 11 N 1.34774 * 120.00239 * 270.00112 * 9 8 6 12 12 C 1.46501 * 120.00149 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47284 * 180.02562 * 12 11 9 14 14 H 1.08998 * 115.51831 * 29.58431 * 13 12 11 15 15 C 1.53000 * 117.44366 * 244.23821 * 13 12 11 16 16 H 1.08997 * 119.53583 * 4.11689 * 15 13 12 17 17 C 1.54388 * 118.12475 * 160.80954 * 15 13 12 18 18 N 1.48146 * 104.61722 * 87.19188 * 17 15 13 19 19 C 1.36932 * 127.83780 * 140.41897 * 18 17 15 20 20 H 1.08005 * 120.00130 * 344.90814 * 19 18 17 21 21 C 1.38813 * 120.00085 * 164.90495 * 19 18 17 22 22 N 1.31612 * 120.00020 * 350.66900 * 21 19 18 23 23 Si 1.86804 * 120.00054 * 170.66275 * 21 19 18 24 24 H 1.48503 * 109.46711 * 60.00204 * 23 21 19 25 25 H 1.48498 * 109.47253 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46875 * 300.00579 * 23 21 19 27 27 C 1.51829 * 104.54946 * 320.13741 * 18 17 15 28 28 C 1.53003 * 117.44331 * 174.99534 * 13 12 11 29 29 H 1.08996 * 119.54029 * 355.88990 * 28 13 12 30 30 H 1.09005 * 109.47460 * 270.21193 * 1 2 3 31 31 H 1.08997 * 109.47108 * 30.21848 * 1 2 3 32 32 H 1.09006 * 109.47177 * 150.21451 * 1 2 3 33 33 H 1.07999 * 119.92731 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.85387 * 179.72198 * 4 3 2 35 35 H 1.07995 * 119.92552 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47492 * 270.02334 * 7 6 5 37 37 H 1.09001 * 109.47423 * 30.02282 * 7 6 5 38 38 H 1.09003 * 109.47382 * 150.02764 * 7 6 5 39 39 H 0.96994 * 119.99573 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.46993 * 59.99807 * 12 11 9 41 41 H 1.09005 * 109.46934 * 299.99873 * 12 11 9 42 42 H 1.08996 * 110.40822 * 205.97688 * 17 15 13 43 43 H 1.09003 * 110.40779 * 328.40537 * 17 15 13 44 44 H 0.97005 * 120.00134 * 179.97438 * 22 21 19 45 45 H 1.09004 * 111.95680 * 281.19602 * 27 18 17 46 46 H 1.09004 * 110.52722 * 157.60063 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2813 0.0017 -0.0062 6 6 3.6022 -1.1990 -0.0013 7 6 4.3656 -2.4983 -0.0023 8 6 2.2064 -1.2078 0.0046 9 6 1.4721 -2.4911 0.0093 10 8 1.1746 -3.0172 1.0640 11 7 1.1325 -3.0775 -1.1557 12 6 0.4043 -4.3487 -1.1510 13 6 0.1456 -4.7936 -2.5917 14 1 0.8874 -4.4722 -3.3228 15 6 -1.3105 -4.8733 -3.0544 16 1 -2.1062 -4.5522 -2.3823 17 6 -1.5930 -4.8716 -4.5722 18 7 -1.5088 -6.2962 -4.9698 19 6 -2.3044 -6.9687 -5.8585 20 1 -3.2426 -6.5383 -6.1764 21 6 -1.9052 -8.2037 -6.3509 22 7 -0.6885 -8.6452 -6.1122 23 14 -3.0949 -9.2390 -7.3520 24 1 -3.5076 -8.4861 -8.5637 25 1 -2.4306 -10.5039 -7.7570 26 1 -4.2923 -9.5502 -6.5308 27 6 -0.3365 -6.8450 -4.1763 28 6 -0.5030 -6.1634 -2.8011 29 1 -0.6974 -6.8032 -1.9403 30 1 -0.3634 0.0038 1.0277 31 1 -0.3633 0.8880 -0.5172 32 1 -0.3634 -0.8919 -0.5105 33 1 1.6583 2.1292 0.0004 34 1 4.1183 2.1329 -0.0103 35 1 5.3612 0.0100 -0.0103 36 1 4.5457 -2.8132 -1.0301 37 1 5.3190 -2.3601 0.5077 38 1 3.7842 -3.2617 0.5149 39 1 1.3695 -2.6574 -1.9972 40 1 -0.5465 -4.2209 -0.6335 41 1 0.9981 -5.1056 -0.6385 42 1 -2.5900 -4.4793 -4.7728 43 1 -0.8399 -4.2849 -5.0984 44 1 -0.4096 -9.5083 -6.4560 45 1 0.6204 -6.5729 -4.6219 46 1 -0.4160 -7.9275 -4.0761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978780360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = 38.205361 kcal Electronic energy + Delta-G solvation = -25325.858323 eV Core-core repulsion = 21795.625452 eV Total energy + Delta-G solvation = -3530.232871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.61685 -39.00517 -38.29334 -34.90352 -33.91294 -33.29902 -32.33569 -30.73708 -28.32727 -27.21601 -27.01719 -26.96179 -24.94521 -23.17260 -21.16624 -21.02444 -20.69511 -19.79684 -19.19726 -17.77351 -16.80230 -16.36623 -16.19233 -15.81413 -14.92548 -14.68723 -14.58371 -14.25395 -14.16290 -13.68118 -13.47910 -13.45985 -13.30567 -13.03465 -12.96422 -12.74201 -12.59661 -12.20193 -11.92203 -11.84103 -11.71592 -11.35308 -11.24848 -11.10669 -10.82187 -10.69198 -10.36201 -10.16345 -10.08667 -9.67984 -9.43668 -9.15425 -9.06266 -8.97763 -8.89780 -8.66225 -6.88486 -5.79520 -3.12524 0.85380 1.03402 2.48157 3.05146 3.37682 3.38866 3.43421 3.44469 4.12133 4.40599 4.46196 4.48343 4.56528 4.64676 4.88219 4.95107 5.06617 5.19759 5.25426 5.31565 5.34567 5.35549 5.38388 5.44529 5.49243 5.51273 5.54253 5.72535 5.78677 5.86646 5.89646 5.92918 5.92995 6.10341 6.15642 6.21292 6.23064 6.32035 6.54122 6.61497 6.64853 6.68393 6.89506 7.29701 7.40442 7.50504 7.69306 8.08723 8.14654 9.05947 9.72767 10.49555 11.35436 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.002382 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.028432 B =11753.998105 C =12023.376148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C -0.130 4.130 4 C -0.098 4.098 5 C -0.130 4.130 6 C -0.046 4.046 7 C -0.125 4.125 8 C -0.127 4.127 9 C 0.566 3.434 10 O -0.536 6.536 11 N -0.716 5.716 12 C 0.153 3.847 13 C -0.152 4.152 14 H 0.103 0.897 15 C -0.168 4.168 16 H 0.103 0.897 17 C 0.157 3.843 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.912 3.088 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.184 3.816 28 C -0.160 4.160 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.022 0.978 44 H 0.254 0.746 45 H 0.029 0.971 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 18.858 12.361 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.046 4.046 3 C -0.148 4.148 4 C -0.116 4.116 5 C -0.148 4.148 6 C -0.046 4.046 7 C -0.181 4.181 8 C -0.130 4.130 9 C 0.351 3.649 10 O -0.413 6.413 11 N -0.367 5.367 12 C 0.030 3.970 13 C -0.171 4.171 14 H 0.121 0.879 15 C -0.188 4.188 16 H 0.121 0.879 17 C 0.031 3.969 18 N -0.324 5.324 19 C -0.354 4.354 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.564 5.564 23 Si 0.742 3.258 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.059 3.941 28 C -0.180 4.180 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.888 18.198 12.931 24.029 hybrid contribution -0.417 -0.283 -0.874 1.009 sum 8.471 17.915 12.057 23.197 Atomic orbital electron populations 1.20901 0.90626 1.03343 1.03075 1.19901 0.96162 0.91711 0.96872 1.20959 0.94291 0.97284 1.02219 1.21261 0.94212 0.98124 0.98008 1.20961 0.99996 0.91587 1.02214 1.19900 0.91826 0.96055 0.96860 1.20915 1.00109 0.94056 1.03025 1.19694 0.93513 0.93051 1.06787 1.18238 0.78485 0.84121 0.84024 1.90809 1.54606 1.64753 1.31129 1.46120 1.57914 1.24211 1.08443 1.20920 0.96308 0.84160 0.95585 1.22543 0.96713 1.02501 0.95358 0.87905 1.24002 0.92270 1.03484 0.99087 0.87904 1.21081 0.98339 0.88066 0.89464 1.46086 1.34787 1.03368 1.48178 1.18971 0.98515 1.00492 1.17400 0.90652 1.24859 0.96352 0.99142 1.00020 1.69871 1.16325 1.20496 1.49723 0.86204 0.80061 0.79686 0.79837 1.21045 1.21557 1.21116 1.21715 0.89373 0.99118 0.83863 1.24136 1.03028 0.89087 1.01751 0.87953 0.90491 0.90802 0.91210 0.85505 0.85666 0.85506 0.90385 0.90865 0.91073 0.76196 0.91326 0.91015 0.93201 0.96021 0.93543 0.95252 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.62 36.00 0.35 -0.78 16 2 C -0.05 -0.47 5.91 -104.23 -0.62 -1.08 16 3 C -0.13 -1.08 9.69 -39.64 -0.38 -1.47 16 4 C -0.10 -0.75 10.04 -39.49 -0.40 -1.15 16 5 C -0.13 -1.08 9.69 -39.64 -0.38 -1.47 16 6 C -0.05 -0.47 5.91 -104.23 -0.62 -1.08 16 7 C -0.12 -1.13 9.62 36.00 0.35 -0.79 16 8 C -0.13 -1.47 5.63 -104.96 -0.59 -2.06 16 9 C 0.57 7.54 4.19 -12.33 -0.05 7.48 16 10 O -0.54 -9.13 17.10 5.32 0.09 -9.04 16 11 N -0.72 -8.51 5.55 -61.25 -0.34 -8.85 16 12 C 0.15 2.04 5.95 -4.04 -0.02 2.02 16 13 C -0.15 -2.27 5.38 -90.62 -0.49 -2.76 16 14 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 15 C -0.17 -2.90 6.74 -89.22 -0.60 -3.51 16 16 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 17 C 0.16 3.22 7.05 -2.41 -0.02 3.21 16 18 N -0.60 -15.22 3.45 -165.70 -0.57 -15.79 16 19 C -0.23 -6.27 10.36 -15.06 -0.16 -6.42 16 20 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 21 C -0.01 -0.19 5.41 -17.43 -0.09 -0.29 16 22 N -0.92 -26.71 10.84 55.49 0.60 -26.11 16 23 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 C 0.18 4.32 5.92 -0.29 0.00 4.32 16 28 C -0.16 -2.95 6.76 -89.22 -0.60 -3.55 16 29 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 39 H 0.40 4.10 8.39 -40.82 -0.34 3.76 16 40 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.39 6.58 -51.93 -0.34 2.05 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -32.31 378.44 -11.16 -43.47 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.29 Total: 3.12 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -4.33 Total: -9.36 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.31 Total: -50.75 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.31 -11.16 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978780360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.677 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds