Wall clock time and date at job start Tue Mar 31 2020 10:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37957 * 120.07389 * 2 1 4 4 C 1.38362 * 120.14417 * 180.27848 * 3 2 1 5 5 C 1.38360 * 120.29414 * 359.73690 * 4 3 2 6 6 C 1.37953 * 120.14412 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.07352 * 179.97438 * 6 5 4 8 8 C 1.39577 * 119.85281 * 359.97438 * 6 5 4 9 9 C 1.47849 * 120.14321 * 179.97438 * 8 6 5 10 10 O 1.21557 * 119.99720 * 90.00182 * 9 8 6 11 11 N 1.34774 * 120.00239 * 270.00112 * 9 8 6 12 12 C 1.46501 * 120.00149 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47284 * 180.02562 * 12 11 9 14 14 H 1.08998 * 115.51831 * 29.58431 * 13 12 11 15 15 C 1.53000 * 117.44366 * 244.23821 * 13 12 11 16 16 H 1.08997 * 119.53583 * 4.11689 * 15 13 12 17 17 C 1.54388 * 118.12475 * 160.80954 * 15 13 12 18 18 N 1.48146 * 104.61722 * 87.19188 * 17 15 13 19 19 C 1.36932 * 127.83780 * 140.41897 * 18 17 15 20 20 H 1.08005 * 120.00130 * 344.90814 * 19 18 17 21 21 C 1.38813 * 120.00085 * 164.90495 * 19 18 17 22 22 N 1.31612 * 120.00020 * 350.66900 * 21 19 18 23 23 Si 1.86804 * 120.00054 * 170.66275 * 21 19 18 24 24 H 1.48503 * 109.46711 * 60.00204 * 23 21 19 25 25 H 1.48498 * 109.47253 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46875 * 300.00579 * 23 21 19 27 27 C 1.51829 * 104.54946 * 320.13741 * 18 17 15 28 28 C 1.53003 * 117.44331 * 174.99534 * 13 12 11 29 29 H 1.08996 * 119.54029 * 355.88990 * 28 13 12 30 30 H 1.09005 * 109.47460 * 270.21193 * 1 2 3 31 31 H 1.08997 * 109.47108 * 30.21848 * 1 2 3 32 32 H 1.09006 * 109.47177 * 150.21451 * 1 2 3 33 33 H 1.07999 * 119.92731 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.85387 * 179.72198 * 4 3 2 35 35 H 1.07995 * 119.92552 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47492 * 270.02334 * 7 6 5 37 37 H 1.09001 * 109.47423 * 30.02282 * 7 6 5 38 38 H 1.09003 * 109.47382 * 150.02764 * 7 6 5 39 39 H 0.96994 * 119.99573 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.46993 * 59.99807 * 12 11 9 41 41 H 1.09005 * 109.46934 * 299.99873 * 12 11 9 42 42 H 1.08996 * 110.40822 * 205.97688 * 17 15 13 43 43 H 1.09003 * 110.40779 * 328.40537 * 17 15 13 44 44 H 0.97005 * 120.00134 * 179.97438 * 22 21 19 45 45 H 1.09004 * 111.95680 * 281.19602 * 27 18 17 46 46 H 1.09004 * 110.52722 * 157.60063 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2813 0.0017 -0.0062 6 6 3.6022 -1.1990 -0.0013 7 6 4.3656 -2.4983 -0.0023 8 6 2.2064 -1.2078 0.0046 9 6 1.4721 -2.4911 0.0093 10 8 1.1746 -3.0172 1.0640 11 7 1.1325 -3.0775 -1.1557 12 6 0.4043 -4.3487 -1.1510 13 6 0.1456 -4.7936 -2.5917 14 1 0.8874 -4.4722 -3.3228 15 6 -1.3105 -4.8733 -3.0544 16 1 -2.1062 -4.5522 -2.3823 17 6 -1.5930 -4.8716 -4.5722 18 7 -1.5088 -6.2962 -4.9698 19 6 -2.3044 -6.9687 -5.8585 20 1 -3.2426 -6.5383 -6.1764 21 6 -1.9052 -8.2037 -6.3509 22 7 -0.6885 -8.6452 -6.1122 23 14 -3.0949 -9.2390 -7.3520 24 1 -3.5076 -8.4861 -8.5637 25 1 -2.4306 -10.5039 -7.7570 26 1 -4.2923 -9.5502 -6.5308 27 6 -0.3365 -6.8450 -4.1763 28 6 -0.5030 -6.1634 -2.8011 29 1 -0.6974 -6.8032 -1.9403 30 1 -0.3634 0.0038 1.0277 31 1 -0.3633 0.8880 -0.5172 32 1 -0.3634 -0.8919 -0.5105 33 1 1.6583 2.1292 0.0004 34 1 4.1183 2.1329 -0.0103 35 1 5.3612 0.0100 -0.0103 36 1 4.5457 -2.8132 -1.0301 37 1 5.3190 -2.3601 0.5077 38 1 3.7842 -3.2617 0.5149 39 1 1.3695 -2.6574 -1.9972 40 1 -0.5465 -4.2209 -0.6335 41 1 0.9981 -5.1056 -0.6385 42 1 -2.5900 -4.4793 -4.7728 43 1 -0.8399 -4.2849 -5.0984 44 1 -0.4096 -9.5083 -6.4560 45 1 0.6204 -6.5729 -4.6219 46 1 -0.4160 -7.9275 -4.0761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978780360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:19 Heat of formation + Delta-G solvation = 19.802737 kcal Electronic energy + Delta-G solvation = -25326.656320 eV Core-core repulsion = 21795.625452 eV Total energy + Delta-G solvation = -3531.030868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51347 -40.34915 -39.33955 -36.27479 -34.97388 -34.58359 -33.17061 -32.47934 -29.37888 -28.86558 -28.33401 -27.60026 -26.57158 -24.10433 -22.82241 -21.89288 -21.69600 -21.01350 -20.75057 -18.86101 -18.63857 -17.33527 -17.15819 -16.80830 -16.48202 -15.95917 -15.74394 -15.37888 -15.18997 -14.86084 -14.70123 -14.54585 -14.34011 -14.16415 -13.99515 -13.92071 -13.64018 -13.35964 -13.17984 -12.91045 -12.88868 -12.68630 -12.57324 -12.42541 -12.35857 -12.02767 -11.99311 -11.96463 -11.68203 -11.18453 -10.90535 -10.71925 -10.56869 -10.12621 -9.77465 -9.55042 -8.91288 -7.90795 -5.25390 0.15946 0.38137 1.46015 1.46709 1.49291 1.55638 2.05921 2.48126 2.69089 2.73971 3.27093 3.55878 3.63626 3.65676 3.80304 3.83686 3.85458 4.04914 4.18267 4.24719 4.37667 4.40289 4.41074 4.51658 4.55518 4.61482 4.66563 4.68848 4.70117 4.75503 4.83334 4.90138 4.93072 5.01905 5.12270 5.16991 5.25283 5.32697 5.39195 5.44600 5.47077 5.50480 5.51316 5.56232 5.66450 5.99851 6.14201 6.42213 6.96554 7.09011 7.66602 8.46608 9.23458 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.002382 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.028432 B =11753.998105 C =12023.376148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 C -0.131 4.131 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.060 4.060 7 C -0.122 4.122 8 C -0.153 4.153 9 C 0.572 3.428 10 O -0.579 6.579 11 N -0.706 5.706 12 C 0.162 3.838 13 C -0.111 4.111 14 H 0.109 0.891 15 C -0.158 4.158 16 H 0.124 0.876 17 C 0.152 3.848 18 N -0.626 5.626 19 C -0.240 4.240 20 H 0.080 0.920 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.279 1.279 27 C 0.188 3.812 28 C -0.173 4.173 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.249 0.751 45 H 0.012 0.988 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 21.544 12.774 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.111 4.111 5 C -0.149 4.149 6 C -0.061 4.061 7 C -0.179 4.179 8 C -0.156 4.156 9 C 0.359 3.641 10 O -0.460 6.460 11 N -0.357 5.357 12 C 0.039 3.961 13 C -0.130 4.130 14 H 0.127 0.873 15 C -0.177 4.177 16 H 0.142 0.858 17 C 0.027 3.973 18 N -0.351 5.351 19 C -0.368 4.368 20 H 0.097 0.903 21 C -0.258 4.258 22 N -0.596 5.596 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.205 1.205 27 C 0.063 3.937 28 C -0.194 4.194 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.258 20.930 13.331 26.486 hybrid contribution -0.482 -1.015 -1.004 1.507 sum 8.776 19.915 12.327 25.012 Atomic orbital electron populations 1.20907 0.90367 1.03682 1.02873 1.20102 0.96617 0.91981 0.97354 1.21288 0.94906 0.97464 1.01249 1.21674 0.94139 0.99154 0.96159 1.21282 1.01283 0.91082 1.01287 1.20097 0.91461 0.97143 0.97397 1.20906 1.00447 0.93173 1.03348 1.19678 0.94184 0.92393 1.09324 1.18541 0.77691 0.84474 0.83359 1.90777 1.56467 1.66100 1.32617 1.45991 1.57299 1.23554 1.08838 1.20726 0.96545 0.84823 0.94008 1.22401 0.95411 0.98811 0.96368 0.87284 1.23932 0.94199 1.02360 0.97225 0.85816 1.21234 0.98913 0.85678 0.91523 1.46420 1.34843 1.05590 1.48287 1.19361 0.99042 1.00973 1.17473 0.90265 1.25691 0.97978 1.00409 1.01688 1.70067 1.18025 1.20511 1.51016 0.85162 0.77959 0.77701 0.78564 1.20057 1.21997 1.20473 1.21453 0.88316 0.97480 0.86410 1.23831 1.05938 0.90185 0.99419 0.87006 0.90993 0.88620 0.92654 0.83125 0.82626 0.83175 0.89695 0.89058 0.93561 0.74971 0.91285 0.91210 0.92537 0.95607 0.94172 0.96996 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.62 71.23 0.69 -1.38 16 2 C -0.06 -1.12 5.91 -19.61 -0.12 -1.24 16 3 C -0.13 -1.81 9.69 22.23 0.22 -1.59 16 4 C -0.09 -1.10 10.04 22.33 0.22 -0.88 16 5 C -0.13 -1.83 9.69 22.23 0.22 -1.61 16 6 C -0.06 -1.14 5.91 -19.61 -0.12 -1.25 16 7 C -0.12 -2.11 9.62 71.23 0.69 -1.43 16 8 C -0.15 -3.38 5.63 -20.09 -0.11 -3.50 16 9 C 0.57 15.07 4.19 86.79 0.36 15.44 16 10 O -0.58 -19.99 17.10 -3.90 -0.07 -20.05 16 11 N -0.71 -16.08 5.55 -465.97 -2.59 -18.66 16 12 C 0.16 4.12 5.95 86.38 0.51 4.64 16 13 C -0.11 -3.15 5.38 -10.80 -0.06 -3.21 16 14 H 0.11 3.05 8.04 -2.39 -0.02 3.03 16 15 C -0.16 -5.19 6.74 -9.88 -0.07 -5.25 16 16 H 0.12 3.63 8.12 -2.39 -0.02 3.61 16 17 C 0.15 6.12 7.05 86.53 0.61 6.73 16 18 N -0.63 -32.23 3.45 -678.15 -2.34 -34.57 16 19 C -0.24 -13.49 10.36 84.03 0.87 -12.62 16 20 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 21 C -0.06 -3.65 5.41 84.86 0.46 -3.19 16 22 N -0.95 -57.00 10.84 21.65 0.23 -56.76 16 23 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.19 9.10 5.92 85.79 0.51 9.61 16 28 C -0.17 -6.36 6.76 -9.88 -0.07 -6.43 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.10 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.05 1.08 7.08 -2.38 -0.02 1.06 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.05 1.02 7.08 -2.39 -0.02 1.01 16 39 H 0.41 7.79 8.39 -92.71 -0.78 7.01 16 40 H 0.07 1.82 7.94 -2.39 -0.02 1.80 16 41 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 45 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.05 3.00 6.58 -2.39 -0.02 2.98 16 Total: -1.00 -72.16 378.44 2.28 -69.88 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.20 Total: 19.67 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 4.81 Total: -7.16 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.69 Total: -110.00 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.07 Total: -20.05 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.16 2.28 -69.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978780360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.681 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds