Wall clock time and date at job start Tue Mar 31 2020 10:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.92770 * 2 1 4 4 C 1.38357 * 120.29407 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.93133 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14184 * 359.96888 * 4 3 2 7 7 C 1.39581 * 119.85773 * 0.02614 * 6 4 3 8 8 C 1.47839 * 120.14539 * 179.97438 * 7 6 4 9 9 O 1.21560 * 120.00318 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99763 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99882 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47371 * 179.97438 * 11 10 8 13 13 H 1.09003 * 115.49087 * 330.38508 * 12 11 10 14 14 C 1.52993 * 117.44610 * 184.99971 * 12 11 10 15 15 H 1.09008 * 119.53961 * 4.11809 * 14 12 11 16 16 C 1.54388 * 118.12572 * 159.21151 * 14 12 11 17 17 N 1.51832 * 102.86402 * 88.02125 * 16 14 12 18 18 C 1.36936 * 127.61302 * 140.55182 * 17 16 14 19 19 H 1.08002 * 120.00206 * 194.65180 * 18 17 16 20 20 C 1.38811 * 119.99685 * 14.64577 * 18 17 16 21 21 N 1.31618 * 120.00278 * 9.01718 * 20 18 17 22 22 Si 1.86801 * 119.99936 * 189.01778 * 20 18 17 23 23 H 1.48497 * 109.47093 * 90.00143 * 22 20 18 24 24 H 1.48499 * 109.47324 * 210.00082 * 22 20 18 25 25 H 1.48497 * 109.47239 * 330.00399 * 22 20 18 26 26 C 1.48148 * 104.54957 * 320.27313 * 17 16 14 27 27 C 1.52997 * 117.43941 * 115.75832 * 12 11 10 28 28 H 1.09000 * 119.54328 * 355.88556 * 27 12 11 29 29 C 1.37959 * 119.92945 * 180.24691 * 2 1 3 30 30 H 1.09005 * 109.46717 * 90.00445 * 1 2 3 31 31 H 1.08995 * 109.47329 * 210.00240 * 1 2 3 32 32 H 1.08999 * 109.47330 * 330.01042 * 1 2 3 33 33 H 1.08004 * 119.85521 * 359.96976 * 3 2 1 34 34 H 1.09006 * 109.46471 * 269.97340 * 5 4 3 35 35 H 1.09000 * 109.46902 * 29.96505 * 5 4 3 36 36 H 1.08996 * 109.47778 * 149.97043 * 5 4 3 37 37 H 1.08010 * 120.07275 * 180.02562 * 6 4 3 38 38 H 0.96990 * 119.99798 * 359.97438 * 10 8 7 39 39 H 1.09008 * 109.47116 * 60.00170 * 11 10 8 40 40 H 1.08998 * 109.47691 * 300.00390 * 11 10 8 41 41 H 1.08996 * 110.41045 * 205.97432 * 16 14 12 42 42 H 1.09003 * 110.40594 * 328.41276 * 16 14 12 43 43 H 0.96997 * 119.99922 * 179.97438 * 21 20 18 44 44 H 1.09007 * 110.40885 * 281.07446 * 26 17 16 45 45 H 1.08998 * 110.40458 * 158.64389 * 26 17 16 46 46 H 1.08007 * 120.07269 * 0.02655 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2079 -0.0005 5 6 4.3244 2.5187 -0.0011 6 6 4.2812 0.0194 -0.0004 7 6 3.5910 -1.1939 -0.0003 8 6 4.3351 -2.4713 -0.0008 9 8 5.5507 -2.4667 -0.0008 10 7 3.6657 -3.6411 -0.0012 11 6 4.4030 -4.9070 -0.0011 12 6 3.4133 -6.0738 -0.0010 13 1 2.4575 -5.8782 0.4852 14 6 3.9886 -7.4865 0.1175 15 1 5.0604 -7.6197 0.2649 16 6 3.0537 -8.6146 0.6041 17 7 2.4173 -9.1055 -0.6840 18 6 2.1372 -10.3983 -1.0380 19 1 1.9048 -10.6388 -2.0650 20 6 2.1521 -11.3998 -0.0770 21 7 2.2587 -11.0877 1.1972 22 14 2.0208 -13.1906 -0.5920 23 1 3.3807 -13.7390 -0.8270 24 1 1.3529 -13.9673 0.4831 25 1 1.2247 -13.2892 -1.8416 26 6 2.1622 -7.8735 -1.4662 27 6 3.4072 -6.9933 -1.2238 28 1 4.0458 -6.7590 -2.0755 29 6 2.1953 -1.1956 -0.0052 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8901 0.5137 33 1 1.6537 2.1324 -0.0005 34 1 4.5037 2.8342 -1.0290 35 1 3.7295 3.2741 0.5122 36 1 5.2777 2.3960 0.5128 37 1 5.3613 0.0276 -0.0004 38 1 2.6958 -3.6448 -0.0008 39 1 5.0296 -4.9625 0.8892 40 1 5.0303 -4.9623 -0.8907 41 1 3.6312 -9.4113 1.0729 42 1 2.3130 -8.2207 1.3002 43 1 2.2687 -11.7875 1.8688 44 1 1.2653 -7.3716 -1.1031 45 1 2.0641 -8.1096 -2.5258 46 1 1.6553 -2.1310 -0.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978998630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:24 Heat of formation + Delta-G solvation = 36.956915 kcal Electronic energy + Delta-G solvation = -24750.807174 eV Core-core repulsion = 21220.520167 eV Total energy + Delta-G solvation = -3530.287007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47673 -39.08688 -38.40792 -35.02268 -33.91454 -33.30677 -32.42095 -30.71937 -27.94435 -27.44904 -27.11748 -26.81631 -25.07983 -23.46161 -21.26872 -20.91152 -20.62139 -19.66950 -19.18034 -17.62522 -16.80560 -16.53115 -16.22309 -15.35961 -15.24958 -14.88421 -14.53804 -14.35079 -14.15739 -13.73015 -13.58451 -13.54874 -13.25746 -13.09055 -12.88649 -12.75751 -12.62073 -12.30952 -11.90627 -11.82566 -11.80022 -11.38378 -11.24276 -11.09663 -10.84515 -10.67626 -10.35577 -10.12972 -10.09716 -9.68177 -9.44262 -9.19710 -9.12552 -8.93448 -8.91172 -8.66217 -6.88512 -5.79295 -3.12547 0.59504 1.01130 2.68435 3.04706 3.38415 3.43655 3.45391 3.58332 4.12774 4.36798 4.39550 4.44291 4.47124 4.79017 4.88226 4.91801 4.97128 5.11077 5.18919 5.24262 5.26874 5.28695 5.35846 5.42372 5.45529 5.49679 5.50741 5.68933 5.73631 5.79442 5.88209 5.90416 5.93796 6.02277 6.14689 6.20824 6.22031 6.33010 6.54421 6.59130 6.64945 6.68625 6.89869 7.30109 7.42589 7.51233 7.69977 8.11318 8.14834 9.06175 9.72819 10.49484 11.35591 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.002167 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.463802 B =12916.521280 C =13523.131553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.099 4.099 4 C -0.092 4.092 5 C -0.114 4.114 6 C -0.068 4.068 7 C -0.123 4.123 8 C 0.555 3.445 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.154 3.846 12 C -0.153 4.153 13 H 0.103 0.897 14 C -0.160 4.160 15 H 0.103 0.897 16 C 0.183 3.817 17 N -0.600 5.600 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.157 3.843 27 C -0.169 4.169 28 H 0.103 0.897 29 C -0.092 4.092 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.254 0.746 44 H 0.022 0.978 45 H 0.050 0.950 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 26.371 -1.522 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.171 4.171 6 C -0.086 4.086 7 C -0.126 4.126 8 C 0.343 3.657 9 O -0.419 6.419 10 N -0.369 5.369 11 C 0.031 3.969 12 C -0.172 4.172 13 H 0.121 0.879 14 C -0.180 4.180 15 H 0.121 0.879 16 C 0.059 3.941 17 N -0.325 5.325 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.031 3.969 27 C -0.189 4.189 28 H 0.121 0.879 29 C -0.111 4.111 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.237 0.763 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.075 26.043 -1.446 26.083 hybrid contribution -0.524 -0.986 -0.219 1.138 sum -0.449 25.057 -1.665 25.116 Atomic orbital electron populations 1.20819 0.90578 1.03160 1.02685 1.19851 0.96414 0.92733 0.99934 1.21117 0.93521 0.97721 0.99327 1.19888 0.93779 0.95366 1.00186 1.20801 1.00140 0.93547 1.02585 1.21144 1.00653 0.90353 0.96492 1.19949 0.93600 0.93640 1.05435 1.18267 0.87239 0.83697 0.76538 1.90771 1.13439 1.87659 1.50034 1.45966 1.10616 1.05681 1.74670 1.20912 0.93419 0.80264 1.02270 1.22547 1.00243 0.90973 1.03431 0.87947 1.24140 1.00128 0.92610 1.01119 0.87920 1.21727 0.92390 0.91934 0.88053 1.46104 1.69873 1.00531 1.15963 1.19024 1.41200 0.81723 0.93287 0.90574 1.24868 1.02075 0.98377 0.95152 1.69879 1.56077 1.31441 0.99025 0.86112 0.77666 0.84594 0.77351 1.21537 1.21693 1.20604 1.21085 0.92373 0.87608 0.95883 1.24007 1.02187 1.01311 0.91354 0.87869 1.21214 0.92856 0.98198 0.98846 0.90873 0.91117 0.91374 0.85689 0.90957 0.91387 0.91215 0.84715 0.76345 0.90951 0.91250 0.89050 0.95250 0.93597 0.96017 0.93179 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.09 -0.72 5.87 -104.68 -0.61 -1.34 16 3 C -0.10 -0.77 9.34 -39.49 -0.37 -1.13 16 4 C -0.09 -0.79 5.87 -104.68 -0.61 -1.40 16 5 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 6 C -0.07 -0.72 9.24 -39.18 -0.36 -1.08 16 7 C -0.12 -1.40 5.87 -104.97 -0.62 -2.02 16 8 C 0.56 7.59 7.77 -12.33 -0.10 7.49 16 9 O -0.54 -9.22 16.35 5.31 0.09 -9.13 16 10 N -0.72 -8.77 5.51 -61.25 -0.34 -9.10 16 11 C 0.15 2.12 5.95 -4.04 -0.02 2.10 16 12 C -0.15 -2.32 5.38 -90.62 -0.49 -2.81 16 13 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 14 C -0.16 -2.98 6.76 -89.22 -0.60 -3.59 16 15 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 16 C 0.18 4.33 5.92 -0.29 0.00 4.33 16 17 N -0.60 -15.29 3.45 -165.70 -0.57 -15.86 16 18 C -0.22 -6.24 10.36 -15.06 -0.16 -6.39 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 21 N -0.92 -26.78 10.82 55.49 0.60 -26.18 16 22 Si 0.91 21.96 29.56 -169.99 -5.03 16.94 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.16 3.24 7.05 -2.41 -0.02 3.22 16 27 C -0.17 -2.94 6.74 -89.22 -0.60 -3.54 16 28 H 0.10 1.68 8.12 -51.93 -0.42 1.26 16 29 C -0.09 -0.86 9.19 -39.19 -0.36 -1.22 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.31 8.08 -51.93 -0.42 -0.10 16 36 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.13 1.46 7.65 -52.48 -0.40 1.06 16 38 H 0.40 3.97 6.44 -40.82 -0.26 3.71 16 39 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 40 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 41 H 0.09 2.42 6.56 -51.93 -0.34 2.08 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.13 0.95 6.41 -52.48 -0.34 0.62 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.52 378.49 -11.04 -43.57 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.20 Total: 2.38 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -4.30 Total: -8.32 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.31 Total: -51.14 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.52 -11.04 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978998630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.523 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds