Wall clock time and date at job start Tue Mar 31 2020 10:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.92770 * 2 1 4 4 C 1.38357 * 120.29407 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.93133 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14184 * 359.96888 * 4 3 2 7 7 C 1.39581 * 119.85773 * 0.02614 * 6 4 3 8 8 C 1.47839 * 120.14539 * 179.97438 * 7 6 4 9 9 O 1.21560 * 120.00318 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99763 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99882 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47371 * 179.97438 * 11 10 8 13 13 H 1.09003 * 115.49087 * 330.38508 * 12 11 10 14 14 C 1.52993 * 117.44610 * 184.99971 * 12 11 10 15 15 H 1.09008 * 119.53961 * 4.11809 * 14 12 11 16 16 C 1.54388 * 118.12572 * 159.21151 * 14 12 11 17 17 N 1.51832 * 102.86402 * 88.02125 * 16 14 12 18 18 C 1.36936 * 127.61302 * 140.55182 * 17 16 14 19 19 H 1.08002 * 120.00206 * 194.65180 * 18 17 16 20 20 C 1.38811 * 119.99685 * 14.64577 * 18 17 16 21 21 N 1.31618 * 120.00278 * 9.01718 * 20 18 17 22 22 Si 1.86801 * 119.99936 * 189.01778 * 20 18 17 23 23 H 1.48497 * 109.47093 * 90.00143 * 22 20 18 24 24 H 1.48499 * 109.47324 * 210.00082 * 22 20 18 25 25 H 1.48497 * 109.47239 * 330.00399 * 22 20 18 26 26 C 1.48148 * 104.54957 * 320.27313 * 17 16 14 27 27 C 1.52997 * 117.43941 * 115.75832 * 12 11 10 28 28 H 1.09000 * 119.54328 * 355.88556 * 27 12 11 29 29 C 1.37959 * 119.92945 * 180.24691 * 2 1 3 30 30 H 1.09005 * 109.46717 * 90.00445 * 1 2 3 31 31 H 1.08995 * 109.47329 * 210.00240 * 1 2 3 32 32 H 1.08999 * 109.47330 * 330.01042 * 1 2 3 33 33 H 1.08004 * 119.85521 * 359.96976 * 3 2 1 34 34 H 1.09006 * 109.46471 * 269.97340 * 5 4 3 35 35 H 1.09000 * 109.46902 * 29.96505 * 5 4 3 36 36 H 1.08996 * 109.47778 * 149.97043 * 5 4 3 37 37 H 1.08010 * 120.07275 * 180.02562 * 6 4 3 38 38 H 0.96990 * 119.99798 * 359.97438 * 10 8 7 39 39 H 1.09008 * 109.47116 * 60.00170 * 11 10 8 40 40 H 1.08998 * 109.47691 * 300.00390 * 11 10 8 41 41 H 1.08996 * 110.41045 * 205.97432 * 16 14 12 42 42 H 1.09003 * 110.40594 * 328.41276 * 16 14 12 43 43 H 0.96997 * 119.99922 * 179.97438 * 21 20 18 44 44 H 1.09007 * 110.40885 * 281.07446 * 26 17 16 45 45 H 1.08998 * 110.40458 * 158.64389 * 26 17 16 46 46 H 1.08007 * 120.07269 * 0.02655 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2079 -0.0005 5 6 4.3244 2.5187 -0.0011 6 6 4.2812 0.0194 -0.0004 7 6 3.5910 -1.1939 -0.0003 8 6 4.3351 -2.4713 -0.0008 9 8 5.5507 -2.4667 -0.0008 10 7 3.6657 -3.6411 -0.0012 11 6 4.4030 -4.9070 -0.0011 12 6 3.4133 -6.0738 -0.0010 13 1 2.4575 -5.8782 0.4852 14 6 3.9886 -7.4865 0.1175 15 1 5.0604 -7.6197 0.2649 16 6 3.0537 -8.6146 0.6041 17 7 2.4173 -9.1055 -0.6840 18 6 2.1372 -10.3983 -1.0380 19 1 1.9048 -10.6388 -2.0650 20 6 2.1521 -11.3998 -0.0770 21 7 2.2587 -11.0877 1.1972 22 14 2.0208 -13.1906 -0.5920 23 1 3.3807 -13.7390 -0.8270 24 1 1.3529 -13.9673 0.4831 25 1 1.2247 -13.2892 -1.8416 26 6 2.1622 -7.8735 -1.4662 27 6 3.4072 -6.9933 -1.2238 28 1 4.0458 -6.7590 -2.0755 29 6 2.1953 -1.1956 -0.0052 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8901 0.5137 33 1 1.6537 2.1324 -0.0005 34 1 4.5037 2.8342 -1.0290 35 1 3.7295 3.2741 0.5122 36 1 5.2777 2.3960 0.5128 37 1 5.3613 0.0276 -0.0004 38 1 2.6958 -3.6448 -0.0008 39 1 5.0296 -4.9625 0.8892 40 1 5.0303 -4.9623 -0.8907 41 1 3.6312 -9.4113 1.0729 42 1 2.3130 -8.2207 1.3002 43 1 2.2687 -11.7875 1.8688 44 1 1.2653 -7.3716 -1.1031 45 1 2.0641 -8.1096 -2.5258 46 1 1.6553 -2.1310 -0.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978998630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:23 Heat of formation + Delta-G solvation = 18.832836 kcal Electronic energy + Delta-G solvation = -24751.593093 eV Core-core repulsion = 21220.520167 eV Total energy + Delta-G solvation = -3531.072926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38535 -40.35190 -39.52219 -36.34533 -35.10052 -34.40038 -33.30614 -32.46538 -29.13244 -28.81889 -28.17986 -27.54336 -26.68903 -24.47327 -22.85574 -21.91776 -21.56677 -20.90506 -20.71425 -18.83689 -18.50202 -17.45740 -17.03720 -16.73344 -16.43778 -16.05353 -16.00492 -15.38583 -15.21902 -14.90126 -14.66008 -14.51322 -14.33684 -14.13512 -13.98288 -13.87217 -13.36068 -13.31260 -13.18183 -12.90806 -12.78394 -12.73536 -12.52840 -12.44506 -12.32631 -12.02293 -11.98873 -11.93056 -11.68538 -11.21512 -10.92182 -10.72846 -10.57673 -10.18801 -9.75335 -9.57825 -8.91417 -7.90723 -5.25495 -0.16239 0.35058 1.46056 1.48104 1.56541 1.79001 2.01179 2.47839 2.72237 2.82070 3.26969 3.55197 3.61603 3.64089 3.80017 3.84504 3.84767 4.13154 4.18433 4.24608 4.33192 4.38418 4.40696 4.51278 4.57791 4.63472 4.66897 4.71304 4.82998 4.86802 4.89507 4.93379 4.99745 5.02116 5.15049 5.19355 5.27965 5.32959 5.35887 5.40208 5.44981 5.50581 5.52704 5.58237 5.66873 5.95959 6.14331 6.45214 6.96673 7.10420 7.66527 8.46388 9.23546 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.002167 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.463802 B =12916.521280 C =13523.131553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.096 4.096 4 C -0.095 4.095 5 C -0.114 4.114 6 C -0.087 4.087 7 C -0.144 4.144 8 C 0.555 3.445 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.163 3.837 12 C -0.112 4.112 13 H 0.112 0.888 14 C -0.174 4.174 15 H 0.111 0.889 16 C 0.187 3.813 17 N -0.627 5.627 18 C -0.237 4.237 19 H 0.080 0.920 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.267 1.267 26 C 0.152 3.848 27 C -0.158 4.158 28 H 0.123 0.877 29 C -0.096 4.096 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.013 0.987 43 H 0.249 0.751 44 H 0.029 0.971 45 H 0.056 0.944 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 28.551 -2.521 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.095 4.095 5 C -0.170 4.170 6 C -0.106 4.106 7 C -0.147 4.147 8 C 0.344 3.656 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.039 3.961 12 C -0.131 4.131 13 H 0.130 0.870 14 C -0.195 4.195 15 H 0.129 0.871 16 C 0.063 3.937 17 N -0.352 5.352 18 C -0.366 4.366 19 H 0.098 0.902 20 C -0.259 4.259 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.192 1.192 26 C 0.027 3.973 27 C -0.178 4.178 28 H 0.141 0.859 29 C -0.115 4.115 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.207 28.252 -2.470 28.385 hybrid contribution -0.193 -1.561 0.082 1.575 sum -1.400 26.691 -2.389 26.834 Atomic orbital electron populations 1.20875 0.88698 1.04098 1.03464 1.20195 0.97788 0.92383 0.98827 1.21499 0.93269 0.98868 0.97740 1.20173 0.94459 0.95543 0.99313 1.20857 1.00125 0.92664 1.03363 1.21206 1.00316 0.91256 0.97843 1.19857 0.94496 0.92554 1.07781 1.18656 0.86863 0.84605 0.75508 1.90743 1.15263 1.88253 1.52150 1.45816 1.11221 1.04837 1.74124 1.20719 0.92913 0.80263 1.02200 1.22412 1.00313 0.89510 1.00817 0.87049 1.23840 0.99662 0.93476 1.02494 0.87063 1.21462 0.92289 0.92402 0.87530 1.46438 1.70460 1.01285 1.17032 1.19395 1.40373 0.83247 0.93545 0.90227 1.25698 1.02582 1.02402 0.95235 1.70072 1.57466 1.32205 0.99903 0.85077 0.77520 0.79546 0.77183 1.21429 1.22077 1.19208 1.21244 0.93959 0.86489 0.95652 1.23938 1.00546 1.01372 0.91896 0.85907 1.21403 0.91955 0.99571 0.98556 0.90053 0.90761 0.89958 0.82938 0.90123 0.89568 0.91401 0.86048 0.74822 0.91220 0.91318 0.92739 0.96880 0.94199 0.95366 0.92539 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.24 16 2 C -0.09 -1.25 5.87 -19.90 -0.12 -1.36 16 3 C -0.10 -1.22 9.34 22.33 0.21 -1.01 16 4 C -0.09 -1.47 5.87 -19.90 -0.12 -1.58 16 5 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 6 C -0.09 -1.84 9.24 22.53 0.21 -1.63 16 7 C -0.14 -3.18 5.87 -20.09 -0.12 -3.30 16 8 C 0.55 14.94 7.77 86.78 0.67 15.62 16 9 O -0.58 -20.15 16.35 -3.90 -0.06 -20.21 16 10 N -0.71 -16.22 5.51 -465.96 -2.57 -18.79 16 11 C 0.16 4.21 5.95 86.38 0.51 4.72 16 12 C -0.11 -3.18 5.38 -10.80 -0.06 -3.24 16 13 H 0.11 3.06 8.04 -2.39 -0.02 3.04 16 14 C -0.17 -6.43 6.76 -9.89 -0.07 -6.50 16 15 H 0.11 3.91 8.14 -2.38 -0.02 3.90 16 16 C 0.19 9.09 5.92 85.79 0.51 9.60 16 17 N -0.63 -32.24 3.45 -678.14 -2.34 -34.58 16 18 C -0.24 -13.30 10.36 84.03 0.87 -12.43 16 19 H 0.08 4.29 7.84 -2.91 -0.02 4.26 16 20 C -0.07 -3.75 5.42 84.86 0.46 -3.29 16 21 N -0.95 -57.03 10.82 21.65 0.23 -56.79 16 22 Si 0.98 45.73 29.56 68.60 2.03 47.76 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 C 0.15 6.10 7.05 86.54 0.61 6.71 16 27 C -0.16 -5.22 6.74 -9.89 -0.07 -5.29 16 28 H 0.12 3.65 8.12 -2.39 -0.02 3.63 16 29 C -0.10 -1.60 9.19 22.52 0.21 -1.40 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.09 0.55 8.08 -2.39 -0.02 0.53 16 36 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 37 H 0.12 2.78 7.65 -2.91 -0.02 2.75 16 38 H 0.41 7.26 6.44 -92.72 -0.60 6.67 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 41 H 0.05 3.02 6.56 -2.39 -0.02 3.00 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.14 1.79 6.41 -2.91 -0.02 1.78 16 Total: -1.00 -72.31 378.49 2.82 -69.50 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.38 Total: 18.16 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.14 Total: -5.04 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.67 Total: -110.16 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.31 2.82 -69.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978998630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.331 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds