Wall clock time and date at job start Tue Mar 31 2020 10:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38379 * 119.92881 * 2 1 4 4 C 1.38344 * 120.29535 * 180.02562 * 3 2 1 5 5 C 1.37982 * 120.14274 * 359.97438 * 4 3 2 6 6 C 1.39559 * 119.84983 * 0.02562 * 5 4 3 7 7 C 1.47845 * 120.14248 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00499 * 173.78500 * 7 6 5 9 9 N 1.34783 * 119.99959 * 353.78618 * 7 6 5 10 10 C 1.46498 * 119.99878 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 115.51497 * 29.58291 * 11 10 9 13 13 C 1.52999 * 117.44022 * 244.24210 * 11 10 9 14 14 H 1.09004 * 119.54106 * 4.11732 * 13 11 10 15 15 C 1.54387 * 118.12128 * 160.80980 * 13 11 10 16 16 N 1.48144 * 104.61793 * 87.19274 * 15 13 11 17 17 C 1.36935 * 127.84012 * 140.41925 * 16 15 13 18 18 H 1.07995 * 119.99842 * 345.83927 * 17 16 15 19 19 C 1.38813 * 120.00093 * 165.84255 * 17 16 15 20 20 N 1.31621 * 120.00034 * 350.73664 * 19 17 16 21 21 Si 1.86798 * 119.99953 * 170.74681 * 19 17 16 22 22 H 1.48496 * 109.47460 * 94.84003 * 21 19 17 23 23 H 1.48501 * 109.46720 * 214.83876 * 21 19 17 24 24 H 1.48500 * 109.47028 * 334.83647 * 21 19 17 25 25 C 1.51833 * 104.54710 * 320.13518 * 16 15 13 26 26 C 1.52998 * 117.44019 * 175.00341 * 11 10 9 27 27 H 1.08998 * 119.54057 * 355.87990 * 26 11 10 28 28 C 1.37937 * 119.92693 * 180.27922 * 2 1 3 29 29 C 1.50706 * 120.07572 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46806 * 89.99680 * 1 2 3 31 31 H 1.08997 * 109.46847 * 209.99635 * 1 2 3 32 32 H 1.08997 * 109.46714 * 329.99955 * 1 2 3 33 33 H 1.08002 * 119.85648 * 359.97438 * 3 2 1 34 34 H 1.07990 * 119.93034 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.07285 * 180.02562 * 5 4 3 36 36 H 0.96995 * 119.99614 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.47203 * 60.00644 * 10 9 7 38 38 H 1.08997 * 109.47386 * 300.00244 * 10 9 7 39 39 H 1.09002 * 110.40693 * 205.97747 * 15 13 11 40 40 H 1.09002 * 110.40913 * 328.40132 * 15 13 11 41 41 H 0.96997 * 119.99877 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.22434 * 282.00097 * 25 16 15 43 43 H 1.09006 * 112.25735 * 158.41405 * 25 16 15 44 44 H 1.08999 * 109.46714 * 263.64507 * 29 28 2 45 45 H 1.09002 * 109.46812 * 23.64158 * 29 28 2 46 46 H 1.09000 * 109.47109 * 143.64455 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2813 0.0193 -0.0005 6 6 3.5911 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.7369 -3.5231 0.1128 9 7 5.6770 -2.4695 -0.1280 10 6 6.4143 -3.7354 -0.1280 11 6 7.9102 -3.4543 -0.2841 12 1 8.2537 -2.5020 0.1199 13 6 8.5962 -3.9706 -1.5505 14 1 8.0011 -4.4549 -2.3248 15 6 9.9457 -3.3396 -1.9559 16 7 10.9626 -4.1280 -1.2218 17 6 12.1876 -4.5441 -1.6705 18 1 12.4185 -4.5047 -2.7247 19 6 13.1327 -5.0165 -0.7702 20 7 12.9263 -4.8967 0.5242 21 14 14.6977 -5.8222 -1.3957 22 1 15.7823 -4.8102 -1.4639 23 1 15.0963 -6.9135 -0.4708 24 1 14.4584 -6.3834 -2.7496 25 6 10.3463 -4.3668 0.1451 26 6 8.8652 -4.6460 -0.1897 27 1 8.4704 -5.6333 0.0498 28 6 2.1952 -1.1954 -0.0058 29 6 1.4417 -2.5006 -0.0116 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1474 -0.0009 35 1 5.3613 0.0276 -0.0005 36 1 6.1545 -1.6301 -0.2185 37 1 6.0723 -4.3551 -0.9569 38 1 6.2394 -4.2578 0.8125 39 1 10.0992 -3.4288 -3.0314 40 1 9.9829 -2.2936 -1.6514 41 1 13.5865 -5.2271 1.1532 42 1 10.4347 -3.4712 0.7600 43 1 10.7889 -5.2233 0.6536 44 1 1.3590 -2.8768 1.0081 45 1 0.4446 -2.3426 -0.4226 46 1 1.9766 -3.2262 -0.6244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979017932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:55 Heat of formation + Delta-G solvation = 45.119179 kcal Electronic energy + Delta-G solvation = -24993.573042 eV Core-core repulsion = 21463.639977 eV Total energy + Delta-G solvation = -3529.933065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62608 -39.05157 -38.35407 -35.13798 -33.80391 -33.09569 -32.37222 -30.76675 -28.43042 -27.17402 -26.95922 -26.68938 -24.94422 -23.29843 -21.36854 -21.00195 -20.59021 -19.73138 -19.18340 -17.63771 -16.80561 -16.43449 -15.99357 -15.57368 -15.25064 -15.00373 -14.61038 -14.37206 -14.19819 -13.70118 -13.43165 -13.28980 -13.16827 -12.89097 -12.79576 -12.67740 -12.56666 -12.19446 -12.01890 -11.92785 -11.80155 -11.24657 -11.17129 -11.11133 -10.82371 -10.67928 -10.35098 -10.13069 -9.79766 -9.68915 -9.41726 -9.20495 -9.11951 -8.92064 -8.82926 -8.66663 -6.88168 -5.78944 -3.11785 0.61693 1.04154 2.71830 3.06474 3.38031 3.43879 3.46013 3.57664 4.12776 4.42021 4.45691 4.48545 4.55845 4.70170 4.87251 4.90771 4.96939 5.23455 5.25918 5.29302 5.35360 5.35702 5.44884 5.48420 5.50342 5.61311 5.67390 5.72953 5.76303 5.88333 5.90579 5.93884 5.99389 6.06144 6.13866 6.21240 6.32530 6.41086 6.55089 6.62769 6.64833 6.68386 6.89765 7.30806 7.44150 7.51247 7.69885 8.13395 8.13683 9.06526 9.73198 10.49625 11.35923 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.002143 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.094104 B =13062.766123 C =13453.219605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.135 4.135 7 C 0.555 3.445 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.155 3.845 11 C -0.153 4.153 12 H 0.102 0.898 13 C -0.169 4.169 14 H 0.103 0.897 15 C 0.158 3.842 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.185 3.815 26 C -0.160 4.160 27 H 0.103 0.897 28 C -0.024 4.024 29 C -0.124 4.124 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.022 0.978 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 11.624 -0.160 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.138 4.138 7 C 0.343 3.657 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.032 3.968 11 C -0.172 4.172 12 H 0.120 0.880 13 C -0.189 4.189 14 H 0.121 0.879 15 C 0.031 3.969 16 N -0.326 5.326 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.060 3.940 26 C -0.180 4.180 27 H 0.121 0.879 28 C -0.025 4.025 29 C -0.180 4.180 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.775 10.730 -0.027 26.084 hybrid contribution 1.193 0.152 -0.286 1.236 sum -22.581 10.882 -0.313 25.068 Atomic orbital electron populations 1.20829 0.90814 1.03032 1.02500 1.19780 0.96370 0.92327 1.01607 1.21224 0.94328 0.97534 0.98060 1.21064 0.94237 0.98047 1.01568 1.21324 0.99889 0.91778 0.97565 1.19815 0.93746 0.93082 1.07124 1.18251 0.82016 0.88765 0.76690 1.90721 1.67843 1.33037 1.49777 1.45986 1.06544 1.10499 1.74016 1.20896 0.88881 0.84853 1.02148 1.22552 0.91488 0.99980 1.03162 0.87967 1.24008 0.99406 1.04755 0.90708 0.87878 1.21074 0.86558 0.93298 0.95952 1.46101 1.15147 1.60451 1.10857 1.19022 0.88255 1.35803 0.92113 0.90608 1.24851 0.98069 1.02214 0.95372 1.69881 1.35777 1.50644 1.00156 0.86109 0.83028 0.78903 0.77761 1.21597 1.21587 1.20570 1.21747 0.84359 1.00439 0.87413 1.24148 0.97616 0.95326 1.00946 0.87930 1.19902 0.92033 0.95734 0.94799 1.21127 0.98904 0.94240 1.03679 0.91051 0.90981 0.91474 0.85695 0.85372 0.85488 0.76404 0.91295 0.90987 0.93172 0.96000 0.93625 0.95531 0.88845 0.90683 0.92224 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.18 36.01 0.33 -0.38 16 2 C -0.10 -0.88 5.87 -104.68 -0.61 -1.50 16 3 C -0.09 -0.72 9.69 -39.49 -0.38 -1.11 16 4 C -0.13 -1.04 10.03 -39.64 -0.40 -1.43 16 5 C -0.09 -0.80 9.53 -39.18 -0.37 -1.17 16 6 C -0.13 -1.53 5.87 -104.97 -0.62 -2.14 16 7 C 0.55 7.34 7.70 -12.33 -0.09 7.25 16 8 O -0.53 -8.47 13.35 5.32 0.07 -8.40 16 9 N -0.72 -8.61 5.51 -61.25 -0.34 -8.95 16 10 C 0.16 2.10 5.95 -4.04 -0.02 2.07 16 11 C -0.15 -2.30 5.38 -90.62 -0.49 -2.79 16 12 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 13 C -0.17 -2.94 6.74 -89.22 -0.60 -3.54 16 14 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 15 C 0.16 3.25 7.05 -2.41 -0.02 3.23 16 16 N -0.60 -15.32 3.45 -165.70 -0.57 -15.89 16 17 C -0.22 -6.23 10.37 -15.06 -0.16 -6.39 16 18 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 19 C -0.01 -0.24 5.43 -17.43 -0.09 -0.33 16 20 N -0.92 -26.79 10.80 55.49 0.60 -26.19 16 21 Si 0.91 21.96 29.56 -169.99 -5.03 16.94 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.18 4.37 5.92 -0.29 0.00 4.36 16 26 C -0.16 -2.98 6.76 -89.22 -0.60 -3.58 16 27 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 28 C -0.02 -0.25 5.91 -104.22 -0.62 -0.87 16 29 C -0.12 -1.28 8.08 36.01 0.29 -0.99 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 6.58 -51.93 -0.34 0.09 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.93 6.45 -52.49 -0.34 0.59 16 36 H 0.40 3.93 6.48 -40.82 -0.26 3.67 16 37 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 2.47 6.57 -51.93 -0.34 2.13 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 46 H 0.10 1.20 5.87 -51.93 -0.30 0.89 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -31.99 369.19 -11.10 -43.09 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.94 Total: 3.15 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -4.46 Total: -9.31 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.31 Total: -51.03 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.99 -11.10 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979017932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.209 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds