Wall clock time and date at job start Tue Mar 31 2020 10:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38379 * 119.92881 * 2 1 4 4 C 1.38344 * 120.29535 * 180.02562 * 3 2 1 5 5 C 1.37982 * 120.14274 * 359.97438 * 4 3 2 6 6 C 1.39559 * 119.84983 * 0.02562 * 5 4 3 7 7 C 1.47845 * 120.14248 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00499 * 173.78500 * 7 6 5 9 9 N 1.34783 * 119.99959 * 353.78618 * 7 6 5 10 10 C 1.46498 * 119.99878 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46932 * 180.02562 * 10 9 7 12 12 H 1.08997 * 115.51497 * 29.58291 * 11 10 9 13 13 C 1.52999 * 117.44022 * 244.24210 * 11 10 9 14 14 H 1.09004 * 119.54106 * 4.11732 * 13 11 10 15 15 C 1.54387 * 118.12128 * 160.80980 * 13 11 10 16 16 N 1.48144 * 104.61793 * 87.19274 * 15 13 11 17 17 C 1.36935 * 127.84012 * 140.41925 * 16 15 13 18 18 H 1.07995 * 119.99842 * 345.83927 * 17 16 15 19 19 C 1.38813 * 120.00093 * 165.84255 * 17 16 15 20 20 N 1.31621 * 120.00034 * 350.73664 * 19 17 16 21 21 Si 1.86798 * 119.99953 * 170.74681 * 19 17 16 22 22 H 1.48496 * 109.47460 * 94.84003 * 21 19 17 23 23 H 1.48501 * 109.46720 * 214.83876 * 21 19 17 24 24 H 1.48500 * 109.47028 * 334.83647 * 21 19 17 25 25 C 1.51833 * 104.54710 * 320.13518 * 16 15 13 26 26 C 1.52998 * 117.44019 * 175.00341 * 11 10 9 27 27 H 1.08998 * 119.54057 * 355.87990 * 26 11 10 28 28 C 1.37937 * 119.92693 * 180.27922 * 2 1 3 29 29 C 1.50706 * 120.07572 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46806 * 89.99680 * 1 2 3 31 31 H 1.08997 * 109.46847 * 209.99635 * 1 2 3 32 32 H 1.08997 * 109.46714 * 329.99955 * 1 2 3 33 33 H 1.08002 * 119.85648 * 359.97438 * 3 2 1 34 34 H 1.07990 * 119.93034 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.07285 * 180.02562 * 5 4 3 36 36 H 0.96995 * 119.99614 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.47203 * 60.00644 * 10 9 7 38 38 H 1.08997 * 109.47386 * 300.00244 * 10 9 7 39 39 H 1.09002 * 110.40693 * 205.97747 * 15 13 11 40 40 H 1.09002 * 110.40913 * 328.40132 * 15 13 11 41 41 H 0.96997 * 119.99877 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.22434 * 282.00097 * 25 16 15 43 43 H 1.09006 * 112.25735 * 158.41405 * 25 16 15 44 44 H 1.08999 * 109.46714 * 263.64507 * 29 28 2 45 45 H 1.09002 * 109.46812 * 23.64158 * 29 28 2 46 46 H 1.09000 * 109.47109 * 143.64455 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2813 0.0193 -0.0005 6 6 3.5911 -1.1936 -0.0005 7 6 4.3352 -2.4712 -0.0011 8 8 3.7369 -3.5231 0.1128 9 7 5.6770 -2.4695 -0.1280 10 6 6.4143 -3.7354 -0.1280 11 6 7.9102 -3.4543 -0.2841 12 1 8.2537 -2.5020 0.1199 13 6 8.5962 -3.9706 -1.5505 14 1 8.0011 -4.4549 -2.3248 15 6 9.9457 -3.3396 -1.9559 16 7 10.9626 -4.1280 -1.2218 17 6 12.1876 -4.5441 -1.6705 18 1 12.4185 -4.5047 -2.7247 19 6 13.1327 -5.0165 -0.7702 20 7 12.9263 -4.8967 0.5242 21 14 14.6977 -5.8222 -1.3957 22 1 15.7823 -4.8102 -1.4639 23 1 15.0963 -6.9135 -0.4708 24 1 14.4584 -6.3834 -2.7496 25 6 10.3463 -4.3668 0.1451 26 6 8.8652 -4.6460 -0.1897 27 1 8.4704 -5.6333 0.0498 28 6 2.1952 -1.1954 -0.0058 29 6 1.4417 -2.5006 -0.0116 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 1.6539 2.1325 -0.0004 34 1 4.1136 2.1474 -0.0009 35 1 5.3613 0.0276 -0.0005 36 1 6.1545 -1.6301 -0.2185 37 1 6.0723 -4.3551 -0.9569 38 1 6.2394 -4.2578 0.8125 39 1 10.0992 -3.4288 -3.0314 40 1 9.9829 -2.2936 -1.6514 41 1 13.5865 -5.2271 1.1532 42 1 10.4347 -3.4712 0.7600 43 1 10.7889 -5.2233 0.6536 44 1 1.3590 -2.8768 1.0081 45 1 0.4446 -2.3426 -0.4226 46 1 1.9766 -3.2262 -0.6244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979017932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:54 Heat of formation + Delta-G solvation = 27.386856 kcal Electronic energy + Delta-G solvation = -24994.341973 eV Core-core repulsion = 21463.639977 eV Total energy + Delta-G solvation = -3530.701996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49017 -40.36749 -39.39627 -36.38090 -35.16705 -34.16358 -33.14791 -32.53061 -29.47204 -28.85423 -28.18679 -27.35022 -26.53163 -24.22979 -22.85050 -22.06306 -21.58520 -20.94340 -20.72271 -18.84276 -18.48436 -17.37617 -16.80419 -16.63009 -16.55285 -16.11174 -16.01843 -15.52713 -15.28423 -14.97742 -14.65492 -14.49809 -14.22742 -14.09592 -13.88735 -13.56771 -13.38824 -13.28015 -13.18554 -12.92002 -12.91006 -12.71219 -12.66861 -12.53047 -12.32624 -12.01931 -11.93753 -11.78548 -11.68760 -11.01027 -10.78006 -10.71194 -10.50298 -10.16089 -9.73232 -9.51375 -8.91296 -7.90557 -5.24953 -0.11368 0.39225 1.45983 1.47408 1.57094 1.85290 2.06029 2.47956 2.73076 2.84371 3.27209 3.56345 3.64351 3.69133 3.83107 3.85147 3.92317 4.10517 4.18333 4.25498 4.28633 4.40165 4.40994 4.54864 4.60934 4.68154 4.71642 4.76951 4.80336 4.85837 4.91514 4.93456 4.98412 5.01655 5.15215 5.22794 5.30853 5.33715 5.39273 5.44912 5.47098 5.50516 5.51790 5.66926 5.67309 5.99956 6.13003 6.50465 6.96840 7.17084 7.66599 8.46384 9.23702 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.002143 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.094104 B =13062.766123 C =13453.219605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.092 4.092 6 C -0.158 4.158 7 C 0.552 3.448 8 O -0.568 6.568 9 N -0.711 5.711 10 C 0.165 3.835 11 C -0.111 4.111 12 H 0.110 0.890 13 C -0.158 4.158 14 H 0.123 0.877 15 C 0.152 3.848 16 N -0.628 5.628 17 C -0.237 4.237 18 H 0.080 0.920 19 C -0.066 4.066 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.188 3.812 26 C -0.175 4.175 27 H 0.112 0.888 28 C -0.046 4.046 29 C -0.117 4.117 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.412 0.588 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.249 0.751 42 H 0.010 0.990 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.250 13.633 -1.096 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.110 4.110 6 C -0.161 4.161 7 C 0.342 3.658 8 O -0.450 6.450 9 N -0.363 5.363 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.128 0.872 13 C -0.178 4.178 14 H 0.141 0.859 15 C 0.027 3.973 16 N -0.353 5.353 17 C -0.366 4.366 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.064 3.936 26 C -0.195 4.195 27 H 0.130 0.870 28 C -0.047 4.047 29 C -0.173 4.173 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.394 12.774 -0.989 28.443 hybrid contribution 1.633 -0.365 -0.003 1.673 sum -23.761 12.409 -0.992 26.824 Atomic orbital electron populations 1.20885 0.89129 1.03861 1.03287 1.20091 0.97727 0.91952 1.00906 1.21629 0.94582 0.98270 0.96397 1.21437 0.94600 0.98578 1.00314 1.21553 1.00816 0.91458 0.97203 1.19797 0.94101 0.92805 1.09364 1.18629 0.82114 0.89216 0.75883 1.90709 1.68502 1.34386 1.51379 1.45844 1.06324 1.10447 1.73734 1.20684 0.87583 0.85591 1.02031 1.22424 0.91725 0.98522 1.00357 0.87162 1.23935 0.98469 1.04354 0.91043 0.85914 1.21233 0.86933 0.93201 0.95932 1.46442 1.15474 1.61471 1.11923 1.19397 0.89406 1.35309 0.92444 0.90269 1.25685 1.01335 1.03323 0.95624 1.70075 1.36611 1.51828 1.01163 0.85070 0.79195 0.77641 0.77448 1.21272 1.22008 1.19381 1.21480 0.87332 0.98107 0.86660 1.23844 0.95601 0.97411 1.02636 0.87044 1.20075 0.92141 0.96461 0.96014 1.21014 0.99711 0.93923 1.02696 0.90182 0.91124 0.89740 0.82872 0.82754 0.83951 0.75005 0.91367 0.91262 0.92554 0.95403 0.94204 0.97234 0.92446 0.91650 0.90231 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.18 71.24 0.65 -0.49 16 2 C -0.11 -1.64 5.87 -19.90 -0.12 -1.76 16 3 C -0.09 -1.11 9.69 22.33 0.22 -0.90 16 4 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 5 C -0.09 -1.48 9.53 22.53 0.21 -1.27 16 6 C -0.16 -3.43 5.87 -20.09 -0.12 -3.54 16 7 C 0.55 14.34 7.70 86.79 0.67 15.01 16 8 O -0.57 -18.26 13.35 -3.88 -0.05 -18.32 16 9 N -0.71 -15.98 5.51 -465.96 -2.57 -18.54 16 10 C 0.16 4.19 5.95 86.38 0.51 4.70 16 11 C -0.11 -3.16 5.38 -10.79 -0.06 -3.22 16 12 H 0.11 3.04 8.04 -2.39 -0.02 3.02 16 13 C -0.16 -5.24 6.74 -9.89 -0.07 -5.31 16 14 H 0.12 3.65 8.12 -2.38 -0.02 3.63 16 15 C 0.15 6.14 7.05 86.53 0.61 6.75 16 16 N -0.63 -32.37 3.45 -678.16 -2.34 -34.71 16 17 C -0.24 -13.33 10.37 84.03 0.87 -12.46 16 18 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 19 C -0.07 -3.79 5.43 84.86 0.46 -3.33 16 20 N -0.95 -57.09 10.80 21.65 0.23 -56.86 16 21 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.19 9.16 5.92 85.79 0.51 9.66 16 26 C -0.17 -6.43 6.76 -9.89 -0.07 -6.50 16 27 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 28 C -0.05 -0.95 5.91 -19.61 -0.12 -1.06 16 29 C -0.12 -2.46 8.08 71.24 0.58 -1.88 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.72 6.58 -2.39 -0.02 0.70 16 32 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 33 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.15 1.11 8.06 -2.92 -0.02 1.08 16 35 H 0.14 1.71 6.45 -2.91 -0.02 1.69 16 36 H 0.41 7.19 6.48 -92.71 -0.60 6.59 16 37 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 3.18 6.57 -2.38 -0.02 3.16 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.25 6.35 -2.39 -0.02 1.23 16 46 H 0.07 1.85 5.87 -2.39 -0.01 1.84 16 Total: -1.00 -71.35 369.19 2.66 -68.69 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.39 Total: 18.96 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.97 Total: -7.03 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.67 Total: -110.11 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.35 2.66 -68.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979017932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.075 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds