Wall clock time and date at job start Tue Mar 31 2020 10:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38380 * 119.85290 * 2 1 4 4 C 1.37941 * 120.14280 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.85451 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14178 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99751 * 173.75269 * 6 5 4 8 8 N 1.34770 * 120.00235 * 353.76658 * 6 5 4 9 9 C 1.46498 * 120.00197 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47147 * 179.97438 * 9 8 6 11 11 H 1.08996 * 115.51636 * 29.58832 * 10 9 8 12 12 C 1.53000 * 117.40697 * 244.22004 * 10 9 8 13 13 H 1.09002 * 119.54051 * 4.10800 * 12 10 9 14 14 C 1.54385 * 118.12168 * 160.79577 * 12 10 9 15 15 N 1.48150 * 104.62021 * 87.19488 * 14 12 10 16 16 C 1.36934 * 127.84098 * 140.41098 * 15 14 12 17 17 H 1.08003 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00234 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00167 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47007 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47036 * 120.00252 * 20 18 16 23 23 H 1.48500 * 109.46970 * 240.00268 * 20 18 16 24 24 C 1.51828 * 104.54623 * 320.13995 * 15 14 12 25 25 C 1.53007 * 117.44030 * 174.99365 * 10 9 8 26 26 H 1.08996 * 119.53867 * 355.84185 * 25 10 9 27 27 C 1.39559 * 119.71198 * 0.25761 * 5 4 3 28 28 C 1.50695 * 120.07212 * 179.74512 * 27 5 4 29 29 C 1.37973 * 119.84902 * 359.48571 * 27 5 4 30 30 H 1.09000 * 109.46798 * 90.00110 * 1 2 3 31 31 H 1.09000 * 109.47297 * 209.99520 * 1 2 3 32 32 H 1.08999 * 109.47341 * 330.00141 * 1 2 3 33 33 H 1.08000 * 119.92693 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.07008 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99851 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47231 * 59.98972 * 9 8 6 37 37 H 1.09002 * 109.46835 * 299.99296 * 9 8 6 38 38 H 1.09001 * 110.40743 * 205.97260 * 14 12 10 39 39 H 1.08996 * 110.40999 * 328.40884 * 14 12 10 40 40 H 0.96999 * 120.00449 * 179.97438 * 19 18 16 41 41 H 1.09006 * 110.21969 * 281.99885 * 24 15 14 42 42 H 1.09005 * 112.25878 * 158.41250 * 24 15 14 43 43 H 1.09005 * 109.46753 * 83.40842 * 28 27 5 44 44 H 1.08997 * 109.46754 * 203.40549 * 28 27 5 45 45 H 1.09005 * 109.47242 * 323.40478 * 28 27 5 46 46 H 1.08003 * 119.92970 * 180.25558 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0000 0.0005 7 8 6.3625 -1.0464 0.1151 8 7 6.4285 1.1603 -0.1262 9 6 7.8935 1.1604 -0.1256 10 6 8.4035 2.5943 -0.2830 11 1 7.7533 3.3707 0.1200 12 6 9.1956 2.9250 -1.5495 13 1 9.3150 2.1657 -2.3224 14 6 9.3298 4.4079 -1.9574 15 7 10.5224 4.8913 -1.2234 16 6 11.4989 5.7395 -1.6730 17 1 11.4483 6.1380 -2.6755 18 6 12.5537 6.0872 -0.8403 19 7 12.6155 5.6012 0.3813 20 14 13.8853 7.2449 -1.4533 21 1 13.5856 7.6482 -2.8508 22 1 13.9286 8.4515 -0.5888 23 1 15.1999 6.5557 -1.4076 24 6 10.4178 4.2408 0.1445 25 6 9.9138 2.8199 -0.1880 26 1 10.5681 1.9823 0.0533 27 6 3.5754 -1.2069 -0.0055 28 6 4.3240 -2.5147 -0.0113 29 6 2.1957 -1.1998 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6522 2.1334 0.0004 34 1 4.1116 2.1445 0.0010 35 1 5.9435 1.9953 -0.2178 36 1 8.2572 0.5527 -0.9542 37 1 8.2565 0.7466 0.8152 38 1 9.4850 4.4938 -3.0329 39 1 8.4446 4.9671 -1.6544 40 1 13.3527 5.8438 0.9632 41 1 9.6880 4.7691 0.7581 42 1 11.3805 4.1932 0.6537 43 1 4.6064 -2.7762 1.0085 44 1 3.6861 -3.2966 -0.4235 45 1 5.2208 -2.4174 -0.6231 46 1 1.6520 -2.1331 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979024547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:59 Heat of formation + Delta-G solvation = 45.275588 kcal Electronic energy + Delta-G solvation = -24912.908169 eV Core-core repulsion = 21382.981886 eV Total energy + Delta-G solvation = -3529.926283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57383 -39.01175 -38.33981 -35.10591 -33.60540 -33.43529 -32.26720 -30.72477 -28.33817 -27.48246 -27.05251 -26.62878 -24.74692 -22.92487 -21.63103 -21.03181 -20.58038 -19.76666 -19.15717 -17.85026 -16.87295 -16.40340 -15.51362 -15.30788 -15.21203 -15.16155 -14.70093 -14.28088 -14.15730 -13.78730 -13.49642 -13.38234 -13.33847 -12.95368 -12.84442 -12.64295 -12.57540 -12.09741 -11.98802 -11.87418 -11.78937 -11.31542 -11.25932 -10.95357 -10.84271 -10.64922 -10.29199 -10.11292 -9.78518 -9.68576 -9.32697 -9.15207 -9.11044 -8.98744 -8.81287 -8.75095 -6.93010 -5.67253 -3.11497 0.60010 1.06782 2.71661 3.09292 3.38407 3.43523 3.46230 3.58444 4.16660 4.39483 4.42723 4.45804 4.56606 4.65697 4.91047 4.94373 5.00248 5.19193 5.25501 5.30257 5.30886 5.38978 5.45584 5.48882 5.53589 5.62122 5.67473 5.68593 5.77731 5.90185 5.93311 5.95792 5.97304 6.03195 6.20378 6.28759 6.32263 6.42097 6.56669 6.62055 6.63778 6.72582 6.91931 7.31306 7.46001 7.53784 7.79332 8.15605 8.27528 9.11515 9.75742 10.47038 11.36093 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002162 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.249060 B =12950.668345 C =13514.620645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.077 4.077 5 C -0.144 4.144 6 C 0.555 3.445 7 O -0.536 6.536 8 N -0.719 5.719 9 C 0.155 3.845 10 C -0.155 4.155 11 H 0.101 0.899 12 C -0.172 4.172 13 H 0.102 0.898 14 C 0.159 3.841 15 N -0.603 5.603 16 C -0.214 4.214 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.154 3.846 25 C -0.153 4.153 26 H 0.102 0.898 27 C -0.019 4.019 28 C -0.122 4.122 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.023 0.977 40 H 0.253 0.747 41 H 0.015 0.985 42 H 0.136 0.864 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.247 -12.247 0.124 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.155 4.155 4 C -0.095 4.095 5 C -0.147 4.147 6 C 0.343 3.657 7 O -0.415 6.415 8 N -0.371 5.371 9 C 0.032 3.968 10 C -0.174 4.174 11 H 0.119 0.881 12 C -0.192 4.192 13 H 0.120 0.880 14 C 0.032 3.968 15 N -0.327 5.327 16 C -0.342 4.342 17 H 0.097 0.903 18 C -0.210 4.210 19 N -0.572 5.572 20 Si 0.748 3.252 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.030 3.970 25 C -0.174 4.174 26 H 0.120 0.880 27 C -0.020 4.020 28 C -0.178 4.178 29 C -0.153 4.153 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.520 -12.815 0.228 25.912 hybrid contribution 0.349 1.042 -0.346 1.152 sum -22.171 -11.773 -0.118 25.103 Atomic orbital electron populations 1.20861 0.90901 1.03081 1.02647 1.20129 0.96296 0.93111 0.96405 1.20959 0.93843 0.97829 1.02829 1.21319 0.94556 0.97007 0.96647 1.19811 0.92889 0.93979 1.08057 1.18253 0.87020 0.83763 0.76674 1.90721 1.70041 1.30850 1.49844 1.45989 1.07869 1.09169 1.74037 1.20901 0.78130 0.95620 1.02134 1.22575 0.96092 0.95527 1.03232 0.88124 1.24004 1.04723 0.99623 0.90813 0.87973 1.21094 0.90446 0.89419 0.95831 1.46170 1.22813 1.53439 1.10280 1.19160 0.99225 1.18100 0.97724 0.90256 1.24763 0.99047 1.01112 0.96114 1.69497 1.32591 1.48044 1.07049 0.85945 0.81547 0.79985 0.77712 1.20550 1.21761 1.21735 1.22572 1.02614 0.84534 0.87287 1.24183 0.90533 1.02190 1.00453 0.87957 1.20048 0.93345 0.94943 0.93622 1.21089 1.00847 0.92089 1.03735 1.20932 0.93161 0.97855 1.03313 0.90765 0.91300 0.91223 0.85439 0.85441 0.76473 0.91333 0.90998 0.93221 0.95952 0.93629 0.96717 0.84717 0.90626 0.92552 0.88549 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.00 0.36 -0.25 16 2 C -0.06 -0.47 5.89 -104.53 -0.62 -1.08 16 3 C -0.14 -1.10 9.68 -39.64 -0.38 -1.49 16 4 C -0.08 -0.71 9.53 -39.18 -0.37 -1.08 16 5 C -0.14 -1.64 5.87 -104.96 -0.62 -2.26 16 6 C 0.55 7.43 7.70 -12.33 -0.09 7.33 16 7 O -0.54 -8.60 13.35 5.32 0.07 -8.53 16 8 N -0.72 -8.75 5.50 -61.25 -0.34 -9.08 16 9 C 0.16 2.15 5.95 -4.04 -0.02 2.12 16 10 C -0.16 -2.39 5.38 -90.62 -0.49 -2.88 16 11 H 0.10 1.51 8.04 -51.93 -0.42 1.10 16 12 C -0.17 -3.06 6.74 -89.22 -0.60 -3.66 16 13 H 0.10 1.71 8.12 -51.93 -0.42 1.29 16 14 C 0.16 3.28 7.05 -2.41 -0.02 3.27 16 15 N -0.60 -15.41 3.46 -165.70 -0.57 -15.99 16 16 C -0.21 -5.94 10.42 -15.06 -0.16 -6.10 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.92 -26.67 10.12 55.49 0.56 -26.11 16 20 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.15 3.68 6.43 -0.29 0.00 3.68 16 25 C -0.15 -2.94 6.76 -89.21 -0.60 -3.54 16 26 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 27 C -0.02 -0.20 5.91 -104.23 -0.62 -0.82 16 28 C -0.12 -1.28 8.73 36.00 0.31 -0.96 16 29 C -0.13 -1.18 9.31 -39.64 -0.37 -1.55 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.93 6.46 -52.49 -0.34 0.59 16 35 H 0.40 3.97 6.48 -40.82 -0.26 3.71 16 36 H 0.07 1.00 7.93 -51.93 -0.41 0.58 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.14 3.64 5.34 -51.93 -0.28 3.36 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.46 8.04 -51.93 -0.42 0.04 16 45 H 0.10 1.21 5.86 -51.93 -0.30 0.91 16 46 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -31.64 371.85 -11.12 -42.77 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.04 Total: 4.17 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.38 Total: -9.79 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.35 Total: -51.18 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.64 -11.12 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979024547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.041 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds