Wall clock time and date at job start Tue Mar 31 2020 10:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38380 * 119.85290 * 2 1 4 4 C 1.37941 * 120.14280 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.85451 * 0.02562 * 4 3 2 6 6 C 1.47850 * 120.14178 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99751 * 173.75269 * 6 5 4 8 8 N 1.34770 * 120.00235 * 353.76658 * 6 5 4 9 9 C 1.46498 * 120.00197 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47147 * 179.97438 * 9 8 6 11 11 H 1.08996 * 115.51636 * 29.58832 * 10 9 8 12 12 C 1.53000 * 117.40697 * 244.22004 * 10 9 8 13 13 H 1.09002 * 119.54051 * 4.10800 * 12 10 9 14 14 C 1.54385 * 118.12168 * 160.79577 * 12 10 9 15 15 N 1.48150 * 104.62021 * 87.19488 * 14 12 10 16 16 C 1.36934 * 127.84098 * 140.41098 * 15 14 12 17 17 H 1.08003 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00234 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00167 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47007 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47036 * 120.00252 * 20 18 16 23 23 H 1.48500 * 109.46970 * 240.00268 * 20 18 16 24 24 C 1.51828 * 104.54623 * 320.13995 * 15 14 12 25 25 C 1.53007 * 117.44030 * 174.99365 * 10 9 8 26 26 H 1.08996 * 119.53867 * 355.84185 * 25 10 9 27 27 C 1.39559 * 119.71198 * 0.25761 * 5 4 3 28 28 C 1.50695 * 120.07212 * 179.74512 * 27 5 4 29 29 C 1.37973 * 119.84902 * 359.48571 * 27 5 4 30 30 H 1.09000 * 109.46798 * 90.00110 * 1 2 3 31 31 H 1.09000 * 109.47297 * 209.99520 * 1 2 3 32 32 H 1.08999 * 109.47341 * 330.00141 * 1 2 3 33 33 H 1.08000 * 119.92693 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.07008 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99851 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.47231 * 59.98972 * 9 8 6 37 37 H 1.09002 * 109.46835 * 299.99296 * 9 8 6 38 38 H 1.09001 * 110.40743 * 205.97260 * 14 12 10 39 39 H 1.08996 * 110.40999 * 328.40884 * 14 12 10 40 40 H 0.96999 * 120.00449 * 179.97438 * 19 18 16 41 41 H 1.09006 * 110.21969 * 281.99885 * 24 15 14 42 42 H 1.09005 * 112.25878 * 158.41250 * 24 15 14 43 43 H 1.09005 * 109.46753 * 83.40842 * 28 27 5 44 44 H 1.08997 * 109.46754 * 203.40549 * 28 27 5 45 45 H 1.09005 * 109.47242 * 323.40478 * 28 27 5 46 46 H 1.08003 * 119.92970 * 180.25558 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2762 0.0000 0.0005 6 6 5.7547 0.0000 0.0005 7 8 6.3625 -1.0464 0.1151 8 7 6.4285 1.1603 -0.1262 9 6 7.8935 1.1604 -0.1256 10 6 8.4035 2.5943 -0.2830 11 1 7.7533 3.3707 0.1200 12 6 9.1956 2.9250 -1.5495 13 1 9.3150 2.1657 -2.3224 14 6 9.3298 4.4079 -1.9574 15 7 10.5224 4.8913 -1.2234 16 6 11.4989 5.7395 -1.6730 17 1 11.4483 6.1380 -2.6755 18 6 12.5537 6.0872 -0.8403 19 7 12.6155 5.6012 0.3813 20 14 13.8853 7.2449 -1.4533 21 1 13.5856 7.6482 -2.8508 22 1 13.9286 8.4515 -0.5888 23 1 15.1999 6.5557 -1.4076 24 6 10.4178 4.2408 0.1445 25 6 9.9138 2.8199 -0.1880 26 1 10.5681 1.9823 0.0533 27 6 3.5754 -1.2069 -0.0055 28 6 4.3240 -2.5147 -0.0113 29 6 2.1957 -1.1998 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6522 2.1334 0.0004 34 1 4.1116 2.1445 0.0010 35 1 5.9435 1.9953 -0.2178 36 1 8.2572 0.5527 -0.9542 37 1 8.2565 0.7466 0.8152 38 1 9.4850 4.4938 -3.0329 39 1 8.4446 4.9671 -1.6544 40 1 13.3527 5.8438 0.9632 41 1 9.6880 4.7691 0.7581 42 1 11.3805 4.1932 0.6537 43 1 4.6064 -2.7762 1.0085 44 1 3.6861 -3.2966 -0.4235 45 1 5.2208 -2.4174 -0.6231 46 1 1.6520 -2.1331 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979024547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:58 Heat of formation + Delta-G solvation = 28.081490 kcal Electronic energy + Delta-G solvation = -24913.653761 eV Core-core repulsion = 21382.981886 eV Total energy + Delta-G solvation = -3530.671875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45911 -40.33840 -39.38457 -36.38908 -35.09713 -34.27709 -33.19195 -32.41267 -29.41622 -28.76650 -28.20286 -27.86291 -26.29151 -23.63713 -22.99896 -22.15607 -21.79627 -20.91988 -20.73014 -18.92326 -18.71384 -17.36362 -16.80685 -16.52958 -16.17549 -15.99947 -15.92382 -15.59365 -15.31262 -14.88999 -14.67512 -14.50110 -14.27517 -14.18386 -14.06546 -13.77559 -13.42676 -13.24987 -13.17246 -12.84497 -12.76770 -12.61782 -12.60327 -12.49077 -12.30256 -11.99994 -11.94051 -11.90184 -11.63781 -11.02623 -10.85044 -10.68974 -10.49487 -10.12769 -9.77975 -9.53856 -8.94910 -7.75793 -5.22862 -0.13685 0.40507 1.47415 1.48343 1.58486 1.83924 2.06995 2.48627 2.74045 2.83451 3.31287 3.57793 3.64952 3.69592 3.81530 3.87150 3.90778 3.99468 4.19414 4.26339 4.37384 4.39345 4.42532 4.59420 4.63342 4.66118 4.71774 4.74476 4.81437 4.82867 4.88428 4.93745 5.02062 5.04368 5.15634 5.23245 5.29606 5.33250 5.34000 5.45069 5.47113 5.50839 5.60241 5.60906 5.80379 5.98079 6.28511 6.51092 7.03125 7.17837 7.70406 8.45359 9.25546 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002162 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.249060 B =12950.668345 C =13514.620645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.078 4.078 5 C -0.168 4.168 6 C 0.552 3.448 7 O -0.570 6.570 8 N -0.711 5.711 9 C 0.164 3.836 10 C -0.111 4.111 11 H 0.112 0.888 12 C -0.163 4.163 13 H 0.119 0.881 14 C 0.153 3.847 15 N -0.629 5.629 16 C -0.228 4.228 17 H 0.083 0.917 18 C -0.073 4.073 19 N -0.950 5.950 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.153 3.847 25 C -0.171 4.171 26 H 0.105 0.895 27 C -0.037 4.037 28 C -0.117 4.117 29 C -0.139 4.139 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.248 0.752 41 H 0.005 0.995 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.026 -12.208 -0.710 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.097 4.097 5 C -0.171 4.171 6 C 0.342 3.658 7 O -0.451 6.451 8 N -0.363 5.363 9 C 0.041 3.959 10 C -0.130 4.130 11 H 0.130 0.870 12 C -0.183 4.183 13 H 0.136 0.864 14 C 0.028 3.972 15 N -0.354 5.354 16 C -0.357 4.357 17 H 0.101 0.899 18 C -0.265 4.265 19 N -0.600 5.600 20 Si 0.811 3.189 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.029 3.971 25 C -0.192 4.192 26 H 0.123 0.877 27 C -0.038 4.038 28 C -0.173 4.173 29 C -0.157 4.157 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.250 0.750 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.345 -12.768 -0.627 28.386 hybrid contribution 1.089 1.026 -0.088 1.499 sum -24.256 -11.742 -0.715 26.958 Atomic orbital electron populations 1.20931 0.88729 1.04162 1.03577 1.20531 0.97914 0.92697 0.94563 1.21316 0.93503 0.99060 1.01888 1.21543 0.95305 0.96809 0.96041 1.19771 0.91585 0.95284 1.10500 1.18638 0.88025 0.83308 0.75842 1.90709 1.70917 1.32026 1.51473 1.45833 1.07040 1.09679 1.73779 1.20676 0.79259 0.94090 1.01897 1.22438 0.93565 0.96724 1.00270 0.86999 1.23946 1.05033 0.98229 0.91061 0.86363 1.21257 0.89094 0.91033 0.95792 1.46496 1.23876 1.53645 1.11404 1.19522 0.99885 1.18305 0.97947 0.89891 1.25610 1.01316 1.03078 0.96485 1.69769 1.33000 1.49227 1.08011 0.84936 0.78509 0.77732 0.77712 1.19098 1.21954 1.22004 1.22298 1.00875 0.87108 0.86775 1.23863 0.93363 0.99615 1.02343 0.87702 1.20207 0.94395 0.94650 0.94565 1.20986 1.00321 0.93159 1.02808 1.21173 0.92379 0.99270 1.02902 0.89739 0.90383 0.90082 0.82985 0.83793 0.75003 0.91607 0.91350 0.92704 0.94852 0.94233 0.97730 0.88049 0.91527 0.90464 0.91004 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.00 71.23 0.71 -0.08 16 2 C -0.06 -0.73 5.89 -19.81 -0.12 -0.85 16 3 C -0.14 -1.84 9.68 22.23 0.22 -1.62 16 4 C -0.08 -1.27 9.53 22.53 0.21 -1.06 16 5 C -0.17 -3.67 5.87 -20.09 -0.12 -3.79 16 6 C 0.55 14.50 7.70 86.79 0.67 15.17 16 7 O -0.57 -18.56 13.35 -3.88 -0.05 -18.62 16 8 N -0.71 -16.20 5.50 -465.98 -2.57 -18.77 16 9 C 0.16 4.31 5.95 86.38 0.51 4.83 16 10 C -0.11 -3.22 5.38 -10.79 -0.06 -3.28 16 11 H 0.11 3.08 8.04 -2.39 -0.02 3.06 16 12 C -0.16 -5.55 6.74 -9.89 -0.07 -5.62 16 13 H 0.12 3.69 8.12 -2.39 -0.02 3.67 16 14 C 0.15 6.19 7.05 86.53 0.61 6.80 16 15 N -0.63 -32.43 3.46 -678.15 -2.35 -34.78 16 16 C -0.23 -12.76 10.42 84.03 0.88 -11.89 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.95 -56.53 10.12 21.65 0.22 -56.31 16 20 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 C 0.15 7.51 6.43 85.79 0.55 8.06 16 25 C -0.17 -6.54 6.76 -9.88 -0.07 -6.61 16 26 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 27 C -0.04 -0.77 5.91 -19.61 -0.12 -0.88 16 28 C -0.12 -2.45 8.73 71.23 0.62 -1.83 16 29 C -0.14 -2.15 9.31 22.23 0.21 -1.94 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 32 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 1.71 6.46 -2.91 -0.02 1.69 16 35 H 0.41 7.22 6.48 -92.71 -0.60 6.62 16 36 H 0.07 1.82 7.93 -2.39 -0.02 1.80 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 42 H 0.10 5.71 5.34 -2.38 -0.01 5.70 16 43 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 45 H 0.07 1.88 5.86 -2.38 -0.01 1.86 16 46 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -70.24 371.85 2.78 -67.46 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.38 Total: 21.53 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.12 Total: -8.27 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.69 Total: -109.86 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.24 2.78 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979024547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.538 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds