Wall clock time and date at job start Tue Mar 31 2020 11:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32685 * 1 3 3 C 1.47670 * 119.99541 * 2 1 4 4 C 1.39707 * 119.99408 * 180.02562 * 3 2 1 5 5 C 1.37605 * 120.00592 * 180.02562 * 4 3 2 6 6 C 1.39741 * 119.99176 * 0.02562 * 5 4 3 7 7 C 1.47696 * 120.00181 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99641 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46974 * 324.99780 * 10 9 7 12 12 C 1.52996 * 109.47032 * 85.00544 * 10 9 7 13 13 C 1.53001 * 109.47264 * 59.99870 * 12 10 9 14 14 C 1.52997 * 109.46925 * 59.99873 * 13 12 10 15 15 C 1.52996 * 109.47389 * 299.99590 * 14 13 12 16 16 H 1.08999 * 109.47454 * 300.00556 * 15 14 13 17 17 N 1.46499 * 109.47169 * 180.02562 * 15 14 13 18 18 C 1.36931 * 120.00122 * 85.00412 * 17 15 14 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.53005 * 109.46896 * 205.00496 * 10 9 7 27 27 C 1.39745 * 119.99554 * 0.25641 * 6 5 4 28 28 C 1.37599 * 119.99101 * 359.46680 * 27 6 5 29 29 H 1.08001 * 120.00029 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99656 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00227 * 180.02562 * 2 1 3 32 32 H 1.07997 * 119.99995 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00233 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99738 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47079 * 179.97438 * 12 10 9 36 36 H 1.09005 * 109.46772 * 299.99592 * 12 10 9 37 37 H 1.08995 * 109.47084 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.46935 * 299.99919 * 13 12 10 39 39 H 1.09001 * 109.46971 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.47276 * 60.00256 * 14 13 12 41 41 H 0.97001 * 119.99790 * 264.99929 * 17 15 14 42 42 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47117 * 180.02562 * 26 10 9 44 44 H 1.09002 * 109.47054 * 59.99578 * 26 10 9 45 45 H 1.07996 * 119.99985 * 179.72361 * 27 6 5 46 46 H 1.08002 * 119.99607 * 180.28082 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2789 -0.0005 5 6 4.1503 2.4705 0.0000 6 6 3.4516 3.6807 0.0016 7 6 4.1900 4.9598 0.0028 8 8 5.4058 4.9598 0.0018 9 7 3.5161 6.1269 0.0038 10 6 4.2486 7.3957 0.0044 11 1 5.1594 7.2890 0.5934 12 6 4.6117 7.7755 -1.4325 13 6 3.3330 7.9252 -2.2592 14 6 2.4561 9.0201 -1.6484 15 6 2.0928 8.6402 -0.2116 16 1 1.5479 7.6962 -0.2120 17 7 1.2527 9.6883 0.3731 18 6 -0.1010 9.6754 0.1667 19 1 -0.5493 8.8922 -0.4267 20 6 -0.8970 10.6687 0.7202 21 7 -0.3507 11.6229 1.4439 22 14 -2.7445 10.6466 0.4452 23 1 -3.3625 11.8035 1.1415 24 1 -3.0294 10.7347 -1.0096 25 1 -3.3103 9.3842 0.9849 26 6 3.3716 8.4906 0.6152 27 6 2.0542 3.6805 0.0081 28 6 1.3664 2.4888 0.0018 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8669 -0.9353 -0.0004 32 1 4.0021 0.3436 -0.0014 33 1 5.2303 2.4704 -0.0008 34 1 2.5461 6.1268 0.0042 35 1 5.1563 8.7197 -1.4321 36 1 5.2366 6.9954 -1.8676 37 1 3.5918 8.1953 -3.2830 38 1 2.7881 6.9812 -2.2596 39 1 1.5449 9.1264 -2.2371 40 1 3.0011 9.9640 -1.6480 41 1 1.6553 10.3914 0.9064 42 1 -0.9070 12.3169 1.8310 43 1 3.9164 9.4347 0.6152 44 1 3.1127 8.2199 1.6389 45 1 1.5141 4.6158 0.0139 46 1 0.2864 2.4886 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981347460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:40 Heat of formation + Delta-G solvation = 6.050747 kcal Electronic energy + Delta-G solvation = -25730.601127 eV Core-core repulsion = 22198.973927 eV Total energy + Delta-G solvation = -3531.627199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47437 -39.11524 -37.73990 -34.52050 -34.45756 -33.11513 -31.35365 -31.14227 -30.21280 -29.08179 -27.85844 -24.58965 -23.71969 -22.91788 -22.13667 -21.41205 -20.93241 -19.89489 -18.81470 -18.22349 -17.11920 -16.58766 -15.59366 -15.53198 -15.10951 -14.98658 -14.80911 -14.42492 -14.23419 -13.79811 -13.61006 -13.55630 -13.35609 -13.06561 -13.00814 -12.53004 -12.43485 -12.07336 -11.85494 -11.73590 -11.59097 -11.13540 -11.02443 -10.89686 -10.78875 -10.64618 -10.39374 -10.24361 -10.18904 -9.88276 -9.76549 -9.54106 -9.24900 -8.97669 -8.86954 -8.48915 -7.00078 -5.80315 -3.09414 0.33672 1.16986 1.98732 2.99184 3.23314 3.40419 3.45099 3.46315 3.78847 4.37355 4.46328 4.53979 4.64917 4.74720 4.89938 5.04107 5.08679 5.10340 5.16377 5.19025 5.40436 5.47515 5.55962 5.57519 5.68148 5.74929 5.75814 5.86155 5.94213 5.97073 6.00710 6.05464 6.09858 6.13910 6.21956 6.27287 6.28922 6.43814 6.48461 6.55596 6.62301 6.68014 6.70374 6.91910 7.06503 7.59493 7.64609 8.25987 8.38054 9.49199 10.06704 10.41228 11.42170 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003533 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.377120 B = 7922.320043 C = 9857.470387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.038 4.038 4 C -0.120 4.120 5 C -0.060 4.060 6 C -0.132 4.132 7 C 0.556 3.444 8 O -0.545 6.545 9 N -0.711 5.711 10 C 0.151 3.849 11 H 0.085 0.915 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.137 4.137 15 C 0.181 3.819 16 H 0.039 0.961 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.134 4.134 27 C -0.081 4.081 28 C -0.122 4.122 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.402 0.598 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -20.276 -4.043 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.038 4.038 4 C -0.138 4.138 5 C -0.079 4.079 6 C -0.136 4.136 7 C 0.344 3.656 8 O -0.424 6.424 9 N -0.364 5.364 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.177 4.177 15 C 0.071 3.929 16 H 0.057 0.943 17 N -0.365 5.365 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.173 4.173 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.148 0.852 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.464 -20.244 -4.051 21.953 hybrid contribution -1.488 0.346 -0.029 1.528 sum 5.976 -19.898 -4.080 21.173 Atomic orbital electron populations 1.24500 0.95705 1.02586 0.97975 1.21832 0.95276 0.95710 1.01443 1.19317 0.93420 0.93251 0.97860 1.21216 0.93153 0.98148 1.01296 1.21195 1.00789 0.90729 0.95139 1.20089 0.93668 0.93876 1.05917 1.18239 0.87231 0.83828 0.76327 1.90747 1.13390 1.87713 1.50526 1.46151 1.10761 1.05456 1.74013 1.20983 0.95353 0.82234 0.96758 0.89680 1.21898 0.97997 1.01477 0.95208 1.21507 0.96028 0.99511 0.98335 1.22287 0.98883 0.97524 0.99030 1.20136 0.89615 0.92500 0.90645 0.94274 1.42409 1.03852 1.29087 1.61110 1.19166 0.83363 1.08017 1.26636 0.91306 1.24737 0.97953 0.97676 1.00463 1.69651 1.34536 1.15376 1.38455 0.86296 0.85569 0.76920 0.77557 1.21695 1.21288 1.21281 1.22142 0.97292 0.97866 0.99998 1.21322 0.93083 0.98735 0.96817 1.21251 1.00296 0.91428 1.00997 0.87738 0.87595 0.86224 0.85256 0.84539 0.76041 0.91074 0.92047 0.92816 0.92685 0.92074 0.92498 0.78225 0.93433 0.90407 0.91187 0.85162 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.15 28.84 0.41 -0.72 16 2 C -0.12 -0.93 9.90 -37.62 -0.37 -1.31 16 3 C -0.04 -0.36 5.87 -104.95 -0.62 -0.98 16 4 C -0.12 -1.13 9.76 -39.26 -0.38 -1.51 16 5 C -0.06 -0.67 9.58 -39.25 -0.38 -1.04 16 6 C -0.13 -1.64 5.88 -104.91 -0.62 -2.25 16 7 C 0.56 8.00 7.73 -12.40 -0.10 7.90 16 8 O -0.54 -9.32 15.99 5.30 0.08 -9.23 16 9 N -0.71 -9.61 4.18 -54.79 -0.23 -9.83 16 10 C 0.15 2.13 2.78 -67.93 -0.19 1.94 16 11 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 12 C -0.13 -1.73 5.60 -26.73 -0.15 -1.88 16 13 C -0.12 -1.62 5.77 -26.73 -0.15 -1.78 16 14 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 15 C 0.18 3.32 2.60 -67.93 -0.18 3.14 16 16 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 17 N -0.72 -17.27 5.12 -53.43 -0.27 -17.54 16 18 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 C -0.13 -2.10 5.08 -26.72 -0.14 -2.24 16 27 C -0.08 -0.88 9.52 -39.25 -0.37 -1.26 16 28 C -0.12 -1.20 9.38 -39.27 -0.37 -1.56 16 29 H 0.10 0.67 6.02 -52.49 -0.32 0.35 16 30 H 0.11 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 34 H 0.40 5.12 4.88 -40.82 -0.20 4.92 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.76 7.60 -51.93 -0.39 0.37 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.13 1.29 6.38 -52.49 -0.34 0.96 16 46 H 0.13 1.06 6.15 -52.49 -0.32 0.73 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.21 371.56 -9.90 -41.11 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.79 Total: 12.93 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.99 Total: -13.02 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.22 Total: -54.23 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.21 -9.90 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981347460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.163 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds