Wall clock time and date at job start Tue Mar 31 2020 11:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32685 * 1 3 3 C 1.47670 * 119.99541 * 2 1 4 4 C 1.39707 * 119.99408 * 180.02562 * 3 2 1 5 5 C 1.37605 * 120.00592 * 180.02562 * 4 3 2 6 6 C 1.39741 * 119.99176 * 0.02562 * 5 4 3 7 7 C 1.47696 * 120.00181 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99753 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99641 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46974 * 324.99780 * 10 9 7 12 12 C 1.52996 * 109.47032 * 85.00544 * 10 9 7 13 13 C 1.53001 * 109.47264 * 59.99870 * 12 10 9 14 14 C 1.52997 * 109.46925 * 59.99873 * 13 12 10 15 15 C 1.52996 * 109.47389 * 299.99590 * 14 13 12 16 16 H 1.08999 * 109.47454 * 300.00556 * 15 14 13 17 17 N 1.46499 * 109.47169 * 180.02562 * 15 14 13 18 18 C 1.36931 * 120.00122 * 85.00412 * 17 15 14 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.53005 * 109.46896 * 205.00496 * 10 9 7 27 27 C 1.39745 * 119.99554 * 0.25641 * 6 5 4 28 28 C 1.37599 * 119.99101 * 359.46680 * 27 6 5 29 29 H 1.08001 * 120.00029 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99656 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00227 * 180.02562 * 2 1 3 32 32 H 1.07997 * 119.99995 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00233 * 180.02562 * 5 4 3 34 34 H 0.97000 * 119.99738 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47079 * 179.97438 * 12 10 9 36 36 H 1.09005 * 109.46772 * 299.99592 * 12 10 9 37 37 H 1.08995 * 109.47084 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.46935 * 299.99919 * 13 12 10 39 39 H 1.09001 * 109.46971 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.47276 * 60.00256 * 14 13 12 41 41 H 0.97001 * 119.99790 * 264.99929 * 17 15 14 42 42 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47117 * 180.02562 * 26 10 9 44 44 H 1.09002 * 109.47054 * 59.99578 * 26 10 9 45 45 H 1.07996 * 119.99985 * 179.72361 * 27 6 5 46 46 H 1.08002 * 119.99607 * 180.28082 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2789 -0.0005 5 6 4.1503 2.4705 0.0000 6 6 3.4516 3.6807 0.0016 7 6 4.1900 4.9598 0.0028 8 8 5.4058 4.9598 0.0018 9 7 3.5161 6.1269 0.0038 10 6 4.2486 7.3957 0.0044 11 1 5.1594 7.2890 0.5934 12 6 4.6117 7.7755 -1.4325 13 6 3.3330 7.9252 -2.2592 14 6 2.4561 9.0201 -1.6484 15 6 2.0928 8.6402 -0.2116 16 1 1.5479 7.6962 -0.2120 17 7 1.2527 9.6883 0.3731 18 6 -0.1010 9.6754 0.1667 19 1 -0.5493 8.8922 -0.4267 20 6 -0.8970 10.6687 0.7202 21 7 -0.3507 11.6229 1.4439 22 14 -2.7445 10.6466 0.4452 23 1 -3.3625 11.8035 1.1415 24 1 -3.0294 10.7347 -1.0096 25 1 -3.3103 9.3842 0.9849 26 6 3.3716 8.4906 0.6152 27 6 2.0542 3.6805 0.0081 28 6 1.3664 2.4888 0.0018 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8669 -0.9353 -0.0004 32 1 4.0021 0.3436 -0.0014 33 1 5.2303 2.4704 -0.0008 34 1 2.5461 6.1268 0.0042 35 1 5.1563 8.7197 -1.4321 36 1 5.2366 6.9954 -1.8676 37 1 3.5918 8.1953 -3.2830 38 1 2.7881 6.9812 -2.2596 39 1 1.5449 9.1264 -2.2371 40 1 3.0011 9.9640 -1.6480 41 1 1.6553 10.3914 0.9064 42 1 -0.9070 12.3169 1.8310 43 1 3.9164 9.4347 0.6152 44 1 3.1127 8.2199 1.6389 45 1 1.5141 4.6158 0.0139 46 1 0.2864 2.4886 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981347460.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:40 Heat of formation + Delta-G solvation = -11.036797 kcal Electronic energy + Delta-G solvation = -25731.342098 eV Core-core repulsion = 22198.973927 eV Total energy + Delta-G solvation = -3532.368171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54310 -40.08636 -38.94322 -36.16126 -35.18343 -34.45869 -32.94803 -32.14090 -31.19078 -30.15501 -29.41656 -25.74085 -25.33701 -23.71288 -23.35449 -22.62670 -22.15167 -20.59719 -20.11004 -19.39363 -18.85725 -17.44667 -16.92871 -16.60040 -16.32860 -16.02165 -15.92177 -15.78300 -15.31833 -15.06407 -15.01400 -14.82006 -14.31771 -14.15215 -13.99819 -13.76010 -13.50830 -13.23597 -13.08956 -13.01752 -12.87681 -12.75634 -12.25976 -12.24057 -12.08317 -11.95117 -11.81598 -11.60354 -11.46847 -11.32662 -11.02960 -11.00622 -10.82825 -10.08658 -10.02760 -9.20651 -8.97918 -7.91430 -5.19489 -0.44721 0.39427 1.28800 1.49018 1.51163 1.57122 2.07857 2.15550 2.58002 2.95916 3.41865 3.57408 3.69391 3.76952 3.86586 3.90259 3.91424 3.95148 4.28810 4.29289 4.33213 4.34221 4.35245 4.46649 4.54594 4.65200 4.71133 4.74241 4.81306 4.92822 4.94654 5.02755 5.08815 5.16892 5.21746 5.24616 5.32293 5.35422 5.36825 5.47976 5.50674 5.55306 5.64962 5.65688 5.81069 5.91959 6.30450 6.49826 7.15724 7.36857 8.13233 8.35821 9.31931 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003533 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.377120 B = 7922.320043 C = 9857.470387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.035 4.035 4 C -0.121 4.121 5 C -0.069 4.069 6 C -0.156 4.156 7 C 0.557 3.443 8 O -0.578 6.578 9 N -0.707 5.707 10 C 0.158 3.842 11 H 0.083 0.917 12 C -0.121 4.121 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.178 3.822 16 H 0.044 0.956 17 N -0.737 5.737 18 C -0.235 4.235 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.300 1.300 24 H -0.279 1.279 25 H -0.276 1.276 26 C -0.122 4.122 27 C -0.084 4.084 28 C -0.131 4.131 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.132 0.868 34 H 0.406 0.594 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.135 0.865 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -22.725 -4.940 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C -0.036 4.036 4 C -0.138 4.138 5 C -0.088 4.088 6 C -0.159 4.159 7 C 0.346 3.654 8 O -0.459 6.459 9 N -0.359 5.359 10 C 0.053 3.947 11 H 0.101 0.899 12 C -0.160 4.160 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.070 3.930 16 H 0.062 0.938 17 N -0.376 5.376 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.621 5.621 22 Si 0.798 3.202 23 H -0.226 1.226 24 H -0.206 1.206 25 H -0.202 1.202 26 C -0.160 4.160 27 C -0.103 4.103 28 C -0.149 4.149 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.150 0.850 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.153 0.847 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.721 -22.739 -4.981 24.229 hybrid contribution -1.269 0.978 0.234 1.619 sum 5.452 -21.760 -4.747 22.930 Atomic orbital electron populations 1.24763 0.95565 1.03597 0.95725 1.21969 0.95699 0.95431 1.02863 1.19646 0.93648 0.94092 0.96174 1.21485 0.93424 0.98439 1.00473 1.21291 1.00783 0.91177 0.95501 1.20007 0.94264 0.93162 1.08475 1.18557 0.86920 0.84518 0.75397 1.90720 1.14761 1.88183 1.52275 1.46097 1.10885 1.05190 1.73766 1.20869 0.94807 0.81909 0.97115 0.89910 1.21852 0.97745 1.01981 0.94401 1.21409 0.95561 0.98402 0.98935 1.22108 0.98567 0.98356 0.97718 1.20352 0.90064 0.91102 0.91524 0.93764 1.42619 1.03662 1.29965 1.61343 1.19572 0.84714 1.07389 1.25062 0.90483 1.25508 1.02096 0.97942 1.01272 1.69812 1.35676 1.16320 1.40333 0.85289 0.80744 0.76725 0.77492 1.22606 1.20575 1.20239 1.21982 0.96239 0.98662 0.99166 1.21404 0.92539 0.99556 0.96787 1.21507 1.01268 0.91238 1.00869 0.87728 0.85680 0.84437 0.82729 0.84974 0.75574 0.90091 0.92004 0.91288 0.92251 0.93916 0.93213 0.79644 0.94200 0.90202 0.91968 0.84720 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 14.15 66.65 0.94 -0.67 16 2 C -0.14 -1.71 9.90 23.59 0.23 -1.48 16 3 C -0.04 -0.59 5.87 -20.08 -0.12 -0.71 16 4 C -0.12 -2.05 9.76 22.48 0.22 -1.83 16 5 C -0.07 -1.50 9.58 22.48 0.22 -1.28 16 6 C -0.16 -3.80 5.88 -20.05 -0.12 -3.92 16 7 C 0.56 15.94 7.73 86.74 0.67 16.61 16 8 O -0.58 -19.88 15.99 -3.96 -0.06 -19.95 16 9 N -0.71 -18.72 4.18 -445.54 -1.86 -20.58 16 10 C 0.16 4.33 2.78 44.99 0.13 4.45 16 11 H 0.08 2.38 7.58 -2.39 -0.02 2.36 16 12 C -0.12 -3.11 5.60 30.59 0.17 -2.94 16 13 C -0.10 -2.77 5.77 30.59 0.18 -2.60 16 14 C -0.13 -4.24 5.50 30.59 0.17 -4.07 16 15 C 0.18 6.44 2.60 44.99 0.12 6.56 16 16 H 0.04 1.57 6.44 -2.39 -0.02 1.55 16 17 N -0.74 -35.36 5.12 -322.94 -1.65 -37.01 16 18 C -0.24 -12.53 9.93 84.03 0.83 -11.69 16 19 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 22 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.12 -3.77 5.08 30.60 0.16 -3.62 16 27 C -0.08 -1.76 9.52 22.48 0.21 -1.54 16 28 C -0.13 -2.35 9.38 22.47 0.21 -2.14 16 29 H 0.10 1.04 6.02 -2.91 -0.02 1.02 16 30 H 0.13 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.13 2.92 7.64 -2.91 -0.02 2.90 16 34 H 0.41 10.05 4.88 -92.71 -0.45 9.60 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.53 7.60 -2.39 -0.02 1.52 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.37 19.46 7.80 -92.71 -0.72 18.73 16 42 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.14 2.56 6.38 -2.91 -0.02 2.54 16 46 H 0.15 2.05 6.15 -2.91 -0.02 2.04 16 Total: -1.00 -67.00 371.56 3.23 -63.76 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.18 Total: 39.59 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.69 Total: -14.66 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -3.23 Total: -115.81 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.95 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.00 3.23 -63.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981347460.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.728 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds