Wall clock time and date at job start Tue Mar 31 2020 11:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47665 * 120.00182 * 2 1 4 4 C 1.39715 * 119.99560 * 359.72741 * 3 2 1 5 5 C 1.37600 * 120.00466 * 179.76225 * 4 3 2 6 6 C 1.39745 * 119.99372 * 0.51087 * 5 4 3 7 7 C 1.47691 * 119.99819 * 179.76669 * 6 5 4 8 8 O 1.21583 * 119.99572 * 179.97438 * 7 6 5 9 9 N 1.34768 * 120.00309 * 359.97438 * 7 6 5 10 10 C 1.46507 * 120.00057 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46897 * 34.99981 * 10 9 7 12 12 C 1.53000 * 109.46759 * 275.00168 * 10 9 7 13 13 C 1.53005 * 109.46575 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47038 * 60.00091 * 13 12 10 15 15 C 1.52993 * 109.47013 * 299.99741 * 14 13 12 16 16 H 1.09002 * 109.47181 * 300.00196 * 15 14 13 17 17 N 1.46501 * 109.47299 * 180.02562 * 15 14 13 18 18 C 1.36934 * 120.00216 * 84.99383 * 17 15 14 19 19 H 1.08001 * 120.00045 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00320 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46938 * 60.00687 * 22 20 18 24 24 H 1.48499 * 109.46705 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47231 * 300.00250 * 22 20 18 26 26 C 1.52995 * 109.46898 * 155.00000 * 10 9 7 27 27 C 1.39738 * 119.99593 * 359.74003 * 6 5 4 28 28 C 1.37608 * 119.99156 * 0.02562 * 27 6 5 29 29 H 1.07999 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99512 * 179.97438 * 1 2 3 31 31 H 1.08009 * 120.00161 * 179.72469 * 2 1 3 32 32 H 1.08000 * 119.99256 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.00106 * 180.25470 * 5 4 3 34 34 H 0.97000 * 120.00331 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47555 * 299.99607 * 12 10 9 36 36 H 1.08998 * 109.47508 * 60.00490 * 12 10 9 37 37 H 1.09002 * 109.46589 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47185 * 299.99877 * 13 12 10 39 39 H 1.09002 * 109.47307 * 59.99860 * 14 13 12 40 40 H 1.08996 * 109.46764 * 179.97438 * 14 13 12 41 41 H 0.96997 * 120.00225 * 265.00634 * 17 15 14 42 42 H 0.96998 * 119.99460 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47415 * 299.99825 * 26 10 9 44 44 H 1.08993 * 109.47201 * 60.00525 * 26 10 9 45 45 H 1.07992 * 120.00608 * 180.02562 * 27 6 5 46 46 H 1.08007 * 119.99259 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 1.3666 2.4887 -0.0058 5 6 2.0544 3.6805 -0.0008 6 6 3.4519 3.6805 -0.0008 7 6 4.1902 4.9596 -0.0007 8 8 5.4060 4.9596 -0.0003 9 7 3.5164 6.1267 -0.0012 10 6 4.2489 7.3955 -0.0016 11 1 5.1596 7.2891 -0.5910 12 6 4.6127 7.7748 1.4353 13 6 5.3783 9.0996 1.4347 14 6 4.5015 10.1950 0.8245 15 6 4.1376 9.8156 -0.6123 16 1 5.0483 9.7087 -1.2016 17 7 3.2986 10.8647 -1.1969 18 6 3.8782 11.9635 -1.7729 19 1 4.9540 12.0565 -1.7967 20 6 3.0833 12.9578 -2.3263 21 7 1.7722 12.8447 -2.2969 22 14 3.8741 14.4563 -3.1128 23 1 4.7431 14.0247 -4.2370 24 1 2.8155 15.3632 -3.6248 25 1 4.6922 15.1724 -2.1014 26 6 3.3716 8.4906 -0.6116 27 6 4.1505 2.4703 -0.0004 28 6 3.4623 1.2787 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8669 -0.9354 0.0045 32 1 0.2866 2.4885 -0.0106 33 1 1.5143 4.6157 -0.0011 34 1 2.5463 6.1268 -0.0011 35 1 3.7021 7.8813 2.0247 36 1 5.2377 6.9947 1.8698 37 1 5.6371 9.3700 2.4584 38 1 6.2890 8.9927 0.8454 39 1 3.5908 10.3018 1.4138 40 1 5.0467 11.1388 0.8245 41 1 2.3325 10.7812 -1.1757 42 1 1.2168 13.5397 -2.6832 43 1 3.1124 8.2204 -1.6352 44 1 2.4610 8.5971 -0.0222 45 1 5.2304 2.4702 0.0000 46 1 4.0022 0.3433 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981347464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:48 Heat of formation + Delta-G solvation = 3.480422 kcal Electronic energy + Delta-G solvation = -25039.677845 eV Core-core repulsion = 21507.939188 eV Total energy + Delta-G solvation = -3531.738657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46518 -39.07266 -37.78612 -34.73440 -34.54795 -33.36716 -31.45582 -31.11755 -30.23853 -28.96248 -27.73308 -24.65082 -23.69717 -23.02490 -22.10287 -21.53400 -20.47040 -19.99747 -19.46765 -18.16125 -17.01734 -16.69851 -16.07582 -15.34939 -15.14638 -15.02338 -14.71492 -14.39080 -14.16927 -13.82669 -13.66123 -13.59726 -13.48152 -13.17079 -13.08848 -12.70955 -12.55225 -12.13301 -12.06264 -11.68945 -11.26350 -10.99337 -10.93022 -10.86549 -10.73880 -10.71941 -10.34790 -10.30632 -10.17195 -10.11067 -9.71514 -9.58719 -9.35694 -9.01850 -8.86217 -8.59071 -6.96190 -5.76707 -3.05252 0.23572 1.06039 1.89203 2.90251 3.10888 3.44606 3.49022 3.49848 3.68846 4.27388 4.34515 4.53317 4.58279 4.64049 4.80511 4.96609 4.99838 5.05741 5.10655 5.30626 5.33383 5.44620 5.51149 5.61000 5.65206 5.69304 5.73894 5.83221 5.88139 5.90704 5.97867 6.02154 6.04429 6.14299 6.14925 6.31018 6.33303 6.33700 6.50780 6.52906 6.56603 6.63445 6.73518 6.97102 7.12874 7.49058 7.70668 8.17634 8.42151 9.53197 10.10437 10.45272 11.45989 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002358 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.008476 B =11873.021743 C =12675.021896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.123 4.123 5 C -0.083 4.083 6 C -0.132 4.132 7 C 0.556 3.444 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.149 3.851 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.129 4.129 27 C -0.059 4.059 28 C -0.118 4.118 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.398 0.602 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.138 0.862 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -25.280 7.525 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.135 4.135 7 C 0.343 3.657 8 O -0.417 6.417 9 N -0.368 5.368 10 C 0.044 3.956 11 H 0.107 0.893 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.364 5.364 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.168 4.168 27 C -0.078 4.078 28 C -0.136 4.136 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.156 0.844 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.559 -25.096 7.418 26.176 hybrid contribution -0.525 0.864 -0.384 1.082 sum -1.084 -24.232 7.034 25.255 Atomic orbital electron populations 1.24484 0.95683 1.02540 0.98104 1.21843 0.95286 0.95746 1.01309 1.19322 0.93434 0.93273 0.97844 1.21230 1.00188 0.91467 1.01208 1.21266 0.93038 0.98569 0.97278 1.20102 0.93683 0.93896 1.05808 1.18241 0.87309 0.83750 0.76421 1.90776 1.13361 1.87601 1.49919 1.46103 1.10339 1.05796 1.74580 1.21067 0.95979 0.81487 0.97027 0.89309 1.21881 1.00441 0.97777 0.96137 1.21489 0.98799 0.94528 1.00503 1.22290 0.99006 0.97719 0.98698 1.20105 0.93780 0.86673 0.92139 0.93332 1.42390 1.05293 1.20219 1.68544 1.19202 0.91601 0.96728 1.29297 0.91192 1.24739 0.95402 0.99015 1.01878 1.69651 1.02551 1.35135 1.50948 0.86273 0.77895 0.82831 0.79234 1.21268 1.21738 1.21280 1.22102 0.98796 0.95026 1.00912 1.21225 1.00924 0.90720 0.94901 1.21243 0.93161 0.98215 1.01026 0.87826 0.87560 0.86169 0.85108 0.85293 0.76693 0.92058 0.92152 0.92491 0.92143 0.92670 0.91874 0.78347 0.93508 0.91279 0.91708 0.84437 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 14.15 28.84 0.41 -0.49 16 2 C -0.12 -0.78 9.90 -37.62 -0.37 -1.16 16 3 C -0.04 -0.31 5.87 -104.95 -0.62 -0.93 16 4 C -0.12 -0.99 9.38 -39.26 -0.37 -1.36 16 5 C -0.08 -0.74 9.52 -39.25 -0.37 -1.12 16 6 C -0.13 -1.47 5.88 -104.91 -0.62 -2.09 16 7 C 0.56 7.57 7.73 -12.40 -0.10 7.47 16 8 O -0.54 -9.15 15.99 5.29 0.08 -9.07 16 9 N -0.72 -8.82 5.03 -54.80 -0.28 -9.09 16 10 C 0.15 2.12 2.45 -67.93 -0.17 1.95 16 11 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 12 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 15 C 0.18 3.56 2.77 -67.91 -0.19 3.38 16 16 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 17 N -0.72 -17.81 5.12 -53.40 -0.27 -18.08 16 18 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.13 -2.05 4.86 -26.71 -0.13 -2.18 16 27 C -0.06 -0.61 9.58 -39.25 -0.38 -0.99 16 28 C -0.12 -1.00 9.76 -39.26 -0.38 -1.38 16 29 H 0.10 0.50 6.02 -52.49 -0.32 0.18 16 30 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 32 H 0.13 0.78 6.15 -52.49 -0.32 0.46 16 33 H 0.13 0.90 6.38 -52.49 -0.34 0.56 16 34 H 0.40 3.89 6.62 -40.82 -0.27 3.62 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.14 1.43 7.64 -52.49 -0.40 1.03 16 46 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -32.34 375.99 -10.05 -42.39 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.97 Total: 10.41 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.98 Total: -12.31 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.18 Total: -54.46 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.34 -10.05 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981347464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.870 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds