Wall clock time and date at job start Tue Mar 31 2020 11:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47665 * 120.00182 * 2 1 4 4 C 1.39715 * 119.99560 * 359.72741 * 3 2 1 5 5 C 1.37600 * 120.00466 * 179.76225 * 4 3 2 6 6 C 1.39745 * 119.99372 * 0.51087 * 5 4 3 7 7 C 1.47691 * 119.99819 * 179.76669 * 6 5 4 8 8 O 1.21583 * 119.99572 * 179.97438 * 7 6 5 9 9 N 1.34768 * 120.00309 * 359.97438 * 7 6 5 10 10 C 1.46507 * 120.00057 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46897 * 34.99981 * 10 9 7 12 12 C 1.53000 * 109.46759 * 275.00168 * 10 9 7 13 13 C 1.53005 * 109.46575 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47038 * 60.00091 * 13 12 10 15 15 C 1.52993 * 109.47013 * 299.99741 * 14 13 12 16 16 H 1.09002 * 109.47181 * 300.00196 * 15 14 13 17 17 N 1.46501 * 109.47299 * 180.02562 * 15 14 13 18 18 C 1.36934 * 120.00216 * 84.99383 * 17 15 14 19 19 H 1.08001 * 120.00045 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00320 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46938 * 60.00687 * 22 20 18 24 24 H 1.48499 * 109.46705 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47231 * 300.00250 * 22 20 18 26 26 C 1.52995 * 109.46898 * 155.00000 * 10 9 7 27 27 C 1.39738 * 119.99593 * 359.74003 * 6 5 4 28 28 C 1.37608 * 119.99156 * 0.02562 * 27 6 5 29 29 H 1.07999 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99512 * 179.97438 * 1 2 3 31 31 H 1.08009 * 120.00161 * 179.72469 * 2 1 3 32 32 H 1.08000 * 119.99256 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.00106 * 180.25470 * 5 4 3 34 34 H 0.97000 * 120.00331 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47555 * 299.99607 * 12 10 9 36 36 H 1.08998 * 109.47508 * 60.00490 * 12 10 9 37 37 H 1.09002 * 109.46589 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47185 * 299.99877 * 13 12 10 39 39 H 1.09002 * 109.47307 * 59.99860 * 14 13 12 40 40 H 1.08996 * 109.46764 * 179.97438 * 14 13 12 41 41 H 0.96997 * 120.00225 * 265.00634 * 17 15 14 42 42 H 0.96998 * 119.99460 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47415 * 299.99825 * 26 10 9 44 44 H 1.08993 * 109.47201 * 60.00525 * 26 10 9 45 45 H 1.07992 * 120.00608 * 180.02562 * 27 6 5 46 46 H 1.08007 * 119.99259 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 1.3666 2.4887 -0.0058 5 6 2.0544 3.6805 -0.0008 6 6 3.4519 3.6805 -0.0008 7 6 4.1902 4.9596 -0.0007 8 8 5.4060 4.9596 -0.0003 9 7 3.5164 6.1267 -0.0012 10 6 4.2489 7.3955 -0.0016 11 1 5.1596 7.2891 -0.5910 12 6 4.6127 7.7748 1.4353 13 6 5.3783 9.0996 1.4347 14 6 4.5015 10.1950 0.8245 15 6 4.1376 9.8156 -0.6123 16 1 5.0483 9.7087 -1.2016 17 7 3.2986 10.8647 -1.1969 18 6 3.8782 11.9635 -1.7729 19 1 4.9540 12.0565 -1.7967 20 6 3.0833 12.9578 -2.3263 21 7 1.7722 12.8447 -2.2969 22 14 3.8741 14.4563 -3.1128 23 1 4.7431 14.0247 -4.2370 24 1 2.8155 15.3632 -3.6248 25 1 4.6922 15.1724 -2.1014 26 6 3.3716 8.4906 -0.6116 27 6 4.1505 2.4703 -0.0004 28 6 3.4623 1.2787 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8669 -0.9354 0.0045 32 1 0.2866 2.4885 -0.0106 33 1 1.5143 4.6157 -0.0011 34 1 2.5463 6.1268 -0.0011 35 1 3.7021 7.8813 2.0247 36 1 5.2377 6.9947 1.8698 37 1 5.6371 9.3700 2.4584 38 1 6.2890 8.9927 0.8454 39 1 3.5908 10.3018 1.4138 40 1 5.0467 11.1388 0.8245 41 1 2.3325 10.7812 -1.1757 42 1 1.2168 13.5397 -2.6832 43 1 3.1124 8.2204 -1.6352 44 1 2.4610 8.5971 -0.0222 45 1 5.2304 2.4702 0.0000 46 1 4.0022 0.3433 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981347464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:47 Heat of formation + Delta-G solvation = -15.342039 kcal Electronic energy + Delta-G solvation = -25040.494048 eV Core-core repulsion = 21507.939188 eV Total energy + Delta-G solvation = -3532.554860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43688 -40.00590 -39.00612 -36.27422 -35.22916 -34.77859 -32.95833 -32.15567 -31.10442 -30.12827 -29.25510 -25.76237 -25.33837 -23.69951 -23.30080 -22.77921 -21.55125 -20.97002 -20.50580 -19.38701 -18.73889 -17.63016 -17.08723 -16.46055 -16.17275 -16.06505 -15.85061 -15.69197 -15.35940 -15.12584 -15.02789 -14.87425 -14.36702 -14.16616 -14.14550 -13.85829 -13.54719 -13.41423 -13.18756 -12.90780 -12.79485 -12.29495 -12.24738 -12.18287 -12.06028 -11.97710 -11.80088 -11.65895 -11.51998 -11.40184 -11.31834 -10.93394 -10.85599 -10.12717 -10.02169 -9.20365 -8.99834 -7.93638 -5.21404 -0.44726 0.40092 1.28741 1.47337 1.49688 1.55638 2.06536 2.07918 2.56936 2.95979 3.39341 3.57687 3.64607 3.77941 3.84978 3.88042 3.95149 4.03280 4.24708 4.29951 4.33525 4.34830 4.41902 4.47996 4.51820 4.56517 4.65981 4.75347 4.75880 4.93985 5.01161 5.03050 5.09862 5.15590 5.20932 5.24600 5.32425 5.34459 5.36704 5.45060 5.49977 5.53059 5.65150 5.66228 5.81588 5.91767 6.29058 6.50596 7.16182 7.35362 8.10891 8.34988 9.29486 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002358 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.008476 B =11873.021743 C =12675.021896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.035 4.035 4 C -0.130 4.130 5 C -0.080 4.080 6 C -0.157 4.157 7 C 0.555 3.445 8 O -0.581 6.581 9 N -0.708 5.708 10 C 0.158 3.842 11 H 0.068 0.932 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.177 3.823 16 H 0.035 0.965 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.969 3.031 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.279 1.279 26 C -0.114 4.114 27 C -0.072 4.072 28 C -0.123 4.123 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -27.012 8.283 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.036 4.036 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.160 4.160 7 C 0.344 3.656 8 O -0.462 6.462 9 N -0.359 5.359 10 C 0.053 3.947 11 H 0.087 0.913 12 C -0.154 4.154 13 C -0.145 4.145 14 C -0.166 4.166 15 C 0.068 3.932 16 H 0.053 0.947 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.090 0.910 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.205 1.205 26 C -0.153 4.153 27 C -0.091 4.091 28 C -0.141 4.141 29 H 0.127 0.873 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.555 -26.859 8.198 28.125 hybrid contribution -0.262 1.255 -0.606 1.418 sum -1.817 -25.604 7.591 26.768 Atomic orbital electron populations 1.24765 0.95405 1.03718 0.95466 1.21954 0.95805 0.95389 1.03080 1.19662 0.93468 0.94353 0.96094 1.21545 1.01429 0.91029 1.00706 1.21462 0.92072 0.99923 0.96393 1.19978 0.94622 0.92680 1.08715 1.18647 0.86940 0.84651 0.75338 1.90746 1.15207 1.88194 1.52050 1.45916 1.10975 1.04834 1.74140 1.20793 0.94960 0.81843 0.97099 0.91349 1.21810 1.00913 0.97077 0.95646 1.21416 0.98043 0.93741 1.01279 1.22094 0.99294 0.97865 0.97383 1.20310 0.93051 0.87162 0.92651 0.94658 1.42554 1.05277 1.20751 1.68895 1.19543 0.91802 0.97396 1.28244 0.91033 1.25504 0.95969 1.01954 1.03332 1.69796 1.03702 1.35913 1.52470 0.85275 0.76927 0.79508 0.78456 1.20635 1.22121 1.20533 1.21883 0.98958 0.93515 1.00970 1.21277 1.00678 0.91450 0.95663 1.21461 0.93657 0.98264 1.00695 0.87299 0.85813 0.84845 0.82769 0.83514 0.75039 0.90632 0.92160 0.90503 0.92389 0.92677 0.93944 0.79396 0.94062 0.92050 0.90423 0.85506 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 14.15 66.65 0.94 -0.18 16 2 C -0.14 -1.43 9.90 23.59 0.23 -1.19 16 3 C -0.04 -0.50 5.87 -20.08 -0.12 -0.62 16 4 C -0.13 -1.78 9.38 22.48 0.21 -1.57 16 5 C -0.08 -1.30 9.52 22.48 0.21 -1.09 16 6 C -0.16 -3.45 5.88 -20.05 -0.12 -3.57 16 7 C 0.56 15.16 7.73 86.74 0.67 15.83 16 8 O -0.58 -20.31 15.99 -3.98 -0.06 -20.38 16 9 N -0.71 -16.84 5.03 -445.54 -2.24 -19.08 16 10 C 0.16 4.42 2.45 44.99 0.11 4.53 16 11 H 0.07 2.23 7.58 -2.39 -0.02 2.22 16 12 C -0.12 -3.02 5.49 30.60 0.17 -2.85 16 13 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 14 C -0.13 -4.39 5.50 30.59 0.17 -4.23 16 15 C 0.18 6.92 2.77 45.01 0.12 7.04 16 16 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 17 N -0.74 -36.62 5.12 -322.86 -1.65 -38.28 16 18 C -0.24 -13.23 9.93 84.03 0.83 -12.39 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.97 -58.84 13.06 21.65 0.28 -58.55 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 C -0.11 -3.57 4.86 30.61 0.15 -3.42 16 27 C -0.07 -1.49 9.58 22.48 0.22 -1.27 16 28 C -0.12 -1.93 9.76 22.48 0.22 -1.71 16 29 H 0.11 0.65 6.02 -2.91 -0.02 0.63 16 30 H 0.12 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.15 1.32 6.15 -2.91 -0.02 1.31 16 33 H 0.15 1.72 6.38 -2.91 -0.02 1.70 16 34 H 0.41 7.40 6.62 -92.71 -0.61 6.79 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.37 19.74 7.80 -92.71 -0.72 19.02 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.13 2.80 7.64 -2.91 -0.02 2.78 16 46 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -70.56 375.99 2.68 -67.88 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.35 Total: 33.32 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.67 Total: -13.33 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.61 Total: -115.91 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.56 2.68 -67.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981347464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.535 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds